TCONS_00042438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042438
Unique NameTCONS_00042438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042438 ID=TCONS_00042438|Name=TCONS_00042438|organism=Clytia hemisphaerica|type=transcript|length=551bp
AATGCTTCTAATTTACTTTTCTGTAAAGTCAAAGAGCTAGAAAAAGCATT
ACTCAAATCAGAACAATATAGCAGGCGTGAATGTCTCGACATTACTGGTT
TAGGAGATGACAGTGACGAAGACCTTGAAACAAATGTATGTACTCTTTTT
TCAAACATCGGTGTGGCTCTGGACAAGGACAAGGATGTACAAGCTTGTCA
CAGATATGgcaagaaaaaaactgtcattATTAAGTTTACAAACAGTAAAC
ATGTTCATAAGATTCTATCCTTGAAATCTGAGTTGCCTAAAGAAATATTT
GTCAACGAAACTCTTTGTCCGAGAAACAAACTTATTCGTGGGAGATGTGG
TTTGCTCAAAAAAGAAGGTCAGCTTGCCAACGTAGCAACACGAAATGGAA
TGGTGAGAGTCAAAAAGGTTGGAGGCAATGGTTATATAAACATTGAGCAT
GAACATGACATTCAGGATATGTTTCCTAACTTTAAGTTTCCCTTCTAAAT
CTGATTTTTGACTTTCACGGCAACAcacaaattgtttttgttttttttct
c
Run BLAST on NCBI

protein sequence of TCONS_00042438-protein

>TCONS_00042438-protein ID=TCONS_00042438-protein|Name=TCONS_00042438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
NASNLLFCKVKELEKALLKSEQYSRRECLDITGLGDDSDEDLETNVCTLF
SNIGVALDKDKDVQACHRYGKKKTVIIKFTNSKHVHKILSLKSELPKEIF
VNETLCPRNKLIRGRCGLLKKEGQLANVATRNGMVRVKKVGGNGYINIEH
EHDIQDMFPNFKFPF
Run BLAST on NCBI

transcript from alignment at sc0003421:7503..8053

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042438 ID=TCONS_00042438|Name=TCONS_00042438|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0003421:7503..8053 (Clytia hemisphaerica)
gagaaaaaaaacaaaaacaatttgtgTGTTGCCGTGAAAGTCAAAAATCA
GATTTAGAAGGGAAACTTAAAGTTAGGAAACATATCCTGAATGTCATGTT
CATGCTCAATGTTTATATAACCATTGCCTCCAACCTTTTTGACTCTCACC
ATTCCATTTCGTGTTGCTACGTTGGCAAGCTGACCTTCTTTTTTGAGCAA
ACCACATCTCCCACGAATAAGTTTGTTTCTCGGACAAAGAGTTTCGTTGA
CAAATATTTCTTTAGGCAACTCAGATTTCAAGGATAGAATCTTATGAACA
TGTTTACTGTTTGTAAACTTAATaatgacagtttttttcttgcCATATCT
GTGACAAGCTTGTACATCCTTGTCCTTGTCCAGAGCCACACCGATGTTTG
AAAAAAGAGTACATACATTTGTTTCAAGGTCTTCGTCACTGTCATCTCCT
AAACCAGTAATGTCGAGACATTCACGCCTGCTATATTGTTCTGATTTGAG
TAATGCTTTTTCTAGCTCTTTGACTTTACAGAAAAGTAAATTAGAAGCAT
T

Coding sequence (CDS) from alignment at sc0003421:7503..8053

>TCONS_00042438 ID=TCONS_00042438|Name=TCONS_00042438|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0003421:7503..8053 (Clytia hemisphaerica)
TTAGAAGGGAAACTTAAAGTTAGGAAACATATCCTGAATGTCATGTTCAT
GCTCAATGTTTATATAACCATTGCCTCCAACCTTTTTGACTCTCACCATT
CCATTTCGTGTTGCTACGTTGGCAAGCTGACCTTCTTTTTTGAGCAAACC
ACATCTCCCACGAATAAGTTTGTTTCTCGGACAAAGAGTTTCGTTGACAA
ATATTTCTTTAGGCAACTCAGATTTCAAGGATAGAATCTTATGAACATGT
TTACTGTTTGTAAACTTAATaatgacagtttttttcttgcCATATCTGTG
ACAAGCTTGTACATCCTTGTCCTTGTCCAGAGCCACACCGATGTTTGAAA
AAAGAGTACATACATTTGTTTCAAGGTCTTCGTCACTGTCATCTCCTAAA
CCAGTAATGTCGAGACATTCACGCCTGCTATATTGTTCTGATTTGAGTAA
TGCTTTTTCTAGCTCTTTGACTTTACAGAAAAGTAAATTAGAAGCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026276XLOC_026276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042438-exon-sc0003421-1491911889:7503..8053TCONS_00042438-exon-sc0003421-1491911889:7503..8053Clytia hemisphaericaexon
TCONS_00042438-exon-sc0003421-1510915933:7503..8053TCONS_00042438-exon-sc0003421-1510915933:7503..8053Clytia hemisphaericaexon
TCONS_00042438-exon-sc0003421-1575043694:7503..8053TCONS_00042438-exon-sc0003421-1575043694:7503..8053Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042438-proteinTCONS_00042438-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003421supercontigsc0003421:7503..8053 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.622417	1.21391	0.352366	0.229823	0	0	0.133369	0.374576	0.262249	0.216559	0	0	0.41395	0.501539	0.11781	0	0.155749	0.399093	0	0	0.100298	0.293531	0.356825	0.216271	1.22515	1.39162	0.568971	0	0.115139	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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