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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042406 ID=TCONS_00042406|Name=TCONS_00042406|organism=Clytia hemisphaerica|type=transcript|length=510bp
aaaCATCATAGTTATATCAAGCAGGAACCAATGTCTCAGTAATTCATAAG
AGCATTGCGCTTTGCGAAGAAGACAGATAAAGTTGAAGTGTGCACAACAA
AAAGTGCAATAATGGAAAAGCTGATCTTCATTGGTGTCATTCTTTGTATG
TGTTGCCCATGCGCAGATGCATACAAATCACCGTACATTTGATTTGGGGG
GACCTTTATCATGGTAAATTTATTGGCTCTACTATATATTGTAATCCAAA
GCCATACGTCCCCGGTGGTGGTATACAAACGATCCAACAAATTAAGGCTC
CCAAAGCTACACTTGAAGAAAACGAAGTCCTCAGTGGTTTTTCAGCAGGT
ACCCAAGGAACAGGATTTATTGCAGGACTTACAGGTTTCATTGGAGAAGG
GTCgtccaaaataaaaaacattcaaaaactttttaatacTGCTTCAAAGA
TGGCATCGACCATGTGGTTTGTCAGTGGAATCTTGTCTTATCTTGGAGGT
GAACCGAGTG Run BLAST on NCBI transcript from alignment at sc0003401:4896..12115+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042406 ID=TCONS_00042406|Name=TCONS_00042406|organism=Clytia hemisphaerica|type=transcript|length=7220bp|location=Sequence derived from alignment at sc0003401:4896..12115+ (Clytia hemisphaerica)
aaaCATCATAGTTATATCAAGCAGGAACCAATGTCTCAGTAATTCATAAG
AGCATTGCGCTTTGCGAAGAAGACAGATAAAGTTGAAGTGTGCACAACAA
AAAGGTAAGTCTACTTGTATCCTGCTCACAACAGACAAACATTCTAAGAC
CCTTTTCAAAACCCCCGCAGCTGTGGTAACTATTTTGATCCGCCCAATCG
TTCCCCGCAAACAGTGCAACCATTTTAGGCATAGTGGGCTTGAAAAATTA
GATTTCGGTACATAGATTTATATTCCAGTTTTTATTTAAGAGTTCAGTGG
GGGCGCTATAGAGGTTCTTCACATTTtgctaagttacgtaatttccgcca
ttatggaagaaaacattcgattttgtAGAGGCGATCCCTTACGCAATTCG
AACGTTTTACACCATAATGGCGGAAACTAAGTAACTTAATGAAATGTGAA
AAACCTCTTGTGCGAGATTGTTGGCTAAGATTACAAAATAATCAGATTGT
AGAGTTGATAATTTTTGCAGACTCAATACATTTAAGTGTATTTAAAAAGG
GGTAAGCGGATTATTAAGCCCGGCAAATTATTTCTTACATTCATAACCAC
TTACACCATTGGAAAGCCCTCAAAAAAACGATTTacccaaaaaattgaat
ttttttaattgataccttctctttttttgttaataactcccgagaaaaat
tttttaaccctTCGTGCACCTGGGGCTAACGTCATTgctacctgatgacg
tcatccatTTTTGACACCTCCAAAGATAGGACCCCCCTCTAACACttcta
tattttttgttcaaattttgtaCGGAAACTCCATTTGACATTTATACAAG
GGGCACAGGGTAGTCCAGGGGAATTTAGGGTTGACCCAAAATTTGCGTAC
ACatggaattttttgattgaaatgtgttcattaGGTCCCTAGGAGTGAAA
AACCGTTGCGTGCTACTTTGCACACTTGGGCATTTTCCATAACggcggaa
atttcaaaatggcgaattttgaaattttttgaattgttgatgTCTTCGAA
CATAGGCATAATATATACcgtttgaaagaatttttcacgctgaacaactt
ttttgcctacaaaaaagtctgaaaatgtactcaatgtgGGTAAAAAGCGA
TAGAAAGTGTCAAAATAACGTTatcattttcccaaaatttgacatttgtt
CCAAACTATTGagtgttatataccgttgaaaaggatttttcatgtttaac
ttttttactttttcaaaaaagtttgaaaaaattactCAATGTGAGTGAAA
AGTAATAGAAGGTGTCAAAATAACGTTCATTTCTCCAAAGtttggctaaa
atattaagtGTTATACACACCgttgaaaaggattttttatGCTGAACAAC
