TCONS_00042425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042425
Unique NameTCONS_00042425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042425 ID=TCONS_00042425|Name=TCONS_00042425|organism=Clytia hemisphaerica|type=transcript|length=1103bp
agtacAGTTGCGAAATGACCTTTACAGACTGTAAGAAAAGTTTACAAAAT
GTCTCTGTTTTCTTCCTTGTCTCTTCAACACGTGAAGAATGAGATGCTGG
AAATCTCCACCCAATGCTCCCTCAGAGGGCTTGTTCAAAGCATGAAATGG
TCTGCAGAACTTGCTGCTGCTTTGCCATCAAGTGATGAAAATCTTGAGAT
CATGTCAAACGAGTTGAATAAAGACAAATTATTCCTGAAGGAGTATGACA
AATACTGCCTTGGCAAAGGATACTTTGACTGTAAAGAGTTTTCTCGTGCT
TCACTTTATTTGAAGGATTGCAAAAGTAAACTGTGTCAGTTTTTATACTT
TTACTCCCGCTATATGgaatatgaaaagaaaaagaaataccaGTTTGTAG
ATGTACTTGATGAAAAAGCAGCAGAAAAGCAGGATTGGCAAGAGCTGATT
GACTTGAGGGATGACCTGAAAAAAAACGAAGATAATTTGGATTCCTATGG
GTTTTATTTATATGGCATCGTGTTGAAGAATCTTGATTTGACCAAGGAAG
CTATCGAGAATCTAGAATGCTCAATTCAAATGGAGCCTTTGTTTTGGGCT
GCTTGGCAAGAATTATCCACGTTGTGCAAAGACAGACAAATGTTGAAAGA
GCTGAAAGTACCGAAACACTGGATGAGTGAATTCTTTTATTCTTCAGTGG
AGTTGGAACTTCACATGGCGGAAGAAGCGCTAACCAGATACCAAGACATC
AGCGCTGCTGGTTTTAACGGTAGTTCATACGTCAATTCACAAATCGCAAT
CTGTCTCTACAATTTAAGAGACTTCGATAATTCAGTGGAATACTTTCGCG
AGCTATACGACGCTGATCCAGAAATGTTGGAACATATTGATGTGTATTCA
AATATCTTATACATCCAGgAGGACAGACCAGAATTGAGTCATTTAGCACA
TCACGTTTGTAAAGTGGACAAATATAGAACTGAATCGTGTGTTGTGATAG
GTAAATTATAGACATTTTTCCAATTCTATCCAGCCCGAGAATCATTATGT
CATTCACTACAAGACCATTGCATTATGTAGACACACCCTAGgtaaaaaac
atc
Run BLAST on NCBI

protein sequence of TCONS_00042425-protein

>TCONS_00042425-protein ID=TCONS_00042425-protein|Name=TCONS_00042425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MSLFSSLSLQHVKNEMLEISTQCSLRGLVQSMKWSAELAAALPSSDENLE
IMSNELNKDKLFLKEYDKYCLGKGYFDCKEFSRASLYLKDCKSKLCQFLY
FYSRYMEYEKKKKYQFVDVLDEKAAEKQDWQELIDLRDDLKKNEDNLDSY
GFYLYGIVLKNLDLTKEAIENLECSIQMEPLFWAAWQELSTLCKDRQMLK
ELKVPKHWMSEFFYSSVELELHMAEEALTRYQDISAAGFNGSSYVNSQIA
ICLYNLRDFDNSVEYFRELYDADPEMLEHIDVYSNILYIQEDRPELSHLA
HHVCKVDKYRTESCVVIGKL
Run BLAST on NCBI

transcript from alignment at sc0003417:3134..10679-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042425 ID=TCONS_00042425|Name=TCONS_00042425|organism=Clytia hemisphaerica|type=transcript|length=7546bp|location=Sequence derived from alignment at sc0003417:3134..10679- (Clytia hemisphaerica)
AGTACAGTTGCGAAATGACCTTTACAGGTAATACAGTATATATGGGTTTT
TTAATTTTTGCTCTCATTCAATGGTCCCTTTTGTGAAGCATTGAAAAGGG
TTAGTCTTTCTGGCCTAGGCCCTTGGAAATTCATTTATTTTGATTTTGAA
GTTCCTTATTGACAAAAACTGATTGTGACTCTGTCTCTGAGAGAGTTTGA
AGAGTAAATCTATAAAATTGGGTCATTTGTCTCATTTGGTCAACTATGTC
CCCCAGAAATGGACAATATACCTCTTCATAAATGCAATATTTCATTCTGA
GGTCAGCACTTTTGAGATAATTACTTCTTGAAGAGTATATTGATTAAATG
TTTATAGAGTTTTAGGGTTTCAATTGCTGGATTTTGAGATCTTTTGGGTT
TGTAATTTTTTTTTTGATGCTGGGAAGTTGAAAAATACATATTGTGCTGA
TTCCCGACTGAAGTGATTTTGTATGAATCAAACAACTTTTTCAATGACAT
ACACTTATATACAGCCCTGTTGAGGGTTCGAAATCTCTGAAGAAAAAGTA
TTTTTTTCTTTTCCAAAAATTATTATTATACAGATTTGCAAGCTAGGCTC
ACAGTGGGCCTCTAATCGATCTTATTTTACACTATTCTGGAATCGTATTT
