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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042409 ID=TCONS_00042409|Name=TCONS_00042409|organism=Clytia hemisphaerica|type=transcript|length=850bp
GCGATGTTTTCGAAAACACTTGCTACCATACATGTCCGAATGAATGCGTC
CGAAAGTCGTACACCGTCCGAAAATCAACATACCGAATCGGAAGTCAATC
TGTATatgaagaaatgaagaaaacaatACCAAAGTTCAATAACAGAAGTA
TCAACGagattgaaaaatatatcagTGATAATATCTTGAAAATCCATGTT
TCGTTTTTCGACAACACGGTTGAGACAGAGGAAATGCAACCAGCCGTCTC
TTGGAATTCTCTCATAGcGACCATGGGTGGAGCAATCGGGCTTGGTCTCG
GATTCAGTTTCATCACCGGATTCGAATTtctattcttcttttttgacgtc
attAAATTGGCATGGCAACGACGTAAACAAAAACAAGTTCTTGGTATGTA
AATTGACAAAGTATGCACAAAACGCAACACATGTGTTTATTTGGGATTTG
CAAGTCAATATATGAAGGTTGTATCGAGTATATAAAACACAAAAAAGCTA
AGAATTGGCAATCGACAGGGACTGGAACTTGAAAGTGTTACCATCTTAAA
CTTTGATGTTTATAGTTTAGGTTTAAAAGtgcacaaaagaaaaaaaaatt
tccatcaaGAAAAGGGGATTTTTCATccatcattgaaatttttctatttt
gcagTTAGATCATTTTTGGTTTAACCTGACGATGGTTTCATACGGATAAG
ACCTTCGTAAAAATTATATCTTCGTGAtgtatttcaatgaattataATTA
AAAGTACCCGCGTGAAAACTTTATATTTAATCATatcgtaaaataaaaag
tagaaATAAAATATTCATTATATTAAAATGGAaattcggaaatttttttt Run BLAST on NCBI transcript from alignment at sc0003402:3883..7239+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042409 ID=TCONS_00042409|Name=TCONS_00042409|organism=Clytia hemisphaerica|type=transcript|length=3357bp|location=Sequence derived from alignment at sc0003402:3883..7239+ (Clytia hemisphaerica)
GCGATGTTTTCGAAAACACTTGCTACCATACATGTCCGAATGAATGCGTC
CGAAAGTCGTACACCGTCCGAAAATCAACATACCGAATCGGAAGTCAATC
TGTATatgaagaaatgaagaaaacaatACCAAAGTTCAATAACAGAAGTA
TCAACGagattgaaaaatatatcaggTCAGGTAGATAATAATCAtgtcgg
cgatccaaaaaatatcagcaatctgattggttaaaaagagtataATATAT
CtcgtattttacatgtacaaaatataaattgacgagaAGATGTTGTTGCA
TGTAGAGATATAGTAGCAATCTAACGCCattttgctacaaaagtgccctg
cgcttttttataacacaaaaagtgcatttttgggtcaccgataaaccagc
catcagacatttgctcggacaatatggaaatattttacttgttccggatt
ttccgtatatttatTTCCTTGGAGACAGGATAAGGTGAATGGTGGAGAAT
GTTATGTACTTGAGCAAAAACCCTAATCTATTATTCTAGTCAGATTTAAT
CTTTCCTGACTAAATTAGCTGCTACATCCTGTAGCGTGTGATACTACTCC
TGTAGCATGTGACAGTACTCTATGGTAAAGAGATggcaattcttttttta
ttctttttctaGTGATAATATCTTGAAAATCCATGTTGCGTTTTTCGATA
GCACGATTGAGACAGAGGAAATGCAACCAGCCGTCTCTTGGAATTCTCTC
ATAGGTAAatttataccttatcggccaaaacttagtcggccttaattttt
agctggccctaattttagtcaccaagccaaaatttagtcacttggggccg
actaagttttggccgataatgTAATCAATTTTCTTCGCTACGAATATTTG
TGTAGCTTACCTTTCAACAAATCAAATGATTATTTCAAAGAGACCTCTGT
GTTACAGACCCAGTGGGACCGCAACATCACTGAAAATTTTAGCCAGAATT
TCGTTACCATCCCCATTGAGGAAAATACCTCACAGTTTCAGACCCACTGG
GAAGTTGACTTTGTTTTTACGCCCATTTGAGATTCAATGAAAAAACTGCA
CTAAAAATCATCCCCAGTAGACTTTTTGACCTGGAATCAATAGGATTTCT
TTCCTTATTGAGATATAacaatacacccccttctcacaggccCACTAAGA
AcctcttcccactggaaaaatttgccaaaatgtGTTCGTTCTCACCTTTT
ATTACGTCACACCCTGGTAAGGAAATATTTTAGTACCCTTAGACTTCTTT
CGGGTAATATTATGGTGCGAATAGTGGTTTACTTAATTGTATATTGGTCA
TTCGCATTTAGgaacacctccttctcacagacccggcaGGATTTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTGTTATGTACTTGAACAAAAACCCTAATCTATTATTCTAGTCAGA
TTTAATCTTTCCTGACTAAATTAGCTGCTACATCCTGTAGCGTGTGATAC
TACTCCTGTAGCATGTGACAGTACTCTCTGGTAAAGAGTtgttaattctt
ttttattctttttctaGTGATAATATCTTGAAAATCCATGTTTCGTTTTT
