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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042428 ID=TCONS_00042428|Name=TCONS_00042428|organism=Clytia hemisphaerica|type=transcript|length=986bp
ATACTAAACGTTCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTA
GATGTTATTGTACCACTTGATCAAACCTGCGATCATAATATTGAAAGACA
GATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTCCCACATCG
ATGCAGCAGTAAAgaaTCTGCAACAATTCAGGACTAGCACAGAAACTAAA
CCTTAACTGTCTTCATGAAAAAGACTGTTTAGATGTCGGTTAGTTTTGGA
CGTACTGTATGGAGGGTGTCTTTTACACTCCGGGACTGAATTTTGATCGC
AGCGCCCTCTTATTGAGGAGAACGTGCTGGCATTTTCGGATTGGGTTCGC
ATTGTAAATGGTGATATATGTACACGTAGGCGGTGGATAAATTAGCAAAT
AGGTTCTTTAATACCAGAATTACGCAAGCCTCACTGTGCCATGGCTGGTT
GTGCATCCTCGCCAATTGTCCCAAAATTAGAGAAGAACGGAGGTAAGCAG
AATCTTGAGCAAACTTTTACCTGTCTCAAAGCCATGTCTGTCGAGGGTAA
AGGGAGgcaacaccccttctcacagcccTACTGGGAATcctccccactgg
aaaaaatggccaaaatttggtccccactgaaaatagaTCAGACAAGCCAA
TCCTAACCGCAAAtcattgtgctattttttccaactgaattttcttgctc
aaaaacaatggaattcaaatcctcaGTCATGAGCaaaatgggaatatcaa
tccacaTTGAATTTTGGTCCGCTTTTTTTACTCCCATTGGCTAAAaaacc
gggtctgtgagaagggtgtgtGAGGCAGGAAAAAAAGATTCAAACAGTAG
GAAAACACTCTTGCTTTCTGATTGGTCGAATTCCCTTTTCATCCTTCCTT
GTCTTGTAGACATTTCGGATACGAACTTCGAGACACAGCAAGCAAGGGGA
GAGTGACAATCGATGGAACAAAATACGATTTTGGTG Run BLAST on NCBI transcript from alignment at sc0003418:7818..9390+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042428 ID=TCONS_00042428|Name=TCONS_00042428|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at sc0003418:7818..9390+ (Clytia hemisphaerica)
ATACTAAACGTTCAAGTACAAACATTATTTTCTCGTCATTGGAAGAGCTA
GATGTTATTGTACCACTTGATCAAACCTGCGATCATAATATTGAAAGACA
GATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTCCCACATCG
ATGCAGCAGTAAAGTAAGTAGAATTTATTGTATATCGGTACTTCATATAC
AATATTCACAGTAACCCTTACAACATAAGTGTTTTAGTATATTCTCGAAA
GTTTAATACTTACAACATAACCTACACTAAGTGCGTAACGTAAAATCATT
ACTTCTTAAAAAGTCGAAGATACAGAGCACATATTGTCAGAATGATATCT
TATCCCATAtcatattttatcacccgataACATCACCGTAAATAACTAGA
TTTGTGATACCAACGGAAgcatatattttgaaaacgcgttggtttttaaa
gaaagttatcttttcttattttttcaggaaTCTGCAACAATTCAGGACTA
GGTATATTATTTTccaatgatataattttcaaactGTCTTAAGGGCCATG
CCCTTTTTGTTAAGTATTTAAGGAGATGTAACTAGTTCAAACTCTACCTC
TAGTCTTTGAAGATTTTAGTTACCCGTTCAAAGCTTGTAAGGTAACGAAA
GGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTTGTTTATTCATTCAAG
CATCGTCATTTNACCTTTTGATTGGCGGGAAGAGTGTTGTTTATTCATTC
AAGCAtcgtcatttttttctataGCACAGAAACTAAACCTTAACTGTCTT
CATGAAAAAGACTGTTTAGATGTCGGTTAGTTTTGGACGTACTGTATGGA
GGGTGTCTTTTACACTCCGGGACTGAATTTTGATCGCAGCGCCCTCTTAT
TGAGGAGAACGTGCTGGCATTTTCGGATTGGGTTCGCATTGTAAATGGTG
ATATATGTACACGTAGGCGGTGGATAAATTAGCAAATAGGTTCTTTAATA
CCAGAATTACGCAAGCCTCACTGTGCCATGGCTGGTTGTGCATCCTCGCC
AATTGTCCCAAAATTAGAGAAGAACGGAGGTAAGCAGAATCTTGAGCAAA
CTTTTACCTGTCTCAAAGCCATGTCTGTCGAGGGTAAAGGGAGgcaacac
cccttctcacagcccTACTGGGAATcctccccactggaaaaaatggccaa
aatttggtccccactgaaaatagaTCAGACAAGCCAATCCTAACCGCAAA
tcattgtgctattttttccaactgaattttcttgctcaaaaacaatggaa
ttcaaatcctcaGTCATGAGCaaaatgggaatatcaatccacaTTGAATT
TTGGTCCGCTTTTTTTACTCCCATTGGCTAAAaaaccgggtctgtgagaa
gggtgtgtGAGGCAGGAAAAAAAGATTCAAACAGTAGGAAAACACTCTTG
CTTTCTGATTGGTCGAATTCCCTTTTCATCCTTCCTTGTCTTGTAGACAT
TTCGGATACGAACTTCGAGACACAGCAAGCAAGGGGAGAGTGACAATCGA
TGGAACAAAATACGATTTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042428-exon-sc0003418-1491911889:7818..7980 | TCONS_00042428-exon-sc0003418-1491911889:7818..7980 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1510915933:7818..7980 | TCONS_00042428-exon-sc0003418-1510915933:7818..7980 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1575043694:7818..7980 | TCONS_00042428-exon-sc0003418-1575043694:7818..7980 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1491911889:8295..8318 | TCONS_00042428-exon-sc0003418-1491911889:8295..8318 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1510915933:8295..8318 | TCONS_00042428-exon-sc0003418-1510915933:8295..8318 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1575043694:8295..8318 | TCONS_00042428-exon-sc0003418-1575043694:8295..8318 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1491911889:8592..9390 | TCONS_00042428-exon-sc0003418-1491911889:8592..9390 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1510915933:8592..9390 | TCONS_00042428-exon-sc0003418-1510915933:8592..9390 | Clytia hemisphaerica | exon |
| TCONS_00042428-exon-sc0003418-1575043694:8592..9390 | TCONS_00042428-exon-sc0003418-1575043694:8592..9390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003418 | supercontig | sc0003418:7818..9390 + |
Blast
The following BLAST results are available for this feature:
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