TGAGGGATGGTTTTCCCATGCATTGTTGAGGTTTTCTTTGAAGGTCTTGA
TAGACTTTGCTGTAATGACATTTCTCGGCAGTCTATTCCAGGTTGGCACA
CATCTGTAATAAAAGGATTTTGTTTGCGTTCCGTGGAAAACGTCATTCGC
GAAGTTAGGTAGAAGCTCATGAGCGTGTCTTCGATTTGGAGGCGGACGTT
TAGTCAACTTGTCAGGTATTGTTGTTTTATCGTAGTAGTGGAGGTGTTTG
TAAACCTGTACCATATCACAAAATTGTCTTCGAAATTCGAGTGTTGGTAT
GCCAAGAATTTTGAGCATATTACGTGTCTTTGCACTCCCTCAAGTAAGTT
GACGTGTTTAGGTAATATTGGTGACCAAACTGATTGTGCGTACTCAAGCT
GTGGTTGGACAATTGTTGAATATANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCAACTATGCCATACCCTTCTAACTTCT
TCCAAAGCCTACGATGAGGTACGGTATCAAATGCTTTAGCGAAATCAAAA
TAGATGACAACTTTTTCGTCTGATATACTTTCACAGCACCTGTCAACATA
TTTCAATAGTTGAGTAACAGTGGAACGTCTACTGATAAAGCCATACTGCT
TATCTGATAAAAGGTTTAAGTTTGTCAGGTGGTTCGTGATATGTTCTCGT
AAGATCGACTCCATCAGCTTGCAAACCACAGATGTTAAACTCACTGGTCT
GTAGTTGATGGCCAATTTATGCATGCCTTTGTTCTTGAAGATGGGCGTGA
CGTGAGCAACCTTCCAATCCTCAGGTACCTCAAGTACCCCTTCAGCCAGT
GTCTTATTCATAATCCCTGAAAAGGACTCGGAAATTTCGTCGACAAGTTC
TTTCAACATTCTTGGATATATTTCATCAGGACCAAAAGATTTGTTTGTAT
CCAAATCCTTGATCTTCTTACTTCGTGGTCTTATAATGGCAATAAAGTTT
TTGGGTCGGCAGGTTTTGAGTAGGGTCATTCAGGTGACTGTAAACCAACA
AATCAAAAACAAAACTAGTTTACCCCTATATTATTTAAAATGTATAATCT
GTGTTGCTTTTGTATTTAGACTGTAAGAAAAGTTTACAAAATGTCTCTGT
TTTCTTCCTTGTCTCTTCAACACGTGAAGAATGAGATGCTGGAAATCTCC
ACCCAATGCTCCCTCAGAGGGCTTGTTCAAAGCATGAAATGGTAAGCTGA
ATTAATTCATCTCAAACTTTCTATGTAGTTTCTGAAATCGCAGTTCTGTG
AAGAGAAATGAAACAGTTTCAGAATTTTAAAGACGAGGTCAAAAGTAAAA
AACACACCAAATTAATTGTATTAGAAGAAAAATAATTTTCCAGATTTCAG
AAAATGTGCAAGAAATTCCATTGACAGGGTGTCTATGGGACCTTGAAAAC
CTTGAAAATCCCCCAAAAAATCCGTAGACACCCTGATCAAAGAATTTTTA
AGATACATCGTATAAATTTGTAGTTATGACTTTTTCCTGCGCATCTGATC
CTTTTTGTTCTTTCTATTATCTATAAATTCTTGCATGTTTTGACTTTTTT
TATCAGGTTAGGTATATCAAATCAATATTTAGGATTATTTAGAGCTTAAT
TTTATTTTGTGTTATTTCCAGGTCTGCAGAACTTGCTGCTGCTTTGCCAT
CAAGTGATGAAAATCTTGAGATCATGTCAAACGAGTTGAATAAAGACAAA
TTATTCCTGAAGGAGTATGACAAATACTGCCTTGGCAAAGGATACTTTGA
CTGTAAAGAGTTTTCTCGTGCTTCACTTTATTTGAAGGATTGCAAAAGTA
AACTGTGTCAGTTTTTATACTTTTACTCCCGCTATATGGTAAGTGTGTGT
TGCTTCTGATTGTATGAGTTTTTGCTTTATTTGGTTTATTTTACAATTTT
GTCTAAAGGACTACCATAAACTAATTTCTCAACGCAAGTTCAAACAAATA
AGAAACAATGGAAAGAAACAAAAGGCTTCCAGACTACGGTTTTTTATACA
AACTATGGGATTACCAAGCATCCATCATCTATTAAATATATACGTTTCAT
GAAACTTTGTATCTGGCTATTCTTATTTAAGCTCATGTCTGTGCAAACTA
ACTTACCCAAACTGTTGTTTTTTCAGGAATATGAAAAGAAAAAGAAATAC
CAGTTTGTAGATGTACTTGGTAAGTCTTATCTCTACGGTGGCCCAAATAT
GCAAACACTTTAAAATATACAAACACAAACGAAAATTACAAACACTACCA
CTTAGTTGATAGTGTTTCCTAAGCTTGTTTTTAGGTCGGCAATGCCGATC
TGAGCTATATTTTAGGTCGGCAAAGTTGTTTAAAGACTGCGGCAATGTTT
GTTTTTTTATTTCCTATAAACAAATTCGTTCCTATAAACAAATTTCACAA
GAAAGAAGTTTCGCGAGCTTGGGAAGTTCCCTCTAAGACAAATAAAGATT
GTTTTTCTCTTTTAATACTTTTTGCTGTTAAGGTCGGCTTTCCTGACCTA
AAAGATAACTTATGGTCGGCTGCCGAGAGAATCAATGAATATGGTCGGCA
ATGAACTGCCGACCATACGCACTCTTTGGTCGGCTTTTAGGTCGGCACTG
CCGAATGCCGACCTGAAATTCGAGGGCTGAGTGTTTGCATTTTAGTTGTT
ATTGTTTGCATTTTAGTTGTTATTGTTTGCATTTTAGTTGATTGTGTTTG
CATTTTAGTTGATAGTGTTTGCATTTTAGTTGATAGTGTTTGCATTTTAG
TTGATAGTGTTTGCATTTTAGTTGTTATTGTTTGCATTTTAGTTGATTGT
