|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042418 ID=TCONS_00042418|Name=TCONS_00042418|organism=Clytia hemisphaerica|type=transcript|length=769bp
GGAAGATTTACATTTATGAAGGTAcattttttagaaacatttgATTGTAT
AATACGattcttatttttattgaagatGGACTTGAACGCAACATCTTCCG
ATGGTAAAGAGCTTGTGGTTTCCAATACTCAAAATGTCACAGGGAACACA
AAGTTCAAACAAAAGGTTCTCGAAGAAGAAGAATATCTTTCAGTACTGGA
CAAGATTGTTGAGCGTGATTTCTATCCAGAGTTATCAAGAATGAAGTTGG
AGAGTGAATACCTCAATGCATTGGAAAGTGACAACGTGGAAGAGTTGAGA
AAAATTCAATTATTATTGGACAGATCAAATATGGGGGAGCTTCCTAATGA
AGAAATCATTTCTGTGGATCCAGAAGCAGAAGACGAGTCCACCAACAACA
AAGAATCGATTCagattgataaaaaactttcacTTGATAAATTCTTGGCT
AAAAACACATCTGAAGATAATGCTTCCTTCGAGAAAATCATGGAAGCGAC
ACGAGCAAAACACAAAGAGAAACATGCATGGTTATTTCAGCAACAAATGG
AATTGCACGACCGGTTAGATGCTTCTAAAGCCTTACCAAGCAGCGTAGAA
GCACAGTTATTGGCCATCGAGACAAAACCTAATAATTTAGACACATGGAA
ATACGAGGCTAGGAATGCGCTTATGTATACTCCAGATGGTGTCGAGTTGA
CCGCTGAAGAAATCTTGAATCAGAAAGggaaaaaagagaaacaaattTGT
CATGAAAATACAAGGTTAG Run BLAST on NCBI protein sequence of TCONS_00042418-protein >TCONS_00042418-protein ID=TCONS_00042418-protein|Name=TCONS_00042418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
GRFTFMKVHFLETFDCIIRFLFLLKMDLNATSSDGKELVVSNTQNVTGNT
KFKQKVLEEEEYLSVLDKIVERDFYPELSRMKLESEYLNALESDNVEELR
KIQLLLDRSNMGELPNEEIISVDPEAEDESTNNKESIQIDKKLSLDKFLA
KNTSEDNASFEKIMEATRAKHKEKHAWLFQQQMELHDRLDASKALPSSVE
AQLLAIETKPNNLDTWKYEARNALMYTPDGVELTAEEILNQKGKKEKQIC
HENTRL Run BLAST on NCBI transcript from alignment at sc0003411:9985..11701+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042418 ID=TCONS_00042418|Name=TCONS_00042418|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at sc0003411:9985..11701+ (Clytia hemisphaerica)
GGAAGATTTACATTTATGAAGGTAcattttttagaaacatttgATTGTAT
AATACGattcttatttttattgaagatGGACTTGAACGCAACATCTTCCG
ATGGTAAAGAGCTTGTGGTTTCCAATACTCAAAATGTCACAGGGAACACA
AAGTTCAAACAAAAGGTTCTCGAAGAAGAAGAATATCTTTCAGTAAGTAa
aatttttagtcaaaatttgCGTAGAATTATAATCCgcagctttaaaaaaa
aaatattattgtaaTATCTTTTTCGTTATACGTCTAAAATTGTTTCTTTT
AATAAAGCATTGCCAATAAATTTTAGCTTTTGAAGTACATGATGATATAG
AGCAAGGTGATATATTtgtatgaaaaatatttattcaatctaTGAGAAAT
TGAAGCCCAGGAAGCCCTTGCTTGTGGTCAGGGAAGATAACATCATTAAA
CTTACAATTTGAATATTTGGGACAGATTGTATCTTATGTGACTACTTCAC
TCTTATAAAACTAGTTTTTACTGGCTAAGAGTTTCACTCCTATTAAAGTT
CTCTTATGTTTATTTTGTTCATAGGCCTCGTCAATTTCAAATTGTAAGCT
TGTCTATATTGACTCCCAATTGACTCAGATATGGAgtaattcaaaattta
aaatggaGAAGAAGACGATTTTTCTTTACCCCCAATCGAACAATAAGAGG
TACATGACCTGATACTAAAGCATGTGCCTGTACGTGCCTGAATAATTTTG
TAagaataaaaccttaaaatgttaaTCACATCTTATAGGTACTGGACAAG
ATTGTTGAGCGTGATTTCTATCCAGAGTTATCAAGAATGAAGTTGGAGAG
TGAATACCTCAATGCATTGGAAAGTGACAACGTGGAAGAGTTGAGAAAAA
TTCAATTATTATTGGACAGATCAAATATGGGGGAGCTTCCTAGTAAGTAT
ATAAATTTTAGCATTTAtctgttgaacggtgaaaaagattAGCTATTGTA
TTTTGAgttttcccaaaatattttgtccTTAGTGAAAAGAAAAAGCATTT
GAAAAACCTATACATTTTTTTGCACTCTTTTAGTTTCGTTAGATATTCAT
