TCONS_00042425-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042425-protein
Unique NameTCONS_00042425-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042425-protein ID=TCONS_00042425-protein|Name=TCONS_00042425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MSLFSSLSLQHVKNEMLEISTQCSLRGLVQSMKWSAELAAALPSSDENLE
IMSNELNKDKLFLKEYDKYCLGKGYFDCKEFSRASLYLKDCKSKLCQFLY
FYSRYMEYEKKKKYQFVDVLDEKAAEKQDWQELIDLRDDLKKNEDNLDSY
GFYLYGIVLKNLDLTKEAIENLECSIQMEPLFWAAWQELSTLCKDRQMLK
ELKVPKHWMSEFFYSSVELELHMAEEALTRYQDISAAGFNGSSYVNSQIA
ICLYNLRDFDNSVEYFRELYDADPEMLEHIDVYSNILYIQEDRPELSHLA
HHVCKVDKYRTESCVVIGKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026266XLOC_026266Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042425TCONS_00042425Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR007192APC8
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
Vocabulary: Biological Process
TermDefinition
GO:0030071regulation of mitotic metaphase/anaphase transition
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030071 regulation of mitotic metaphase/anaphase transition
cellular_component GO:0005680 anaphase-promoting complex
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 61..204
e-value: 1.3E-5
score: 24.6
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 214..314
e-value: 7.5E-5
score: 22.3
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 140..318
IPR007192Cdc23PFAMPF04049ANAPC8coord: 12..125
e-value: 4.6E-18
score: 65.5

Blast
[Close]
BLAST of TCONS_00042425-protein vs. Swiss-Prot (Human)
Match: CDC23 (Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 8.216e-80
Identity = 140/325 (43.08%), Postives = 197/325 (60.62%), Query Frame = 0 
Query:    1 MSLFSSLS-LQHVKNEMLEISTQCSLRGLVQSMKWSAELAAALPSSDENLEIMSNELNKDKLFLKE----YDKYCLGKGYFDCKEFSRASLYLKDCKSKLCQFLYFYSRYMEYEKKKKYQFVDVLDEKAAEKQDWQELIDLRDDLKKNED--NLDSYGFYLYGIVLKNLDLTKEAIENLECSIQMEPLFWAAWQELSTLCKDRQMLKELKVPKHWMSEFFYSSVELELHMAEEALTRYQDISAAGFNGSSYVNSQIAICLYNLRDFDNSVEYFRELYDADPEMLEHIDVYSNILYIQEDRPELSHLAHHVCKVDKYRTESCVVIG 318
            +S+ S  S L+ +K ++L I+     RGL+ S KWSAELA +LP+      +   EL       +E     D Y L K YFD KE+ RA+ +L  C SK   FLY YSRY+  EKKK  + VD L      +   + L +LR +L K      LD +G YLYG+VL+ LDL KEAI+    +  + PL W AW EL  L  D++MLK L +P  WM EFF + +  EL + EEAL +YQ++   GF+ SSY+ SQIA+  +N+RD D ++  F EL   DP  +E++D +SN+LY++  + ELS+LAH++C++DKYR E+C VIG
Sbjct:   20 LSINSDFSDLREIKKQLLLIAGLTRERGLLHSSKWSAELAFSLPA------LPLAELQPPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIG 338
The following BLAST results are available for this feature:
BLAST of TCONS_00042425-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC238.216e-8043.08Cell division cycle protein 23 homolog OS=Homo sap... [more]
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