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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042513 ID=TCONS_00042513|Name=TCONS_00042513|organism=Clytia hemisphaerica|type=transcript|length=1433bp
CTGATGAATCATGTCTCTCTTAGACCCATTGTCGTGTGGTTTTGCTAAGG
TAGCAGTCTATGAGTTGCTTAGAGATGCAAAAGAACTTCTTAGCAAAAAA
AGTATCAAATCGAACCAACATCAACATACTGTTTATGTTGAGCACGTGAA
AAGattcaatGAGCtcttcaatttcaatttgacGGTTAAAACGTATCGTA
GGAACTTTATCAATATTAAAGTAAAAATACACCAACTTGGTAAAAATGCT
GAACTGAAACAGTTAGTTTTGGACAAATTTGGAACTGAAGCTTGGCAAAA
TCTAAGCAATGCTAAAAAAGCAAAACATACTGTGTTTGATTGCAAAGATG
GGTGtctaaaagatgaagatttaaGATATGCTCTGGGTCTTTTTCCCATT
GATGAAAAGGATTTTGCTGGGAAAAAGAGAGCTGAAGTAGGAGGCCTTTT
TCGACCAACATCGTCCGAAGTGCAGTCTGAGACAAAATCACTTGTCAGCG
AATTGAATTCCCAGTACAGAACTATGTATGGCACAACTTTTGACAGTCAA
TATAGAAAATGCAAAGGACAAAAAACCAAGGCTGAGGTAAGGGGTTTTCA
AGCAGTTGGTATCAgacaaataaattattttcaattaaaatttcTAACGA
CATTTTTGGATGCATCTAacacaaattgaaaaaagagtgaattgaaattt
tcatagaGGGAATTCTTTTTTTAACCAGGTGGGTAACTTGTTTGAAGCTT
CAGTCATGCTATAAAcaattttcaatataaaaaaacttaTTGCGGATGGT
AAGTCAATCAAAGTAAAatgttcaaaaacaaaaaatacctagaATTAGAT
GATTTATTTTGGTGTAACACATAGCATACTTGTTTtatttattagaaccc
agtttataagaacttaGGGATGATTTTTCGGGGAAAAATACTATCCTAAG
AACATGGCTATCCTAAGAATTGAATAGATCAGAAAAATTTGCTCAAGATT
ATTAGTTTTCCTATAATTGCAGTAATTTTTTTATACTTCTCAACTTTATA
TTTGAGCAGACTTGAGGGCCAAGCAAAATTCAAAAGTAAGTTTTCAAGTT
GACAGTCTTTCATGTTTGATTTGATAGGCTAGAAAGGAAGTCATTAAGGA
AGTGGTGAAGGGTATTGAAAATCAGAACAATGAGACAATCATAAAGCGGT
AATTATACAGTAGGGGGGGGGCTCAAGCAGTTATTCATCATCACTATGCA
TGATTATCCATTCTGTAGTTGGATATTTTATTTGACAGTTCCAAACTAAT
TTGAAATGGACATTATATTGGACAGTAACTAGATTGTGATAATAAATTCC
ATACATAACTGCTTGATTCCCTCCATAGTTTCCTAGTTTTAGTTCCATAc
ttgtcttctttttttaattttttcttagcatTG Run BLAST on NCBI transcript from alignment at sc0003468:4059..5853- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042513 ID=TCONS_00042513|Name=TCONS_00042513|organism=Clytia hemisphaerica|type=transcript|length=1795bp|location=Sequence derived from alignment at sc0003468:4059..5853- (Clytia hemisphaerica)
CTGATGAATCATGTCTCTCTTAGACCCATTGTCGTGTGGTTTTGCTAAGG
TAGCAGTCTATGAGTTGCTTAGAGATGCAAAAGAACTTCTTAGCAAAAAA
AGTATCAAATCGAACCAACATCAACATACTGTTTATGTTGAGCACGTGAA
AAGGTGAGCATCAAAAACATTGTCAAGGAGACTCTTGAAAATTTTTTATT
TTATTATATTGTTAAGAGAAATAGTTAAATTCCATGGCTAAGGTTTCTTT
AAATATTAGTGTTACTCTTACAATTTTGACAAAACTCAACAAATTTTCCA
AGATTAAGTACTGTCAAAATGAATTTCCTTCAAGAATCAATCGAAAATGG
TATAACTAAATGTTTGGTTTGGCAATAAAGGAAAGGAAATAGCTATATTT
AGCTTTGAAAACAAGAAGTAACGATTTTGAAAAGTCAAGTTACAAGGTGT