GTTTGCATTTTAGTTGATAGTGTTTGCATTTTAGTTGTTATTGTTTGCAT
TTTAGTTGATAGTGTTTGCATTTTAGTTGATTGTGTTTGTAGTTTAGTTT
AAAGTGTTTGTAATTTATGTTTGCATATATGGGCCGACGTACCGCTCTTT
TCTTAACGTGTTCTCATCTCGTTTATCCTGATCAGCATAGTAAAACAAAA
AAGAAATCAAAGGTCCTTATAAAAAAGGGGTGTTATTTTTTTGGGTATTA
ATTTGAGGAGGGAGTATAAAGAAACACTCTTTAATTCTAATTCGAAAGCC
GTGAAAAGTGGAAATCCCACCTAAAATACCCTATTTTGTTTCCTTAGATG
AAAAAGCAGCAGAAAAGCAGGATTGGCAAGAGCTGATTGACTTGAGGGAT
GACCTGAAAAAAAACGAAGATAATTTGGATTCCTATGGGTTTTATTTGTA
AGTGATTTCGTTTGATTGGTCTTTTCATGATGTTTTTTATCTTCATCTGA
TGTAGAAGTTAATTCGTAAAAAATAAACATGGCGACTCTTTACACCATAG
GCTTTCCAGACAGCTCCATTCGCTAAAAAGTAAGATATTAAGAGAATTTT
TGTGTATTTTGTTTTGAAAATCTTATTTTACATACTTTTTCTGTTAGATA
TGGCATCGTGTTGAAGAATCTTGATTTGACCAAGGAAGCTATCGAGAATC
TAGAATGCTCAATTCAAATGGAGCCTTTGTTTTGGGCTGCTTGGCAAGAA
TTATCCACGTTGTGCAAAGACAGACAAATGGTATCAATAACTCGTTCATT
TTCTTTTCATTCATTGTGTTTCATTCTTATGACCAATCCTCGCAAAAGAG
ACAGCTTTACAAAGTTCAAAACATTGCAATGTGTATGATGGTGGTTTTTT
CTGAACAGTTCTCCCAAATTAGGCTCCTCTCACTTGCTTTGAGATGTTTT
TATATGAGGTAGTCACCTCAGCTACTTCTTCTCATCCAGTCTTATCAGAC
ATAGACCAGCGACCGAGGTAGTAAATTGTGTCACTTCGTAGGAAACGAAT
AAATACTAATAAATAGGGTGTAGAATTGACAAAAAAAAATTCGCCCTTCG
AATCTCCTGCAGTATTCAAGTGAATCCATTTTAGTTAATCGATAGAACTT
ATCAAGGGTCCCCCCTTTACTAGCGGTTTTTTCGAAGTCTGAAAATCAAA
TATCTGAGGCTACCAACGGATTCAGCATGAAAAGTAGGTAAAAAAATGGG
GTTGTTTGTTAAGTTTCGACCACCTAGTGTCGAGAAATGGCATTTTAAAG
GCGAAAAATCGACGGGCATTTTCCGATGACCTCAACATTTTCCTATGTGC
ATTTTCAGAAAAAAATAATTCCAACACCTGGATAGCCTTCGGTTTGTAAT
TTCTAAAAATGGTATGGTTTATTCAGTTTTGTTAAGTTTCACTTCCTAGA
TCTTGAGATGATATCCATCTTCAAGGCCTGATCTAAGAGGTGCTCTACCA
AAACCTGTTTTAAAGGTATTTTCTGAATCTCGGACGCTGATCTAACGGGG
CAAAAATTTTGTACCTATTTGATGTATCTAGGCTGCTGGCATCCACTAAC
GGATTCGTGCTCCTTATACTACCTGTGGTTTTGTAGATGTACTTTAATGG
GATAAGCTTTCGCGGAGATTAAATTTCGCGGATTTCGCGAATTTGGTTGT
CATCCGCGAAAATCCGCGAAATTAAGTCCCAATGGAAATTTGGAACGGCC
TCATCCGCGAAATATTTCTAAACAAAACTCAAACTATGTCAGATAAATAC
TATTTCAATGGTTACTTGCATCAAAAGAAGCGCAAATAATGCGTATTTCA
ACAACCAACATGCATGATTTGACAGTAAAAGTCACAAAATCGTAAAAATA
TTGCCACCCAATAGTGCCACCCGCGAATTTAAGTCCCCGCGAAATTTTTG
AATTTCGCGGATAGGCCCAACCGTTAACCGGGAAATTTAATCCCCGCGAA
AATTTATCCCATTAAAGTATGCGATTTAGACTACAAACTATCTTGAGCAT
TTTTTTTTTTCGACAGTTGAAAGAGCTGAAAGTACCGAAACACTGGATGA
GTGAATTCTTTTATTCTTCAGTGGAGTTGGAACTTCACATGGCGGAAGAA
GCGCTAACCAGATACCAAGACATCAGCGCTGCTGGTTTTAACGGTAGTTC
ATACGTCAATTCACAAATCGCAATCTGTCTCTACAATTTAAGAGGTAACT
AAATTGGACCGACAATAGCCTGTTCTTGCAGGACCATTCGAATCATTACC
AACTCCAATCCAGCAAAAGCTCACAATTAGGTCTTTATTCCCTCAAAAGT
TATTAAGATTTTTGTAAATTTTGAGATTTTCGAATCTAAAGTTTTGATAC
AGTCCAAAAAACGCGTCCTTATAATATTCCACTCCTGTTTATCTTTTCAA
CAAGCACAAAACCTAGGCTAGACTACACAAAACTGTTATCCAGGCGCCGC
GGCTCGACATTTTAAGTGGTCGGGCCACATAATATAGTGTCTAAGGAGGC
GCCACCATGGTTGGCGCCGACGGGCTAGAAAATTTTGCGAATTTCACTCC
TCTAGATTGGCTAAAACAGCCTCTTTTCTTGAAGAAGATATCTTCACAAA
TCCATAAAGTTTGTTCCAAAAGAGAAATTTAGTCAGCAAATTTATTAATG
TTAGACTGTGTTTTGTAGAGCCTTAAATGATAATGTATACTGTAGAATAT
ATTCATACAATGATGATTAGTCAAGATGGATGAAATATCTGATATAAAAA
GAAGTTTACAAATCGTTCTCTGTAAATTTGCCGAAAATATTTAGTCGCTC