GTCTTAAAAAGAACAGCAAATTTTCAAGAGTACTTGACTTCtaagattgt
ttattttcaaacatgtgaggactttaaaaatacaataagGTATTTCTGAT
TCACATTATATTTAGAGTACAAGAGACCTTCCCGTCTGCGCATGATGAAT
GAATTTCATTCTCAAATTTGGCTAATCTTCTTTTCTGGTTTTAGATGAAG
AAATCATTTCTGTGGATCCAGAAGCAGAAGACGAGTCCACCAACAACAAA
GAATCGATTCagattgataaaaaactttcacTTGATAAATTCTTGGCTAA
AAACACATCTGAAGATAATGCTTCCTTCGAGAAAATCATGGAAGCGACAC
GAGCAAAACACAAAGAGAAACATGCATGGTTATTTCAGCAACAAATGGAA
TTGCACGACCGGTTAGATGCTTCTAAAGCCTTACCAAGCAGCGTAGAAGC
ACAGTTATTGGCCATCGAGACAAAACCTAATAATTTAGACACATGGAAAT
ACGAGGCTAGGAATGCGCTTATGTATACTCCAGATGGTGTCGAGTTGACC
GCTGAAGAAATCTTGAATCAGAAAGggaaaaaagagaaacaaattTGTCA
TGAAAATACAAGGTTAG Coding sequence (CDS) from alignment at sc0003411:9985..11701+ >TCONS_00042418 ID=TCONS_00042418|Name=TCONS_00042418|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0003411:9985..11701+ (Clytia hemisphaerica)
GGAAGATTTACATTTATGAAGGTAcattttttagaaacatttgATTGTAT
AATACGattcttatttttattgaagatGGACTTGAACGCAACATCTTCCG
ATGGTAAAGAGCTTGTGGTTTCCAATACTCAAAATGTCACAGGGAACACA
AAGTTCAAACAAAAGGTTCTCGAAGAAGAAGAATATCTTTCAGTACTGGA
CAAGATTGTTGAGCGTGATTTCTATCCAGAGTTATCAAGAATGAAGTTGG
AGAGTGAATACCTCAATGCATTGGAAAGTGACAACGTGGAAGAGTTGAGA
AAAATTCAATTATTATTGGACAGATCAAATATGGGGGAGCTTCCTAATGA
AGAAATCATTTCTGTGGATCCAGAAGCAGAAGACGAGTCCACCAACAACA
AAGAATCGATTCagattgataaaaaactttcacTTGATAAATTCTTGGCT
AAAAACACATCTGAAGATAATGCTTCCTTCGAGAAAATCATGGAAGCGAC
ACGAGCAAAACACAAAGAGAAACATGCATGGTTATTTCAGCAACAAATGG
AATTGCACGACCGGTTAGATGCTTCTAAAGCCTTACCAAGCAGCGTAGAA
GCACAGTTATTGGCCATCGAGACAAAACCTAATAATTTAGACACATGGAA
ATACGAGGCTAGGAATGCGCTTATGTATACTCCAGATGGTGTCGAGTTGA
CCGCTGAAGAAATCTTGAATCAGAAAGggaaaaaagagaaacaaattTGT
CATGAAAATACAAGGTTAGGAAGATTTACATTTATGAAGGTAcatttttt
agaaacatttgATTGTATAATACGattcttatttttattgaagatGGACT
TGAACGCAACATCTTCCGATGGTAAAGAGCTTGTGGTTTCCAATACTCAA
AATGTCACAGGGAACACAAAGTTCAAACAAAAGGTTCTCGAAGAAGAAGA
ATATCTTTCAGTACTGGACAAGATTGTTGAGCGTGATTTCTATCCAGAGT
TATCAAGAATGAAGTTGGAGAGTGAATACCTCAATGCATTGGAAAGTGAC
AACGTGGAAGAGTTGAGAAAAATTCAATTATTATTGGACAGATCAAATAT
GGGGGAGCTTCCTAATGAAGAAATCATTTCTGTGGATCCAGAAGCAGAAG
ACGAGTCCACCAACAACAAAGAATCGATTCagattgataaaaaactttca
cTTGATAAATTCTTGGCTAAAAACACATCTGAAGATAATGCTTCCTTCGA
GAAAATCATGGAAGCGACACGAGCAAAACACAAAGAGAAACATGCATGGT
TATTTCAGCAACAAATGGAATTGCACGACCGGTTAGATGCTTCTAAAGCC
TTACCAAGCAGCGTAGAAGCACAGTTATTGGCCATCGAGACAAAACCTAA
TAATTTAGACACATGGAAATACGAGGCTAGGAATGCGCTTATGTATACTC
CAGATGGTGTCGAGTTGACCGCTGAAGAAATCTTGAATCAGAAAGggaaa
aaagagaaacaaattTGTCATGAAAATACAAGGTTAGGAAGATTTACATT
TATGAAGGTAcattttttagaaacatttgATTGTATAATACGattcttat
ttttattgaagatGGACTTGAACGCAACATCTTCCGATGGTAAAGAGCTT
GTGGTTTCCAATACTCAAAATGTCACAGGGAACACAAAGTTCAAACAAAA
GGTTCTCGAAGAAGAAGAATATCTTTCAGTACTGGACAAGATTGTTGAGC
GTGATTTCTATCCAGAGTTATCAAGAATGAAGTTGGAGAGTGAATACCTC
AATGCATTGGAAAGTGACAACGTGGAAGAGTTGAGAAAAATTCAATTATT
ATTGGACAGATCAAATATGGGGGAGCTTCCTAATGAAGAAATCATTTCTG
