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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042400 ID=TCONS_00042400|Name=TCONS_00042400|organism=Clytia hemisphaerica|type=transcript|length=593bp
GGTCTGAGCTCGAGGGCCTGAGCCCCACTCTATTGATGTCTATTCATTTT
TCAGTTCATTAACATCGTGTTGGCTCAGTCCCAACCTCCTTTGCATTATT
CATTATAGTTTActattcatcatcatcaaccTCACATCTCCGACGTTCGA
CAAGTGACGTCCTcgtcactttttaaaaaaaatttgtcaatttgTTGATa
gttaatgatctaccaacTGCACTACCGTTAAATTCACCTTTTCAATTGTC
GGATTGTGATGATTTTGATAAGACGCCATTCTTGTGCGTCCGTGAGTGTT
GTCTATTCAACGTTAGTTGAGTCTTCATTCGTTCACTTGGGATGATAAGT
TCGTTTTGTTTGAGTGAGCCTCATTTGCTTACTGAGTTTTTAATCGTTCG
TTTGGACttgattttataatttatcaatcacgtttttttaaatgttctac
TTCTTCGTTGCGCTGTCCTTTCCTACCATCAAGAGGAAACGAACTCCACG
GGAGTCATTATTCACCGAAGAGATAACACCGATCGTGGGTCGCGGCCGTC
ATCATTTTGGCCAGTGCTTCCTTGGGATGGGTTTCCACCTCAG Run BLAST on NCBI transcript from alignment at sc0003397:16406..17479- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042400 ID=TCONS_00042400|Name=TCONS_00042400|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at sc0003397:16406..17479- (Clytia hemisphaerica)
GGTCTGAGCTCGAGGGCCTGAGCCCCACTCTATTGATGTCTATTCATTTT
TCAGTTCATTAACATCGTGTTGGCTCAGTCCCAACCTCCTTTGCATTATT
CATTATAGTTTACTATTCATCATCATCAACCTCACATCTCCGACGTTCGA
CAAGTGACGTCCTCGTCACTTTTTAAAAAAAATTTGTCAATTTGTTGATA
GTTAATGATCTACCAACGTAAGATATTTTTTCAGTCTCTTTATTATTTCT
TTCAATGCGCATTGTAAAAATTCATAAGTTTTTCATAGTTCGGTAATTCA
TAATAATTCATTCATAATACTGCAGTTTAAACAATTCATAATACTATAAT
TCATATCTACCATATGCATGTTTCAATCGGAAATCACGCCCTTAAGCCGG
CCGAACGTGATTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNATATAAACAGCATTTCATTCTTCATTATGCTGAATGTGTATTTCA
ATTATCCATTCTTTAATTTTGAATTCAAAAGTTATTTTTGATACGTAGTG
CACTACCGTTAAATTCACCTTTTCAATTGTCGGATTGTGATGATTTTGAT
AAGACGCCATTCTTGTGCGTCCGTGAGTGTTGTCTATTCAACGTTAGTTG
AGTCTTCATTCGTTCACTTGGGATGATAAGTTCGTTTTGTTTGAGTGAGC
CTCATTTGCTTACTGAGTTTTTAATCGTTCGTTTGGACTTGATTTTATAA
TTTATCAATCACGTTTTTTTAAATGTTCTACTTCTTCGTTGCGCTGTCCT
TTCCTACCATCAAGAGGAAACGAACTCCACGGGAGTCATTATTCACCGAA
GAGATAACACCGATCGTGGGTCGCGGCCGTCATCATTTTGGCCAGTGCTT
CCTTGGGATGGGTTTCCACCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042400-exon-sc0003397-1575043694:17263..17479 | TCONS_00042400-exon-sc0003397-1575043694:17263..17479 | Clytia hemisphaerica | exon |
| TCONS_00042400-exon-sc0003397-1575043694:16406..16781 | TCONS_00042400-exon-sc0003397-1575043694:16406..16781 | Clytia hemisphaerica | exon |
| TCONS_00042400-exon-sc0003397-1510915933:17263..17479 | TCONS_00042400-exon-sc0003397-1510915933:17263..17479 | Clytia hemisphaerica | exon |
| TCONS_00042400-exon-sc0003397-1510915933:16406..16781 | TCONS_00042400-exon-sc0003397-1510915933:16406..16781 | Clytia hemisphaerica | exon |
| TCONS_00042400-exon-sc0003397-1491911889:17263..17479 | TCONS_00042400-exon-sc0003397-1491911889:17263..17479 | Clytia hemisphaerica | exon |
| TCONS_00042400-exon-sc0003397-1491911889:16406..16781 | TCONS_00042400-exon-sc0003397-1491911889:16406..16781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003397 | supercontig | sc0003397:16406..17479 - |
Blast
The following BLAST results are available for this feature:
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