TCONS_00042398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042398
Unique NameTCONS_00042398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042398 ID=TCONS_00042398|Name=TCONS_00042398|organism=Clytia hemisphaerica|type=transcript|length=695bp
attatatatgtgttaaattcataaccagTACAAACTATCGAAGGAGGATT
TGTTGCAAAAGACGTTACAGTTGACCATTTGGAACCATGATCGACTTGGG
AAGAATGATTGTCTTGGTGAAGTTCAACTTAACATGAAACAATATGCAAA
CACCAATAAATTGAATGAAGAGCAACCTGTCTGGTACACTTTACAATCAC
CCGCGCCCGTTGTTGGTGGAGGAGCAGACGACAATATTGGCGAATTAGTT
CTCGGTTTGAAATATGACAACGAGCAACTTATTGTCACTGTCAAGGAAGC
CAAAGGCTTGACCTCACTTACACCTAACAAAATGCCCAACCCCTTCGTTA
AATGCTACCTATTACCAGATAAAAGTCGGAAATCAAAGCGCAAGACGGGT
GTTCAAAAGAAGACGAACAATCCTATGTGGAATGAGAAATTCACTTATAA
ACATGTCTCCATCGACGACTTGAACACGAGAGCTATCGAAATCACTGTCT
GGGATTATGACTCGTCTGCTCATCAGTTCTTAGGTAAACGCTGTGTGTTT
TCATTGGNAGAAGCGTGAACCATTGATGTCATTGAGCTTCGATGTTGTCC
ATGTATATCCTCCactgaaaagaaatttgattggctacgTAGTTTAATGT
GTCACTATGTTTTGGATCAAATTTTTTAGCCCCCCTGCTAAATTG
Run BLAST on NCBI

protein sequence of TCONS_00042398-protein

>TCONS_00042398-protein ID=TCONS_00042398-protein|Name=TCONS_00042398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MKQYANTNKLNEEQPVWYTLQSPAPVVGGGADDNIGELVLGLKYDNEQLI
VTVKEAKGLTSLTPNKMPNPFVKCYLLPDKSRKSKRKTGVQKKTNNPMWN
EKFTYKHVSIDDLNTRAIEITVWDYDSSAHQFLGKRCVFSLXEA
Run BLAST on NCBI