AAGATGTACTTAGTGCAAGTAAAAAGCGATAAAAGGTGTCAAAAATTACG
TCTAAAATGCTGAAATTTAATAAATCTGATAAATATTCCAAATGCATGTT
TTGAAAGAAACAAGACGAcctgaagtcgaaaatttcgcctagaatttgaa
ctgcatgggaaaaacaagaagtagagattgaagctaatctgaaatctact
ttaaaTAGAGcattgatgaaacaattttacaagaacaacgaggcttaaaa
tcgcttaaaaaaataaaaccaatttaagaacaattgttgttaaattttta
agaactcttataaagtgtatgcttataagaaaagtaaatatgctcatatt
gtacgccaacccttgtttactttgtaagaactaataaccaaaaggtatat
caccgtctatcaagagttattgatttgattcttataaagtacatgcttat
gagaaaaataaatatgctcatattttgcaccgtcctttgtttactttgta
agaacttattaccgaaaggcatatcactgtctatcgagagttattgattc
gattcttataaagtaaatgcttataagaaaaatgaatatgctcatcgTGT
GTGCCGTCCCTTgcttactttgtaagaactaattccGAAAGGTATtggtt
tgtttcttataaagtaaatgcttataagaaaaatagatatgctcatattg
tgcgccatcccttgtttactttgtaagaactaattataCCGAAAGGTAtt
tcaccgtctatcaagagtaaatgatttgattcttataaagtatatgctta
taagaaaaatcaatatgctcatattgtgcgccatcccttgtttactttga
aagaactaGTTACCGAAAGGTggatcaccgtctatcaagagttattgatt
tgattcttataaagtatatgcttataagaaaaataaatatgctcatattg
tgcgccatcccttgtttactttgtaagaactaattataccgaaaggtata
tcaccgtctatcaagagtaaatgatttgattcttataaagtatatgctta
taagaaaaatcaatatgctcatattgtgcgccatcccttgtttactttga
aataactagttaccgaaaggtatatcaccgtccatcaagagttattgatt
tgattcttataaagaaacgcCCATTTAAAAAACGCCCACACGCCTATATT
ATTGCGCCCCAATAATGTCTCGCCAGCCAGACACATACACGGAAGgcgat
cgtaatactttcgctaagcgaaattaataagtTCTCATTAACTAAATGCC
CTGACTTTAGGCCGAAGAGATTCTAATGGTTTAAACGCTGCAGACAACCT
CTTTTTTGTTCGCTTGACCCACATGGAGAATCTACCTTTTTGAGAGATTG
ACTTCATTCAGTTTTATTCCGTAGCAGGCAGCAATGAAATAGATTCTTTC
TTGAATGATTGAATCTTCGGTATATGTTCGGAATAGTAAATGACCGACTG
AACCACCTCTATGGGTGCTATCAAACATTATACATGGCTCAGGGTCAGTT
CCACACCTAGGTTGCTACTCTTGGTATCCAGTTCAAAACTTGTGAAGTGA
CGTAAAATGAATGGAATAATATCCTTATTTGTTAACAAAAGCCTTCGACT
CAAAGGAATAGACAAACGACACAAGGAAAGATAACAAACATCTTTGAAGT
TTATGGGATTCCTTATCCAATCATTAATTCAATCTTGGCACATTACCACG
GAACAAATGCCTTCGCCTGATAGAGATACAGATCCCTTTGATATAAGTGA
TGACACCTTTTCTATTTTATGTGGCTATGATATGTACTGGTGAAGACTTC
TCTCAATCGTCACTTAACCAGAAGTCTATACTACACCTCCTAGATGCAGT
ACAAACACAGGCTGAGCTTCGAGTAGTGCTGAACATCTCCTGGCGTGAAC
ATCCAACTACATAGCGCTTCTATAAAAAACTATCTACTAATTCTTCTCAA
ACCATTATAAAATTTCGTATCACATGCTTGCCTGTGACTCGAACATGAGT
AAAGACAAGCTTGCCAGTGAAGTTATCACCTCGTAACCAAAACAGGAAAG
AGCAAATGTTGGAAATAGACCACACTAAACTTACTACCAACTACATAGTA
TTGAAGACACTGGCTGTAAAACCAACGAAATCGAAATCACTGAACGCGAA
ACTCTGATGGCAGACAGGGATGTATGGAGATAGATGATCAGATTGTCTAG
TTAATCAATAACCCGTCCGTCGTGTAAGGGTAGTGATAGTGTTTAGTATT
GCCTGGCTGTCATATGTACAGAAAGATTACACAACCAGATGCCCAGGAGT
TGCTGACGTCACAATGTCGGCTTGCTTTATAGTtctttggttgattttga