AGGTTGAACTCATTGGCAATATCAATCAGGGATAGTGAGTCTCTAATGTT
TCTTTATGTTCGTCATAGTTCAATTTTTTTTCTAACTGACTTTTCAAAAC
CGGCCCTACCGCTGCCGCGGCGCCTGTTATCTAATTCGAATTCTATCAAA
AGTTATAGCCGTTTTGGGAGTTTTATTAAAATCAGAAAAAAGTGAAAAAC
TATACGAGTGCTTGAAGGTAGTTAGTGACTTCAGTGGAGAGATTCTAATA
AAGTTCTTACCAAGAAACAATAAAGTTTCCATAAAAATTTTTTTGTAAGA
ACGTAAGAACAAGATGAAGTTTCAACTTTTCCTTTACCTCTCATTAGACT
TCGATAATTCAGTGGAATACTTTCGCGAGCTATACGACGCTGATCCAGAA
ATGTTGGAACATATTGATGTGTATTCAAATATCTTATACATCCAGGTGTG
TGTTGATTGAAATTTGATTTTTCTTTTGTTTTCCTCATTTGTTTTGAAGA
TTTCTGGAAAAATGTTATTTGATAACGGGCGGACACCAAAAACAAGAAAG
ACTCAAAAATTACAAAATGTATCGAAAAATTAGGGGACACCCGGGTTTGA
ACCAGGGACCTCTCGATCTGCAGTCGAATGCTCTACCACTGAGCTATATC
CCCATGGTGTGAAGTTATAACTCAGAGATAAAAAATATTAAACACTAGTA
TCATACTAAAGCCTGTTCAATTCACACACTGGCAATCTTACACGTTTATT
TACTTTTTCAGGAGGACAGACCAGAATTGAGTCATTTAGCACATCACGTT
TGTAAAGTGGACAAATATAGAACTGAATCGTGTGTTGTGATAGGTAAATT
ATAGACATTTTTCCAATTCTATCCAGCCCGAGAATCATTATGTCATTCAC
TACAAGACCATTGCATTATGTAGACACACCCTAGGTAAAAAACATC

Coding sequence (CDS) from alignment at sc0003417:3134..10679-

>TCONS_00042425 ID=TCONS_00042425|Name=TCONS_00042425|organism=Clytia hemisphaerica|type=CDS|length=7704bp|location=Sequence derived from alignment at sc0003417:3134..10679- (Clytia hemisphaerica)
GAGGACAGACCAGAATTGAGTCATTTAGCACATCACGTTTGTAAAGTGGA
CAAATATAGAACTGAATCGTGTGTTGTGATAGGTAAATTATAGACTTCGA
TAATTCAGTGGAATACTTTCGCGAGCTATACGACGCTGATCCAGAAATGT
TGGAACATATTGATGTGTATTCAAATATCTTATACATCCAGTTGAAAGAG
CTGAAAGTACCGAAACACTGGATGAGTGAATTCTTTTATTCTTCAGTGGA
GTTGGAACTTCACATGGCGGAAGAAGCGCTAACCAGATACCAAGACATCA
GCGCTGCTGGTTTTAACGGTAGTTCATACGTCAATTCACAAATCGCAATC
TGTCTCTACAATTTAAGAGATATGGCATCGTGTTGAAGAATCTTGATTTG
ACCAAGGAAGCTATCGAGAATCTAGAATGCTCAATTCAAATGGAGCCTTT
GTTTTGGGCTGCTTGGCAAGAATTATCCACGTTGTGCAAAGACAGACAAA
TGATGAAAAAGCAGCAGAAAAGCAGGATTGGCAAGAGCTGATTGACTTGA
GGGATGACCTGAAAAAAAACGAAGATAATTTGGATTCCTATGGGTTTTAT
TTGAATATGAAAAGAAAAAGAAATACCAGTTTGTAGATGTACTTGGTCTG
CAGAACTTGCTGCTGCTTTGCCATCAAGTGATGAAAATCTTGAGATCATG
TCAAACGAGTTGAATAAAGACAAATTATTCCTGAAGGAGTATGACAAATA
CTGCCTTGGCAAAGGATACTTTGACTGTAAAGAGTTTTCTCGTGCTTCAC
TTTATTTGAAGGATTGCAAAAGTAAACTGTGTCAGTTTTTATACTTTTAC
TCCCGCTATATGATGTCTCTGTTTTCTTCCTTGTCTCTTCAACACGTGAA
GAATGAGATGCTGGAAATCTCCACCCAATGCTCCCTCAGAGGGCTTGTTC
AAAGCATGAAATGGAGGACAGACCAGAATTGAGTCATTTAGCACATCACG
TTTGTAAAGTGGACAAATATAGAACTGAATCGTGTGTTGTGATAGGTAAA
TTATAGACTTCGATAATTCAGTGGAATACTTTCGCGAGCTATACGACGCT
GATCCAGAAATGTTGGAACATATTGATGTGTATTCAAATATCTTATACAT
CCAGTTGAAAGAGCTGAAAGTACCGAAACACTGGATGAGTGAATTCTTTT
ATTCTTCAGTGGAGTTGGAACTTCACATGGCGGAAGAAGCGCTAACCAGA
TACCAAGACATCAGCGCTGCTGGTTTTAACGGTAGTTCATACGTCAATTC
ACAAATCGCAATCTGTCTCTACAATTTAAGAGATATGGCATCGTGTTGAA
GAATCTTGATTTGACCAAGGAAGCTATCGAGAATCTAGAATGCTCAATTC
AAATGGAGCCTTTGTTTTGGGCTGCTTGGCAAGAATTATCCACGTTGTGC
AAAGACAGACAAATGATGAAAAAGCAGCAGAAAAGCAGGATTGGCAAGAG
CTGATTGACTTGAGGGATGACCTGAAAAAAAACGAAGATAATTTGGATTC
CTATGGGTTTTATTTGAATATGAAAAGAAAAAGAAATACCAGTTTGTAGA
TGTACTTGGTCTGCAGAACTTGCTGCTGCTTTGCCATCAAGTGATGAAAA