transcript from alignment at sc0003397:2250..4665+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042398 ID=TCONS_00042398|Name=TCONS_00042398|organism=Clytia hemisphaerica|type=transcript|length=2416bp|location=Sequence derived from alignment at sc0003397:2250..4665+ (Clytia hemisphaerica)
attatatatgtgttaaattcataaccaggtaggtccaaaaaagtatcaat
tgttggaagttcttttttgaataaatttgaCTATATCCGCGTGACTTTTT
CCTTGTGTTTATTGATTTCATGAAACTAAATCAGGAATACATTTGCTCTA
AAGAATACATTTCTCAGAGTCAGTTCGATCGATCATCAGTCAGATCACGC
GGCCAAGAACTCACTTTTAGCGcgccttttttattttgtttgctGTTATT
ACTCAAAAGAAATCCGATTTAAGCAATGTTTTCTTCCCGTGTCTATGGAC
AAAAGTTTTGAGTCTATCGGGGTTTTTTTTCGCTCTCATCTTGTGCCATG
AAAGCAAAAAATTGGATCGTGGTACATGTAGTTTGATTCTAGTGTTTGTG
GTGACGCAATTTACTTCAAGTTTGTGGCTCGTGAAATGTCAATGATTTAA
AGATCATTTATGCGGATGTGGCAAAATGTTCTCCGGGAATTGTAGGGTAT
CATTCTATCTTTTACTCTCGATACCCAAAGGACAACACCCAACGCAATTT
TGCTCTATCgttcaatttttcgtttttctccAGTACAAACTATCGAAGGA
GGATTTGTTGCAAAAGACGTTACAGTTGACCATTTGGAACCATGATCGAC
TTGGGAAGAATGATTGTCTTGGTGAAGTTCAACTTAACATGAAACAATAT
GCAAACACCAATAAATTGAATGAAGAGCAACCTGTCTGGTACACTTTACA
ATCACCCGTAAGCTCTTACTTTTTCTCTCACCTTTCTCGCTATAAGGACT
AATTCAATCGAGGCTGTGACTATTACCCTCTTTAAAACGGAATTCCTTGA
GATCTTCGgatttctaaaaaatcaaaCTATTTCTATAATGAAGAGTAAAG
GCAAACTTAAACTTTGATGGGTCACTTATCAAATTTGGttcactagatca
aaagttatgattttataaaaaataaatcgtTTTCTGAGATTgctcaaaaa
aaacttcgaaaatcGAATTTTGACAGAAACATGACTGCATGTAGCATTGG
TTTTCATTGTTTAAGTAATTAAAAGAATAACTAAGCGTCTTACAATGCAA
GGAAAAAAGGATGTCAGGCTTAAGGCTACAAAAAATCTCATTAAAGTGAA
AATACCGGGTGGTCCAGAAAAAACATGTCGAAACTTATAACGTCTCGAGA
AGTAATCGTCAAAAATCACTcaaatttatatatttatatatgGTATTTCT
AGCAGAAATGTAATTATTGACGAAATCAGCATCACTTTAAAATGGggttt
ttaaccaaaaatagAGAAAGGTAATTATTTACAGTCTCTTTCAATAAACT
CACCAGTTTTGCGAGCATAAAACTTTTGATATTGTGGACCAAACTCAATG
AATGactcatcaaaatttaaattcatcCTTTCTCTTTCTAATGAAAAAGG
TTTGAGTCCTAAAGAATTCATATAACTTGAGAAGTTTCACCtaaaagagg
gtaacttatttctggCACACCTGATACAACCTTGAAATAGGACTAAACAA
AAAGTACTATAAAGCAGAAGTTAGTCGGGAAGAAATCCATCACTAAGATT
TTATTGTTCAAAATTAACGGGTTCGTTATAAAGATTTTCACAAACCTTTA
AAAGGTATTCATCATTTTTCTCGTTTTAGGCGCCCGTTGTTGGTGGAGGA
GCAGACGACAATATTGGCGAATTAGTTCTCGGTTTGAAATATGACAACGA
GCAACTTATTGTCACTGTCAAGGAAGCCAAAGGCTTGACCTCACTTACAC
CTAACAAAATGCCCAACCCCTTCGTTAAATGGTAAGATAAAGCTGTCGTC
TTTCGTGACTGACCATTTGATCCCATCATGTAATTGATGCCATCTGAAAT
TTTATTGCTTATGATGCGAAGATttatttactttaaaaaatgtaGCAGTA
TTATCCTACATTCCTACAGTATTATCCTATCCTACTAACTTACCAAAAAC
CAATGATTTCATATTGTTTCTGCCTTTGCGACTATGAAATACATACCTTA
ATCGAAAAGCAATTTTCTGTTTTAGCTACCTATTACCAGATAAAAGTCGG
AAATCAAAGCGCAAGACGGGTGTTCAAAAGAAGACGAACAATCCTATGTG
GAATGAGAAATTCACTTATAAACATGTCTCCATCGACGACTTGAACACGA
GAGCTATCGAAATCACTGTCTGGGATTATGACTCGTCTGCTCATCAGTTC
TTAGGTAAACGCTGTGTGTTTTCATTGGNAGAAGCGTGAACCATTGATGT
CATTGAGCTTCGATGTTGTCCATGTATATCCTCCactgaaaagaaatttg
attggctacgTAGTTTAATGTGTCACTATGTTTTGGATCAAATTTTTTAG
CCCCCCTGCTAAATTG