tGAGTATCTGAAAAGGATTTCATAAGAAATGGTGATCGCACTGAGTATTT
ATGGACAGGATGATGTTAGCAAGACAAAAATGTCCTCAGTATTATGACAT
ACAAATTTGATGGGGGACTTTCGTTCCTCTTCCCAATTTACGATACTCAG
TTGTAATGATGTCTGCTCCCTTTGTAAACGATTGATAACATATACTTATA
TGATACTTAGATACTTTCATGCTATGATAGCAGGAAGCTTGTAATCCTAG
GAGGGAACATTGAGTGTCAAAGTAGTAGTGTAGTAGTAANTCAGGAAGCT
TGTAATCCTAGGAGTGGAACATTGAGTGTCAAAGTagtaatacaataatg
accggttagtgagggttgtactgagaaatattgcccgaggtcaagaaACG
ACcaagcttgcgaggttgttgtgTTGACcaagggcaatattttcagtaca
gcccgaaaataaccggtcattattgtatttgttaaccgtttccttcagct
tcgattgatttttagcgctttatccaggaaaaatagcaaaataaagcgaa
aaaaaatatgcgaaaagagataaaaattgttataatttctgaccACAGAA
ATAAAAANCatgcgaaaagagataaaaaaaatttataatttctgacgtca
gaaataaaaaaatgagagaaatgatgtcaacgcattgttcattttccttt
gaaaaagtgacatcacaatgaattttcctaacgacgggcaactctggaca
gtctaggcccgtcgtcatgcaaaaagtaccaattgcattgcgcaaaaagc
cgtgtagctcGCTTTGAAAAAGTAGTCGGTTAACAATGTTCAGTGATGCC
TAACACTTGCATTTTTCAGAAGtaaaaattatgacgtcaattATATATAG
CTTCTTCTGTTTTTTACTCACATTGAGTAAATTTTTAAACTATTTTGTAA
GCAAATAAGTTGTTTAGCATGAAAaatcctttccaacggtatataacact
CAATAGTTTAgagcaaatgtcaaattttgggaaaacgatgacgtcatttt
gacaCCTTCCATCGTGTTTTACTCACATTAAGTACATTTTCAGACTTTct
cgtaagcaaaaaagttgttcagcgtGAAAAATACTTTCcaatggtatata
atatgcctaTGTTTGAAGACAAAGTGTGCAAAGTGGCCGGCGGTTTTTCA
CTCCTAGGGACCtaatgaacacatttcaatcaaaaaattccatTTGTACG
CAAATTTTGGGTTCCCTAAAAAGAGCCAGAAATTCCCCCGGACTAAGGGT
CAATTTTGCCCACCTGCCATAggcgtgtattttacagaccggcccaaatt
tgcctaaattAGTCCTAAATTTTTATATCTCAAGATTGGAAAATGCTATT
GTCTTGAAATTTGATCAGTGGTAGGTATTGATAATGGAAACTTGCTCTCA
AAATTTTAGCGAAATCGGACCATTAGTTATGCAGAAGGTGAGCATTTAAG
GTAAAATACTGAccgttctgtaaaataccaaccgcACAGGTGGccgactt
gaaattttgcacattgtCTTAGATGGTCAAGACCtatcactggtgaaaat
ttcaagtcctTGAGTTCCGGAAAAGGggggtgtgtattttacagaccagt
ctgtaAAGTACCAAATACCACCCTGGAACTATTCTTTTTCGGTTTAGTCT
GATTGGATTTGGCAAATACACGCAATTTCAACGAAGCCAATTGGATAATT
CATTCTAGCAGCTAATTtattattctggtctgtaaaataccaactaaACA
GGTGGCCGACCTGAAAATTTGTAAATCATCTTCATTTGTCAATATCTGTC
ACTGGTGAAAGTtcatagcacttgtcaatcttgagatCCGAGGGGCGGGC
TAACATGCCCCTCAAGATGCTCTGCATataaaaaaataggaagatgcaCG
AAGGGTTAAACAATAAAGCTGTGTGTCCACTGAAATTAAGCTATTGCAAA
TAGTTTGCAATGAATAAATTTCTTGTCGCGAATTCTTTATCGCAAGCACG
TGTTCACAATGTCcatctaaaaaataaatatttacgaAATATTTCGGCGA
TCATGAAAATAAGTTTTGTATTTAACTCTTTCCGTTAGTTTTTTAGAACT
TCCAACTTCAGATGCAATTATCTCAGCTTCCGAGCAATCTTAATATGTGT
GGGTTTGTTGCAAAGCTCTTTTCATGCTTTATCTTTTCAGTGTGCCAGAT
TTTTTAATTAGGTCCTCAAAAATAATTAGGGCAGCCGAAAAATATCGTTC
CAAATTGAACGAAAGTAGCTGGGGCCGACAGGAAAGTGTTAAAAGAAATG
TGTTCAAAAAAGATGTATCTTAACTTATCTCCATGGTAAcacaaaataca
