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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042522 ID=TCONS_00042522|Name=TCONS_00042522|organism=Clytia hemisphaerica|type=transcript|length=1004bp
AAAGAGAGTTGCTGCAGAACAGAGCAAGCATAAAATATATAGTCTGCATC
TGAGGCAAAGCTTTGCTTTTCATTCAAAAGGCGCTGGTTAAAATATTTAG
ATGGACTTAGCTTAACATCGCGTTCGGTTTTGTAGCCAAATCTACCTTTA
GGAAATAAGTAAGGATGCGCAAGCAATTCACAGTTTTCATCACGTAGGAT
TGAAATAGGTGTTTCACCTTGACCAGGTGCTAAGGTTAGAATTTCATTGT
CAACTTCTACATCTGTGGGAGTGTGAGACATTAAGGTTGTTTCGTTTGCA
CTTGAACGATGAGCATCAAGTGGGTTGGCTGTGGTTTCAAGATCGTCTGA
ATGGGAATCTTCTGTCTGAAGTTCATCACTAACCTCATGGTGTGAAAGAG
CTTCTTCATCATTATTTTCAGCATTTATCTCTGACGCGTTTTGTGTCATG
GTCTCATCATTAGAAATATTAGTAACATCAATTGCTATGTCTCGATAAAG
GGgattattttctttcaaataactTAAAATGCGTTGTATGAAATCAGGTC
TAATGGGTTCAAAAACAACATGTCCTTTGTATTCTAATTTCCTTTTAAGT
TTAACTATAAGTAAACCATTGTCACTAGTTTTTCGAGGTAAAACATTAGC
AATATTTTCAACATCGATTGGTACATTACAAATTGAACCCTTCAATTTGG
GAAATTGACCTTTAGGCATTATTGCAATTTTCTTAAATAAAATCCTGcga
gaaatcaaaattttttctagcctgCGAAGAGAACTAAATTCAGCTGGTAG
TTCATCTAAAGTGAGTTTGTTTTTCACAGATTGACATGGTAAATTGTCTT
TTTTAAGTTTATTGTGGCATGTTTTGCAAATATACAATTGCCCATCAAAT
GAAATTATTTCAGAGAGATATTCTACTTCTGGCATGTTATACTTGTCAGG
TGAATATTTGATGACAGTTTGCTTGTAGAGACATCTGTGACAACAAACAC
ATTT Run BLAST on NCBI protein sequence of TCONS_00042522-protein >TCONS_00042522-protein ID=TCONS_00042522-protein|Name=TCONS_00042522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
KCVCCHRCLYKQTVIKYSPDKYNMPEVEYLSEIISFDGQLYICKTCHNKL
KKDNLPCQSVKNKLTLDELPAEFSSLRRLEKILISRRILFKKIAIMPKGQ
FPKLKGSICNVPIDVENIANVLPRKTSDNGLLIVKLKRKLEYKGHVVFEP
IRPDFIQRILSYLKENNPLYRDIAIDVTNISNDETMTQNASEINAENNDE
EALSHHEVSDELQTEDSHSDDLETTANPLDAHRSSANETTLMSHTPTDVE
VDNEILTLAPGQGETPISILRDENCELLAHPYLFPKGRFGYKTERDVKLS
PSKYFNQRLLNEKQSFASDADYIFYACSVLQQLS Run BLAST on NCBI transcript from alignment at sc0003472:9678..10681 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042522 ID=TCONS_00042522|Name=TCONS_00042522|organism=Clytia hemisphaerica|type=transcript|length=1004bp|location=Sequence derived from alignment at sc0003472:9678..10681 (Clytia hemisphaerica)
AAATGTGTTTGTTGTCACAGATGTCTCTACAAGCAAACTGTCATCAAATA
TTCACCTGACAAGTATAACATGCCAGAAGTAGAATATCTCTCTGAAATAA
TTTCATTTGATGGGCAATTGTATATTTGCAAAACATGCCACAATAAACTT
AAAAAAGACAATTTACCATGTCAATCTGTGAAAAACAAACTCACTTTAGA
TGAACTACCAGCTGAATTTAGTTCTCTTCGcaggctagaaaaaattttga
tttctcgCAGGATTTTATTTAAGAAAATTGCAATAATGCCTAAAGGTCAA
TTTCCCAAATTGAAGGGTTCAATTTGTAATGTACCAATCGATGTTGAAAA
TATTGCTAATGTTTTACCTCGAAAAACTAGTGACAATGGTTTACTTATAG
