TCONS_00042404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042404
Unique NameTCONS_00042404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042404 ID=TCONS_00042404|Name=TCONS_00042404|organism=Clytia hemisphaerica|type=transcript|length=523bp
ACaattttctattctttttcatttcaggaTGGCTGCCATTCAAATGCATG
TGAATAGATGCAACATCCCGTCATTCAAATTATCATTAACAATTTACGAT
TGATGGTgttttccatataaggtaattgaattcattttgttttaaagttt
ttctaGTATTGTTCAATTATCTCTTTAGGAATATTCTCTTCAGGTTCCCA
AGANTTCCAGTATTGTTCAATTATCTCTTTAGGAATATTCTCTTCAGGTT
cccaagaattttcttctttttcgtaGTTTAGCCATTTCACCAGGAATTTG
GTTCcctttttgttccttttgtGTTTGATCAATTTCTCCACCAAGTAGTA
GTCTTCTGGTAGTTGTTCCTCATGATCGTGTTGAATTTCGGCCTCTCTTA
CTGTTTCTATGTCATTTTCTGACTCTTGGGGTTCGTCGCTTGCTACTCCA
TTTTGGGTTTGTCTCGTCTTTGTGTTTTGCTCTTCCTCCAGCTTCTTCCA
AGGCTTCATGCGGTCGTAGTGNN
Run BLAST on NCBI

protein sequence of TCONS_00042404-protein

>TCONS_00042404-protein ID=TCONS_00042404-protein|Name=TCONS_00042404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
HYDRMKPWKKLEEEQNTKTRQTQNGVASDEPQESENDIETVREAEIQHDH
EEQLPEDYYLVEKLIKHKRNKKGTKFLVKWLNYEKEENSWEPEENIPKEI
IEQYWXSWEPEENIPKEIIEQY
Run BLAST on NCBI

transcript from alignment at sc0003398:11481..12003

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042404 ID=TCONS_00042404|Name=TCONS_00042404|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at sc0003398:11481..12003 (Clytia hemisphaerica)
NNCACTACGACCGCATGAAGCCTTGGAAGAAGCTGGAGGAAGAGCAAAAC
ACAAAGACGAGACAAACCCAAAATGGAGTAGCAAGCGACGAACCCCAAGA
GTCAGAAAATGACATAGAAACAGTAAGAGAGGCCGAAATTCAACACGATC
ATGAGGAACAACTACCAGAAGACTACTACTTGGTGGAGAAATTGATCAAA
CacaaaaggaacaaaaaggGAACCAAATTCCTGGTGAAATGGCTAAACta
cgaaaaagaagaaaattcttgggAACCTGAAGAGAATATTCCTAAAGAGA
TAATTGAACAATACTGGAANTCTTGGGAACCTGAAGAGAATATTCCTAAA
GAGATAATTGAACAATACtagaaaaactttaaaacaaaatgaattcaatt
accttatatggaaaacACCATCAATCGTAAATTGTTAATGATAATTTGAA
TGACGGGATGTTGCATCTATTCACATGCATTTGAATGGCAGCCAtcctga
aatgaaaaagaatagaaaattGT

Coding sequence (CDS) from alignment at sc0003398:11481..12003

>TCONS_00042404 ID=TCONS_00042404|Name=TCONS_00042404|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0003398:11481..12003 (Clytia hemisphaerica)
CACTACGACCGCATGAAGCCTTGGAAGAAGCTGGAGGAAGAGCAAAACAC
AAAGACGAGACAAACCCAAAATGGAGTAGCAAGCGACGAACCCCAAGAGT
CAGAAAATGACATAGAAACAGTAAGAGAGGCCGAAATTCAACACGATCAT
GAGGAACAACTACCAGAAGACTACTACTTGGTGGAGAAATTGATCAAACa
caaaaggaacaaaaaggGAACCAAATTCCTGGTGAAATGGCTAAACtacg
aaaaagaagaaaattcttgggAACCTGAAGAGAATATTCCTAAAGAGATA
ATTGAACAATACTGGAANTCTTGGGAACCTGAAGAGAATATTCCTAAAGA
GATAATTGAACAATACtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026248XLOC_026248Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042404-proteinTCONS_00042404-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042404-exon-sc0003398-1491911889:11481..12003TCONS_00042404-exon-sc0003398-1491911889:11481..12003Clytia hemisphaericaexon
TCONS_00042404-exon-sc0003398-1510915933:11481..12003TCONS_00042404-exon-sc0003398-1510915933:11481..12003Clytia hemisphaericaexon
TCONS_00042404-exon-sc0003398-1575043694:11481..12003TCONS_00042404-exon-sc0003398-1575043694:11481..12003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003398supercontigsc0003398:11481..12003 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.469521	0.125878	0.668007	1.5019	0.457106	0.722422	1.6107	1.35992	0.688887	0.49037	1.08501	2.33778	2.16107	2.68255	0.470562	3.74159	1.05817	1.4354	0	0	1.15185	1.00537	0.278884	0.128115	0.485234	3.27787	0.666191	0.184583	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR023780Chromo_domain
IPR023779Chromodomain_CS
IPR016197Chromodomain-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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