TCTTGAGATCATGTCAAACGAGTTGAATAAAGACAAATTATTCCTGAAGG
AGTATGACAAATACTGCCTTGGCAAAGGATACTTTGACTGTAAAGAGTTT
TCTCGTGCTTCACTTTATTTGAAGGATTGCAAAAGTAAACTGTGTCAGTT
TTTATACTTTTACTCCCGCTATATGATGTCTCTGTTTTCTTCCTTGTCTC
TTCAACACGTGAAGAATGAGATGCTGGAAATCTCCACCCAATGCTCCCTC
AGAGGGCTTGTTCAAAGCATGAAATGGAGGACAGACCAGAATTGAGTCAT
TTAGCACATCACGTTTGTAAAGTGGACAAATATAGAACTGAATCGTGTGT
TGTGATAGGTAAATTATAGACTTCGATAATTCAGTGGAATACTTTCGCGA
GCTATACGACGCTGATCCAGAAATGTTGGAACATATTGATGTGTATTCAA
ATATCTTATACATCCAGTTGAAAGAGCTGAAAGTACCGAAACACTGGATG
AGTGAATTCTTTTATTCTTCAGTGGAGTTGGAACTTCACATGGCGGAAGA
AGCGCTAACCAGATACCAAGACATCAGCGCTGCTGGTTTTAACGGTAGTT
CATACGTCAATTCACAAATCGCAATCTGTCTCTACAATTTAAGAGATATG
GCATCGTGTTGAAGAATCTTGATTTGACCAAGGAAGCTATCGAGAATCTA
GAATGCTCAATTCAAATGGAGCCTTTGTTTTGGGCTGCTTGGCAAGAATT
ATCCACGTTGTGCAAAGACAGACAAATGATGAAAAAGCAGCAGAAAAGCA
GGATTGGCAAGAGCTGATTGACTTGAGGGATGACCTGAAAAAAAACGAAG
ATAATTTGGATTCCTATGGGTTTTATTTGAATATGAAAAGAAAAAGAAAT
ACCAGTTTGTAGATGTACTTGGTCTGCAGAACTTGCTGCTGCTTTGCCAT
CAAGTGATGAAAATCTTGAGATCATGTCAAACGAGTTGAATAAAGACAAA
TTATTCCTGAAGGAGTATGACAAATACTGCCTTGGCAAAGGATACTTTGA
CTGTAAAGAGTTTTCTCGTGCTTCACTTTATTTGAAGGATTGCAAAAGTA
AACTGTGTCAGTTTTTATACTTTTACTCCCGCTATATGATGTCTCTGTTT
TCTTCCTTGTCTCTTCAACACGTGAAGAATGAGATGCTGGAAATCTCCAC
CCAATGCTCCCTCAGAGGGCTTGTTCAAAGCATGAAATGGAGGACAGACC
AGAATTGAGTCATTTAGCACATCACGTTTGTAAAGTGGACAAATATAGAA
CTGAATCGTGTGTTGTGATAGGTAAATTATAGACTTCGATAATTCAGTGG
AATACTTTCGCGAGCTATACGACGCTGATCCAGAAATGTTGGAACATATT
GATGTGTATTCAAATATCTTATACATCCAGTTGAAAGAGCTGAAAGTACC
GAAACACTGGATGAGTGAATTCTTTTATTCTTCAGTGGAGTTGGAACTTC
ACATGGCGGAAGAAGCGCTAACCAGATACCAAGACATCAGCGCTGCTGGT
TTTAACGGTAGTTCATACGTCAATTCACAAATCGCAATCTGTCTCTACAA
TTTAAGAGATATGGCATCGTGTTGAAGAATCTTGATTTGACCAAGGAAGC
TATCGAGAATCTAGAATGCTCAATTCAAATGGAGCCTTTGTTTTGGGCTG
CTTGGCAAGAATTATCCACGTTGTGCAAAGACAGACAAATGATGAAAAAG
CAGCAGAAAAGCAGGATTGGCAAGAGCTGATTGACTTGAGGGATGACCTG
AAAAAAAACGAAGATAATTTGGATTCCTATGGGTTTTATTTGAATATGAA
AAGAAAAAGAAATACCAGTTTGTAGATGTACTTGGTCTGCAGAACTTGCT
GCTGCTTTGCCATCAAGTGATGAAAATCTTGAGATCATGTCAAACGAGTT
GAATAAAGACAAATTATTCCTGAAGGAGTATGACAAATACTGCCTTGGCA
AAGGATACTTTGACTGTAAAGAGTTTTCTCGTGCTTCACTTTATTTGAAG
GATTGCAAAAGTAAACTGTGTCAGTTTTTATACTTTTACTCCCGCTATAT
GATGTCTCTGTTTTCTTCCTTGTCTCTTCAACACGTGAAGAATGAGATGC
TGGAAATCTCCACCCAATGCTCCCTCAGAGGGCTTGTTCAAAGCATGAAA
TGGAGGACAGACCAGAATTGAGTCATTTAGCACATCACGTTTGTAAAGTG
GACAAATATAGAACTGAATCGTGTGTTGTGATAGGTAAATTATAGACTTC
GATAATTCAGTGGAATACTTTCGCGAGCTATACGACGCTGATCCAGAAAT
GTTGGAACATATTGATGTGTATTCAAATATCTTATACATCCAGTTGAAAG
AGCTGAAAGTACCGAAACACTGGATGAGTGAATTCTTTTATTCTTCAGTG
GAGTTGGAACTTCACATGGCGGAAGAAGCGCTAACCAGATACCAAGACAT
CAGCGCTGCTGGTTTTAACGGTAGTTCATACGTCAATTCACAAATCGCAA
TCTGTCTCTACAATTTAAGAGATATGGCATCGTGTTGAAGAATCTTGATT
TGACCAAGGAAGCTATCGAGAATCTAGAATGCTCAATTCAAATGGAGCCT
TTGTTTTGGGCTGCTTGGCAAGAATTATCCACGTTGTGCAAAGACAGACA
AATGATGAAAAAGCAGCAGAAAAGCAGGATTGGCAAGAGCTGATTGACTT
GAGGGATGACCTGAAAAAAAACGAAGATAATTTGGATTCCTATGGGTTTT
ATTTGAATATGAAAAGAAAAAGAAATACCAGTTTGTAGATGTACTTGGTC