TGGATCCAGAAGCAGAAGACGAGTCCACCAACAACAAAGAATCGATTCag
attgataaaaaactttcacTTGATAAATTCTTGGCTAAAAACACATCTGA
AGATAATGCTTCCTTCGAGAAAATCATGGAAGCGACACGAGCAAAACACA
AAGAGAAACATGCATGGTTATTTCAGCAACAAATGGAATTGCACGACCGG
TTAGATGCTTCTAAAGCCTTACCAAGCAGCGTAGAAGCACAGTTATTGGC
CATCGAGACAAAACCTAATAATTTAGACACATGGAAATACGAGGCTAGGA
ATGCGCTTATGTATACTCCAGATGGTGTCGAGTTGACCGCTGAAGAAATC
TTGAATCAGAAAGggaaaaaagagaaacaaattTGTCATGAAAATACAAG
GTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042418-exon-sc0003411-1491911889:9985..10176 | TCONS_00042418-exon-sc0003411-1491911889:9985..10176 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1510915933:9985..10176 | TCONS_00042418-exon-sc0003411-1510915933:9985..10176 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1575043694:9985..10176 | TCONS_00042418-exon-sc0003411-1575043694:9985..10176 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1491911889:10773..10926 | TCONS_00042418-exon-sc0003411-1491911889:10773..10926 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1510915933:10773..10926 | TCONS_00042418-exon-sc0003411-1510915933:10773..10926 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1575043694:10773..10926 | TCONS_00042418-exon-sc0003411-1575043694:10773..10926 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1491911889:11279..11701 | TCONS_00042418-exon-sc0003411-1491911889:11279..11701 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1510915933:11279..11701 | TCONS_00042418-exon-sc0003411-1510915933:11279..11701 | Clytia hemisphaerica | exon |
| TCONS_00042418-exon-sc0003411-1575043694:11279..11701 | TCONS_00042418-exon-sc0003411-1575043694:11279..11701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003411 | supercontig | sc0003411:9985..11701 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019148 | Nuclear_protein_DGCR14 |
Blast
BLAST of TCONS_00042418 vs. Swiss-Prot (Human)
Match: DGC14 (Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 6.465e-34 Identity = 80/232 (34.48%), Postives = 130/232 (56.03%), Query Frame = 1
Query: 142 GNTKFKQKVLEEEEYLSVLDKIVERDFYPELSRMKLESEYLNALESDNVEELRKIQLLLDRSNMGEL---PNEEIISV----DPE--AEDESTNNKESIQIDKKL--------------SLDKFLAKNTSEDNASFEKIMEATRAKHKEKHAWLFQQQMELHDRLDASKALPSSVEAQLLAIETKPNNLDTWKYEARNALMYTPDGVELTAEEILNQKGKKEKQICHENTRL 768
G KQ+VL+EEEY+ L +++RDF+P++ +++ + EYL A E+ ++E +R+I + S +G++ P ++ PE A NK + SLD FL++ TSEDNASF++IME + + + +HAWL+Q + E R + LPS A+ AIE+ +++TWKY+A+N+LMY P+GV E++ KK +Q+ H+NTR
Sbjct: 29 GAATSKQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFG-SALGKMSREPPPPYVTPATFETPEVHAGTGVVGNKPRPRGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKERSRARHAWLYQAEEEFEKRQKDNLELPS---AEHQAIESSQASVETWKYKAKNSLMYYPEGVP-DEEQLF----KKPRQVVHKNTRF 251
The following BLAST results are available for this feature:
|