CAAAAAGAAAAAGAATCAAAATCCCAAAGCATGAAGAATCAATTTATGTT
TTCTTTTTTTTTTAGATTCAATGAGCTCTTCAATTTCAATTTGACGGTTA
AAACGTATCGTAGGAACTTTATCAATATTAAAGTAAAAATACACCAACTT
GGTAAAAATGCTGAACTGAAACAGTTAGTTTTGGACAAATTTGGAACTGA
AGCTTGGCAAAATCTAAGCAATGCTAAAAAAGCAAAACATACTGTGTTTG
ATTGCAAAGATGGGTGTCTAAAAGATGAAGATTTAAGATATGCTCTGGGT
CTTTTTCCCATTGATGAAAAGGATTTTGCTGGGAAAAAGAGAGCTGAAGT
AGGAGGCCTTTTTCGACCAACATCGTCCGAAGTGCAGTCTGAGACAAAAT
CACTTGTCAGCGAATTGAATTCCCAGTACAGAACTATGTATGGCACAACT
TTTGACAGTCAATATAGAAAATGCAAAGGACAAAAAACCAAGGCTGAGGT
AAGGGGTTTTCAAGCAGTTGGTATCAGACAAATAAATTATTTTCAATTAA
AATTTCTAACGACATTTTTGGATGCATCTAACACAAATTGAAAAAAGAGT
GAATTGAAATTTTCATAGAGGGAATTCTTTTTTTAACCAGGTGGGTAACT
TGTTTGAAGCTTCAGTCATGCTATAAACAATTTTCAATATAAAAAAACTT
ATTGCGGATGGTAAGTCAATCAAAGTAAAATGTTCAAAAACAAAAAATAC
CTAGAATTAGATGATTTATTTTGGTGTAACACATAGCATACTTGTTTTAT
TTATTAGAACCCAGTTTATAAGAACTTAGGGATGATTTTTCGGGGAAAAA
TACTATCCTAAGAACATGGCTATCCTAAGAATTGAATAGATCAGAAAAAT
TTGCTCAAGATTATTAGTTTTCCTATAATTGCAGTAATTTTTTTATACTT
CTCAACTTTATATTTGAGCAGACTTGAGGGCCAAGCAAAATTCAAAAGTA
AGTTTTCAAGTTGACAGTCTTTCATGTTTGATTTGATAGGCTAGAAAGGA
AGTCATTAAGGAAGTGGTGAAGGGTATTGAAAATCAGAACAATGAGACAA
TCATAAAGCGGTAATTATACAGTAGGGGGGGGGCTCAAGCAGTTATTCAT
CATCACTATGCATGATTATCCATTCTGTAGTTGGATATTTTATTTGACAG
TTCCAAACTAATTTGAAATGGACATTATATTGGACAGTAACTAGATTGTG
ATAATAAATTCCATACATAACTGCTTGATTCCCTCCATAGTTTCCTAGTT
TTAGTTCCATACTTGTCTTCTTTTTTTAATTTTTTCTTAGCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042513-exon-sc0003468-1575043694:5701..5853 | TCONS_00042513-exon-sc0003468-1575043694:5701..5853 | Clytia hemisphaerica | exon |
| TCONS_00042513-exon-sc0003468-1575043694:4059..5338 | TCONS_00042513-exon-sc0003468-1575043694:4059..5338 | Clytia hemisphaerica | exon |
| TCONS_00042513-exon-sc0003468-1510915933:5701..5853 | TCONS_00042513-exon-sc0003468-1510915933:5701..5853 | Clytia hemisphaerica | exon |
| TCONS_00042513-exon-sc0003468-1510915933:4059..5338 | TCONS_00042513-exon-sc0003468-1510915933:4059..5338 | Clytia hemisphaerica | exon |
| TCONS_00042513-exon-sc0003468-1491911889:5701..5853 | TCONS_00042513-exon-sc0003468-1491911889:5701..5853 | Clytia hemisphaerica | exon |
| TCONS_00042513-exon-sc0003468-1491911889:4059..5338 | TCONS_00042513-exon-sc0003468-1491911889:4059..5338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003468 | supercontig | sc0003468:4059..5853 - |
Blast
The following BLAST results are available for this feature:
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