TGCAGAACTTGCTGCTGCTTTGCCATCAAGTGATGAAAATCTTGAGATCA
TGTCAAACGAGTTGAATAAAGACAAATTATTCCTGAAGGAGTATGACAAA
TACTGCCTTGGCAAAGGATACTTTGACTGTAAAGAGTTTTCTCGTGCTTC
ACTTTATTTGAAGGATTGCAAAAGTAAACTGTGTCAGTTTTTATACTTTT
ACTCCCGCTATATGATGTCTCTGTTTTCTTCCTTGTCTCTTCAACACGTG
AAGAATGAGATGCTGGAAATCTCCACCCAATGCTCCCTCAGAGGGCTTGT
TCAAAGCATGAAATGGAGGACAGACCAGAATTGAGTCATTTAGCACATCA
CGTTTGTAAAGTGGACAAATATAGAACTGAATCGTGTGTTGTGATAGGTA
AATTATAGACTTCGATAATTCAGTGGAATACTTTCGCGAGCTATACGACG
CTGATCCAGAAATGTTGGAACATATTGATGTGTATTCAAATATCTTATAC
ATCCAGTTGAAAGAGCTGAAAGTACCGAAACACTGGATGAGTGAATTCTT
TTATTCTTCAGTGGAGTTGGAACTTCACATGGCGGAAGAAGCGCTAACCA
GATACCAAGACATCAGCGCTGCTGGTTTTAACGGTAGTTCATACGTCAAT
TCACAAATCGCAATCTGTCTCTACAATTTAAGAGATATGGCATCGTGTTG
AAGAATCTTGATTTGACCAAGGAAGCTATCGAGAATCTAGAATGCTCAAT
TCAAATGGAGCCTTTGTTTTGGGCTGCTTGGCAAGAATTATCCACGTTGT
GCAAAGACAGACAAATGATGAAAAAGCAGCAGAAAAGCAGGATTGGCAAG
AGCTGATTGACTTGAGGGATGACCTGAAAAAAAACGAAGATAATTTGGAT
TCCTATGGGTTTTATTTGAATATGAAAAGAAAAAGAAATACCAGTTTGTA
GATGTACTTGGTCTGCAGAACTTGCTGCTGCTTTGCCATCAAGTGATGAA
AATCTTGAGATCATGTCAAACGAGTTGAATAAAGACAAATTATTCCTGAA
GGAGTATGACAAATACTGCCTTGGCAAAGGATACTTTGACTGTAAAGAGT
TTTCTCGTGCTTCACTTTATTTGAAGGATTGCAAAAGTAAACTGTGTCAG
TTTTTATACTTTTACTCCCGCTATATGATGTCTCTGTTTTCTTCCTTGTC
TCTTCAACACGTGAAGAATGAGATGCTGGAAATCTCCACCCAATGCTCCC
TCAGAGGGCTTGTTCAAAGCATGAAATGGAGGACAGACCAGAATTGAGTC
ATTTAGCACATCACGTTTGTAAAGTGGACAAATATAGAACTGAATCGTGT
GTTGTGATAGGTAAATTATAGACTTCGATAATTCAGTGGAATACTTTCGC
GAGCTATACGACGCTGATCCAGAAATGTTGGAACATATTGATGTGTATTC
AAATATCTTATACATCCAGTTGAAAGAGCTGAAAGTACCGAAACACTGGA
TGAGTGAATTCTTTTATTCTTCAGTGGAGTTGGAACTTCACATGGCGGAA
GAAGCGCTAACCAGATACCAAGACATCAGCGCTGCTGGTTTTAACGGTAG
TTCATACGTCAATTCACAAATCGCAATCTGTCTCTACAATTTAAGAGATA
TGGCATCGTGTTGAAGAATCTTGATTTGACCAAGGAAGCTATCGAGAATC
TAGAATGCTCAATTCAAATGGAGCCTTTGTTTTGGGCTGCTTGGCAAGAA
TTATCCACGTTGTGCAAAGACAGACAAATGATGAAAAAGCAGCAGAAAAG
CAGGATTGGCAAGAGCTGATTGACTTGAGGGATGACCTGAAAAAAAACGA
AGATAATTTGGATTCCTATGGGTTTTATTTGAATATGAAAAGAAAAAGAA
ATACCAGTTTGTAGATGTACTTGGTCTGCAGAACTTGCTGCTGCTTTGCC
ATCAAGTGATGAAAATCTTGAGATCATGTCAAACGAGTTGAATAAAGACA
AATTATTCCTGAAGGAGTATGACAAATACTGCCTTGGCAAAGGATACTTT
GACTGTAAAGAGTTTTCTCGTGCTTCACTTTATTTGAAGGATTGCAAAAG
TAAACTGTGTCAGTTTTTATACTTTTACTCCCGCTATATGATGTCTCTGT
TTTCTTCCTTGTCTCTTCAACACGTGAAGAATGAGATGCTGGAAATCTCC
ACCCAATGCTCCCTCAGAGGGCTTGTTCAAAGCATGAAATGGAGGACAGA
CCAGAATTGAGTCATTTAGCACATCACGTTTGTAAAGTGGACAAATATAG
AACTGAATCGTGTGTTGTGATAGGTAAATTATAGACTTCGATAATTCAGT
GGAATACTTTCGCGAGCTATACGACGCTGATCCAGAAATGTTGGAACATA
TTGATGTGTATTCAAATATCTTATACATCCAGTTGAAAGAGCTGAAAGTA
CCGAAACACTGGATGAGTGAATTCTTTTATTCTTCAGTGGAGTTGGAACT
TCACATGGCGGAAGAAGCGCTAACCAGATACCAAGACATCAGCGCTGCTG
GTTTTAACGGTAGTTCATACGTCAATTCACAAATCGCAATCTGTCTCTAC
AATTTAAGAGATATGGCATCGTGTTGAAGAATCTTGATTTGACCAAGGAA
GCTATCGAGAATCTAGAATGCTCAATTCAAATGGAGCCTTTGTTTTGGGC
TGCTTGGCAAGAATTATCCACGTTGTGCAAAGACAGACAAATGATGAAAA
AGCAGCAGAAAAGCAGGATTGGCAAGAGCTGATTGACTTGAGGGATGACC
