TCONS_00042418-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042418-protein
Unique NameTCONS_00042418-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042418-protein ID=TCONS_00042418-protein|Name=TCONS_00042418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
GRFTFMKVHFLETFDCIIRFLFLLKMDLNATSSDGKELVVSNTQNVTGNT
KFKQKVLEEEEYLSVLDKIVERDFYPELSRMKLESEYLNALESDNVEELR
KIQLLLDRSNMGELPNEEIISVDPEAEDESTNNKESIQIDKKLSLDKFLA
KNTSEDNASFEKIMEATRAKHKEKHAWLFQQQMELHDRLDASKALPSSVE
AQLLAIETKPNNLDTWKYEARNALMYTPDGVELTAEEILNQKGKKEKQIC
HENTRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026259XLOC_026259Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042418TCONS_00042418Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019148Nuclear_protein_DGCR14
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 88..108
IPR019148Nuclear protein DGCR14PFAMPF09751Es2coord: 53..109
e-value: 5.9E-16
score: 59.1
coord: 125..256
e-value: 1.1E-27
score: 97.8

Blast
[Close]
BLAST of TCONS_00042418-protein vs. Swiss-Prot (Human)
Match: DGC14 (Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.168e-34
Identity = 80/232 (34.48%), Postives = 130/232 (56.03%), Query Frame = 0 
Query:   48 GNTKFKQKVLEEEEYLSVLDKIVERDFYPELSRMKLESEYLNALESDNVEELRKIQLLLDRSNMGEL---PNEEIISV----DPE--AEDESTNNKESIQIDKKL--------------SLDKFLAKNTSEDNASFEKIMEATRAKHKEKHAWLFQQQMELHDRLDASKALPSSVEAQLLAIETKPNNLDTWKYEARNALMYTPDGVELTAEEILNQKGKKEKQICHENTRL 256
            G    KQ+VL+EEEY+  L  +++RDF+P++ +++ + EYL A E+ ++E +R+I +    S +G++   P    ++      PE  A      NK   +                   SLD FL++ TSEDNASF++IME  + + + +HAWL+Q + E   R   +  LPS   A+  AIE+   +++TWKY+A+N+LMY P+GV    E++     KK +Q+ H+NTR 
Sbjct:   29 GAATSKQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFG-SALGKMSREPPPPYVTPATFETPEVHAGTGVVGNKPRPRGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKERSRARHAWLYQAEEEFEKRQKDNLELPS---AEHQAIESSQASVETWKYKAKNSLMYYPEGVP-DEEQLF----KKPRQVVHKNTRF 251
The following BLAST results are available for this feature:
BLAST of TCONS_00042418-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DGC142.168e-3434.48Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1[more]
back to top