TTAAACTTAAAAGGAAATTAGAATACAAAGGACATGTTGTTTTTGAACCC
ATTAGACCTGATTTCATACAACGCATTTTAagttatttgaaagaaaataa
tcCCCTTTATCGAGACATAGCAATTGATGTTACTAATATTTCTAATGATG
AGACCATGACACAAAACGCGTCAGAGATAAATGCTGAAAATAATGATGAA
GAAGCTCTTTCACACCATGAGGTTAGTGATGAACTTCAGACAGAAGATTC
CCATTCAGACGATCTTGAAACCACAGCCAACCCACTTGATGCTCATCGTT
CAAGTGCAAACGAAACAACCTTAATGTCTCACACTCCCACAGATGTAGAA
GTTGACAATGAAATTCTAACCTTAGCACCTGGTCAAGGTGAAACACCTAT
TTCAATCCTACGTGATGAAAACTGTGAATTGCTTGCGCATCCTTACTTAT
TTCCTAAAGGTAGATTTGGCTACAAAACCGAACGCGATGTTAAGCTAAGT
CCATCTAAATATTTTAACCAGCGCCTTTTGAATGAAAAGCAAAGCTTTGC
CTCAGATGCAGACTATATATTTTATGCTTGCTCTGTTCTGCAGCAACTCT
CTTT Coding sequence (CDS) from alignment at sc0003472:9678..10681 >TCONS_00042522 ID=TCONS_00042522|Name=TCONS_00042522|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at sc0003472:9678..10681 (Clytia hemisphaerica)
AAATGTGTTTGTTGTCACAGATGTCTCTACAAGCAAACTGTCATCAAATA
TTCACCTGACAAGTATAACATGCCAGAAGTAGAATATCTCTCTGAAATAA
TTTCATTTGATGGGCAATTGTATATTTGCAAAACATGCCACAATAAACTT
AAAAAAGACAATTTACCATGTCAATCTGTGAAAAACAAACTCACTTTAGA
TGAACTACCAGCTGAATTTAGTTCTCTTCGcaggctagaaaaaattttga
tttctcgCAGGATTTTATTTAAGAAAATTGCAATAATGCCTAAAGGTCAA
TTTCCCAAATTGAAGGGTTCAATTTGTAATGTACCAATCGATGTTGAAAA
TATTGCTAATGTTTTACCTCGAAAAACTAGTGACAATGGTTTACTTATAG
TTAAACTTAAAAGGAAATTAGAATACAAAGGACATGTTGTTTTTGAACCC
ATTAGACCTGATTTCATACAACGCATTTTAagttatttgaaagaaaataa
tcCCCTTTATCGAGACATAGCAATTGATGTTACTAATATTTCTAATGATG
AGACCATGACACAAAACGCGTCAGAGATAAATGCTGAAAATAATGATGAA
GAAGCTCTTTCACACCATGAGGTTAGTGATGAACTTCAGACAGAAGATTC
CCATTCAGACGATCTTGAAACCACAGCCAACCCACTTGATGCTCATCGTT
CAAGTGCAAACGAAACAACCTTAATGTCTCACACTCCCACAGATGTAGAA
GTTGACAATGAAATTCTAACCTTAGCACCTGGTCAAGGTGAAACACCTAT
TTCAATCCTACGTGATGAAAACTGTGAATTGCTTGCGCATCCTTACTTAT
TTCCTAAAGGTAGATTTGGCTACAAAACCGAACGCGATGTTAAGCTAAGT
CCATCTAAATATTTTAACCAGCGCCTTTTGAATGAAAAGCAAAGCTTTGC
CTCAGATGCAGACTATATATTTTATGCTTGCTCTGTTCTGCAGCAACTCT
CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042522-exon-sc0003472-1491911889:9678..10681 | TCONS_00042522-exon-sc0003472-1491911889:9678..10681 | Clytia hemisphaerica | exon |
| TCONS_00042522-exon-sc0003472-1510915933:9678..10681 | TCONS_00042522-exon-sc0003472-1510915933:9678..10681 | Clytia hemisphaerica | exon |
| TCONS_00042522-exon-sc0003472-1575043694:9678..10681 | TCONS_00042522-exon-sc0003472-1575043694:9678..10681 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003472 | supercontig | sc0003472:9678..10681 . |
Blast
The following BLAST results are available for this feature:
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