CGACAACACGGTTGAGACAGAGGAAATGCAACCAGCCGTCTCTTGGAATT
CTCTCATAGGTAAatttataccttatcggccaaaacttagtcggccttaa
ttttagttggcccaaatttttagctggccctaattttagtcaccaagcca
aaatttagtcacttttgGCCGATAATGTAATCAATTTTCTTCGCTACGAA
TATTGTGTAGTTTACCTTTCAACAAATCAAATGATTATTTCAAAGAGACC
TCTGTGTTACAGACCCAGTGGGACCCCAACATCACTGAAAATTCtagcca
aaatttcgtccccatcCCCATTGAGGAAAATACCCCACAGTTTCAGACCC
ACTGGGAAGTTGACTTTGTTTTTACGCCCATTTGAGATTCAATGAAAAAA
CTGCACTGAAAATCATCCCCAGTAGACTTTTTGACCTGGAATCAATAGGA
TTTCTTTCTCTATTGAGATATAacaatacacccccttctcacaggccCAC
TAAGAAcctcttcccactggaaaaattgcccAAAATGTGTTCGTTCTCAC
CTTTTATTGCGTCACACCCTGGTAAGGAAATATTTTAGTACCCTTAGACT
TCTTTCGGGTAATATTATGGTGCGAATAGTGGTTTACTTAATTGTATATT
GGTCATTCGCATTTAGgaacacctccttctcacagacccggcaGGATTTT
TTCAGCCCAAACTCGATTGGGATTGATATTAGCCAGAagattcagtgggg
atagataaaatagcacaatattttgcagtgaggattcgctttctaattat
tttcagcagggacaaaaattggggttcaattttccactggggacaatatt
ttggccaatttttccagtgggtctgtgagaagtgggtgtggttttgagtt
ttgtttaagagggttttaggtttaaaactagTAAAGCTATTGAAATGAAT
ATAAAACAttcatgaaaattatttaaacgattttaaaatgtcaaaagGAA
GACATGTTTAGTTACTATAATGGGTCATTTCTATAATGTTCCTttatgga
attttttcaaaatctttctttcagcGACCATGGGTGGAGCAATCGGGCTT
GGTCTCGGATTCAGTTTCATCACCGGATTCGAATTtctattcttcttttt
tgacgtcattAAATTGGCATGGCAACGACGTAAACAAAAACAAGTTCTTG
GTATGTAAATTGACAAAGTATGCACAAAACGCAACACATGTGTTTATTTG
GGATTTGCAAGTCAATATATGAAGGTTGTATCGAGTATATAAAACACAAA
AAAGCTAAGAATTGGCAATCGACAGGGACTGGAACTTGAAAGTGTTACCA
TCTTAAACTTTGATGTTTATAGTTTAGGTTTAAAAGtgcacaaaagaaaa
aaaaatttccatcaaGAAAAGGGGATTTTTCATccatcattgaaattttt
ctattttgcagTTAGATCATTTTTGGTTTAACCTGACGATGGTTTCATAC
GGATAAGACCTTCGTAAAAATTATATCTTCGTGAtgtatttcaatgaatt
ataATTAAAAGTACCCGCGTGAAAACTTTATATTTAATCATatcgtaaaa
taaaaagtagaaATAAAATATTCATTATATTAAAATGGAaattcggaaat
ttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042409-exon-sc0003402-1491911889:3883..4057 | TCONS_00042409-exon-sc0003402-1491911889:3883..4057 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1510915933:3883..4057 | TCONS_00042409-exon-sc0003402-1510915933:3883..4057 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1575043694:3883..4057 | TCONS_00042409-exon-sc0003402-1575043694:3883..4057 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1491911889:5550..5641 | TCONS_00042409-exon-sc0003402-1491911889:5550..5641 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1510915933:5550..5641 | TCONS_00042409-exon-sc0003402-1510915933:5550..5641 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1575043694:5550..5641 | TCONS_00042409-exon-sc0003402-1575043694:5550..5641 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1491911889:6657..7239 | TCONS_00042409-exon-sc0003402-1491911889:6657..7239 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1510915933:6657..7239 | TCONS_00042409-exon-sc0003402-1510915933:6657..7239 | Clytia hemisphaerica | exon |
| TCONS_00042409-exon-sc0003402-1575043694:6657..7239 | TCONS_00042409-exon-sc0003402-1575043694:6657..7239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003402 | supercontig | sc0003402:3883..7239 + |
Blast
The following BLAST results are available for this feature:
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