TGAAAAAAAACGAAGATAATTTGGATTCCTATGGGTTTTATTTGAATATG
AAAAGAAAAAGAAATACCAGTTTGTAGATGTACTTGGTCTGCAGAACTTG
CTGCTGCTTTGCCATCAAGTGATGAAAATCTTGAGATCATGTCAAACGAG
TTGAATAAAGACAAATTATTCCTGAAGGAGTATGACAAATACTGCCTTGG
CAAAGGATACTTTGACTGTAAAGAGTTTTCTCGTGCTTCACTTTATTTGA
AGGATTGCAAAAGTAAACTGTGTCAGTTTTTATACTTTTACTCCCGCTAT
ATGATGTCTCTGTTTTCTTCCTTGTCTCTTCAACACGTGAAGAATGAGAT
GCTGGAAATCTCCACCCAATGCTCCCTCAGAGGGCTTGTTCAAAGCATGA
AATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026266XLOC_026266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042425-exon-sc0003417-1575043694:10653..10679TCONS_00042425-exon-sc0003417-1575043694:10653..10679Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:8539..8660TCONS_00042425-exon-sc0003417-1575043694:8539..8660Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:7892..8108TCONS_00042425-exon-sc0003417-1575043694:7892..8108Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:7561..7603TCONS_00042425-exon-sc0003417-1575043694:7561..7603Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:6483..6582TCONS_00042425-exon-sc0003417-1575043694:6483..6582Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:6150..6282TCONS_00042425-exon-sc0003417-1575043694:6150..6282Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:4686..4863TCONS_00042425-exon-sc0003417-1575043694:4686..4863Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:3635..3732TCONS_00042425-exon-sc0003417-1575043694:3635..3732Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1575043694:3134..3318TCONS_00042425-exon-sc0003417-1575043694:3134..3318Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:10653..10679TCONS_00042425-exon-sc0003417-1510915933:10653..10679Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:8539..8660TCONS_00042425-exon-sc0003417-1510915933:8539..8660Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:7892..8108TCONS_00042425-exon-sc0003417-1510915933:7892..8108Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:7561..7603TCONS_00042425-exon-sc0003417-1510915933:7561..7603Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:6483..6582TCONS_00042425-exon-sc0003417-1510915933:6483..6582Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:6150..6282TCONS_00042425-exon-sc0003417-1510915933:6150..6282Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:4686..4863TCONS_00042425-exon-sc0003417-1510915933:4686..4863Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:3635..3732TCONS_00042425-exon-sc0003417-1510915933:3635..3732Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1510915933:3134..3318TCONS_00042425-exon-sc0003417-1510915933:3134..3318Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:10653..10679TCONS_00042425-exon-sc0003417-1491911889:10653..10679Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:8539..8660TCONS_00042425-exon-sc0003417-1491911889:8539..8660Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:7892..8108TCONS_00042425-exon-sc0003417-1491911889:7892..8108Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:7561..7603TCONS_00042425-exon-sc0003417-1491911889:7561..7603Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:6483..6582TCONS_00042425-exon-sc0003417-1491911889:6483..6582Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:6150..6282TCONS_00042425-exon-sc0003417-1491911889:6150..6282Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:4686..4863TCONS_00042425-exon-sc0003417-1491911889:4686..4863Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:3635..3732TCONS_00042425-exon-sc0003417-1491911889:3635..3732Clytia hemisphaericaexon
TCONS_00042425-exon-sc0003417-1491911889:3134..3318TCONS_00042425-exon-sc0003417-1491911889:3134..3318Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042425-proteinTCONS_00042425-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003417supercontigsc0003417:3134..10679 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.8676	45.5522	17.2979	10.8543	10.3694	6.66919	15.5922	16.9866	15.9461	16.8997	21.0558	17.8846	15.6438	20.299	27.4544	24.3504	24.0517	30.2831	16.008	14.6751	23.3471	23.2232	55.8134	50.8575	8.97805	11.867	19.266	14.9362	28.0487	34.6537
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR007192APC8
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
Vocabulary: Biological Process
TermDefinition
GO:0030071regulation of mitotic metaphase/anaphase transition
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030071 regulation of mitotic metaphase/anaphase transition
cellular_component GO:0005680 anaphase-promoting complex
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00042425 vs. Swiss-Prot (Human)
Match: CDC23 (Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 6.653e-78
Identity = 137/316 (43.35%), Postives = 192/316 (60.76%), Query Frame = 1 
Query:   73 LQHVKNEMLEISTQCSLRGLVQSMKWSAELAAALPSSDENLEIMSNELNKDKLFLKE----YDKYCLGKGYFDCKEFSRASLYLKDCKSKLCQFLYFYSRYMEYEKKKKYQFVDVLDEKAAEKQDWQELIDLRDDLKKNED--NLDSYGFYLYGIVLKNLDLTKEAIENLECSIQMEPLFWAAWQELSTLCKDRQMLKELKVPKHWMSEFFYSSVELELHMAEEALTRYQDISAAGFNGSSYVNSQIAICLYNLRDFDNSVEYFRELYDADPEMLEHIDVYSNILYIQEDRPELSHLAHHVCKVDKYRTESCVVIG 1002
            L+ +K ++L I+     RGL+ S KWSAELA +LP+      +   EL       +E     D Y L K YFD KE+ RA+ +L  C SK   FLY YSRY+  EKKK  + VD L      +   + L +LR +L K      LD +G YLYG+VL+ LDL KEAI+    +  + PL W AW EL  L  D++MLK L +P  WM EFF + +  EL + EEAL +YQ++   GF+ SSY+ SQIA+  +N+RD D ++  F EL   DP  +E++D +SN+LY++  + ELS+LAH++C++DKYR E+C VIG
Sbjct:   29 LREIKKQLLLIAGLTRERGLLHSSKWSAELAFSLPA------LPLAELQPPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIG 338
The following BLAST results are available for this feature:
BLAST of TCONS_00042425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC236.653e-7843.35Cell division cycle protein 23 homolog OS=Homo sap... [more]
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