aatttattaaaaacaaaCGCAAACCGCAAACGCAttgaaaacgttttcat
tttcTATTGCCAATTATTCGGAATTAATTTTGATTCTAAGACAAAAAATA
TTTAGCGATGAAATGTGtccactggaatttttttttcgatggaCAAATGT
TTTCGCGATGATCATTTGCGACGGACATATTTTCTTTCAGTGGACACGCA
GCTTAATTAAAAGTATATATTTCCTGAAAGATCATGagatttcttaaaaa
tgatgGTGTTCATTAAAATCCTATCTGGTATACTGAATAGGAGCAATTAT
TAAGAGACCAAATTTTGACCTAGTTACATTCAAAAGAGATGAATTCACTC
ATAGCTTTCCCAACtggcacacagcgttgtttcaacgttcatctagcaTC
Cagaacgttcatttaacgttagatgaacgttaaaacaacgttgtgtggca
GCTGGGTTGAGCTATCTATATGATTACTAAAAAGTAAACCCTGGCACTTA
AAGGTTTAATTCTAATCAACTCATTCGATCTTCCATACAGTGCAATAATG
GAAAAGCTGATCTTCATTGGTGTCATTCTTTGTATGTGTTGCCCATGCGC
AGATGCATACAAATCACCGTACATTTGGGGGGACCAATACTCTGGTGGAT
TTGTTGGCTCTACCATATATTGTGATCCAAAGAAGCCATNAATCACCGTA
CATTTGGGGGGACCTTTATCATGGTAAATTTATTGGCTCTACTATATATT
GTAATCCAAAGCCATACGTCCCCGGTGGTGGTATACAAACGATCCAACAA
ATTAAGGCTCCCAAAGCTACACTTGAAGAAAACGAAGTCCTCAGTGGTTT
TTCAGCAGGTACCCAAGGAACAGGATTTATTGCAGGACTTACAGGTTTCA
TTGGAGAAGGGTCgtccaaaataaaaaacattcaaaaactttttaatacT
GCTTCAAAGATGGCATCGACCATGTGGTTTGTCAGTGGAATCTTGTCTTA
TCTTGGAGGTGAACCGAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042406-exon-sc0003401-1491911889:4896..4999 | TCONS_00042406-exon-sc0003401-1491911889:4896..4999 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1510915933:4896..4999 | TCONS_00042406-exon-sc0003401-1510915933:4896..4999 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1575043694:4896..4999 | TCONS_00042406-exon-sc0003401-1575043694:4896..4999 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1491911889:11636..11722 | TCONS_00042406-exon-sc0003401-1491911889:11636..11722 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1510915933:11636..11722 | TCONS_00042406-exon-sc0003401-1510915933:11636..11722 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1575043694:11636..11722 | TCONS_00042406-exon-sc0003401-1575043694:11636..11722 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1491911889:11797..12115 | TCONS_00042406-exon-sc0003401-1491911889:11797..12115 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1510915933:11797..12115 | TCONS_00042406-exon-sc0003401-1510915933:11797..12115 | Clytia hemisphaerica | exon |
| TCONS_00042406-exon-sc0003401-1575043694:11797..12115 | TCONS_00042406-exon-sc0003401-1575043694:11797..12115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003401 | supercontig | sc0003401:4896..12115 + |
Blast
The following BLAST results are available for this feature:
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