Coding sequence (CDS) from alignment at sc0003397:2250..4665+

>TCONS_00042398 ID=TCONS_00042398|Name=TCONS_00042398|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0003397:2250..4665+ (Clytia hemisphaerica)
ATGAAACAATATGCAAACACCAATAAATTGAATGAAGAGCAACCTGTCTG
GTACACTTTACAATCACCCGCGCCCGTTGTTGGTGGAGGAGCAGACGACA
ATATTGGCGAATTAGTTCTCGGTTTGAAATATGACAACGAGCAACTTATT
GTCACTGTCAAGGAAGCCAAAGGCTTGACCTCACTTACACCTAACAAAAT
GCCCAACCCCTTCGTTAAATGCTACCTATTACCAGATAAAAGTCGGAAAT
CAAAGCGCAAGACGGGTGTTCAAAAGAAGACGAACAATCCTATGTGGAAT
GAGAAATTCACTTATAAACATGTCTCCATCGACGACTTGAACACGAGAGC
TATCGAAATCACTGTCTGGGATTATGACTCGTCTGCTCATCAGTTCTTAG
GTAAACGCTGTGTGTTTTCATTGGNAGAAGCGTGAATGAAACAATATGCA
AACACCAATAAATTGAATGAAGAGCAACCTGTCTGGTACACTTTACAATC
ACCCGCGCCCGTTGTTGGTGGAGGAGCAGACGACAATATTGGCGAATTAG
TTCTCGGTTTGAAATATGACAACGAGCAACTTATTGTCACTGTCAAGGAA
GCCAAAGGCTTGACCTCACTTACACCTAACAAAATGCCCAACCCCTTCGT
TAAATGCTACCTATTACCAGATAAAAGTCGGAAATCAAAGCGCAAGACGG
GTGTTCAAAAGAAGACGAACAATCCTATGTGGAATGAGAAATTCACTTAT
AAACATGTCTCCATCGACGACTTGAACACGAGAGCTATCGAAATCACTGT
CTGGGATTATGACTCGTCTGCTCATCAGTTCTTAGGTAAACGCTGTGTGT
TTTCATTGGNAGAAGCGTGAATGAAACAATATGCAAACACCAATAAATTG
AATGAAGAGCAACCTGTCTGGTACACTTTACAATCACCCGCGCCCGTTGT
TGGTGGAGGAGCAGACGACAATATTGGCGAATTAGTTCTCGGTTTGAAAT
ATGACAACGAGCAACTTATTGTCACTGTCAAGGAAGCCAAAGGCTTGACC
TCACTTACACCTAACAAAATGCCCAACCCCTTCGTTAAATGCTACCTATT
ACCAGATAAAAGTCGGAAATCAAAGCGCAAGACGGGTGTTCAAAAGAAGA
CGAACAATCCTATGTGGAATGAGAAATTCACTTATAAACATGTCTCCATC
GACGACTTGAACACGAGAGCTATCGAAATCACTGTCTGGGATTATGACTC
GTCTGCTCATCAGTTCTTAGGTAAACGCTGTGTGTTTTCATTGGNAGAAG
CGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026242XLOC_026242Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042398-proteinTCONS_00042398-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042398-exon-sc0003397-1491911889:2250..2277TCONS_00042398-exon-sc0003397-1491911889:2250..2277Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1510915933:2250..2277TCONS_00042398-exon-sc0003397-1510915933:2250..2277Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1575043694:2250..2277TCONS_00042398-exon-sc0003397-1575043694:2250..2277Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1491911889:2833..3006TCONS_00042398-exon-sc0003397-1491911889:2833..3006Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1510915933:2833..3006TCONS_00042398-exon-sc0003397-1510915933:2833..3006Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1575043694:2833..3006TCONS_00042398-exon-sc0003397-1575043694:2833..3006Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1491911889:3929..4080TCONS_00042398-exon-sc0003397-1491911889:3929..4080Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1510915933:3929..4080TCONS_00042398-exon-sc0003397-1510915933:3929..4080Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1575043694:3929..4080TCONS_00042398-exon-sc0003397-1575043694:3929..4080Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1491911889:4325..4665TCONS_00042398-exon-sc0003397-1491911889:4325..4665Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1510915933:4325..4665TCONS_00042398-exon-sc0003397-1510915933:4325..4665Clytia hemisphaericaexon
TCONS_00042398-exon-sc0003397-1575043694:4325..4665TCONS_00042398-exon-sc0003397-1575043694:4325..4665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003397supercontigsc0003397:2250..4665 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.6165	16.2621	3.77754	4.35414	21.0805	13.7177	23.1496	26.7859	14.4938	22.3106	13.6311	15.0509	17.0498	14.4506	8.0016	11.7025	10.9422	10.0586	8.62289	10.5458	9.29516	11.0888	9.15064	11.3455	25.2929	24.374	12.0936	10.7343	8.60984	9.7293
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Blast
[Close]
BLAST of TCONS_00042398 vs. Swiss-Prot (Human)
Match: SYTL4 (Synaptotagmin-like protein 4 OS=Homo sapiens GN=SYTL4 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.133e-28
Identity = 67/189 (35.45%), Postives = 103/189 (54.50%), Query Frame = 2 
Query:   26 QYKLSKEDLLQKTLQLTIWNHDRLGKNDCLGEVQLNMKQYANTNKLNEEQPVWYTLQSPAPVVGGGADDNIGELVLGLKY------------------DNEQLIVTVKEAKGLTSLTPNKMPNPFVKCYLLPDKSRKSKRKTGVQKKTNNPMWNEKFTYKHVSIDDLNTRAIEITVWDYDS-SAHQFLG 535
            +Y++ +  L Q+TLQ ++W+H R G+N  LGE ++ M  +    KL+   P+   + + +P    G   + GELV+ LKY                  +  +L V +KEAK LT+       + FVK YLLP +++ SKRKT V KKT NP +N  F Y  V ++DL    +E+TVWD +  +++ FLG
Sbjct:  429 RYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESPT---GLPSHKGELVVSLKYIPASKTPVGGDRKKSKGGEGGELQVWIKEAKNLTAAKAGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLNPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLG 614
The following BLAST results are available for this feature:
BLAST of TCONS_00042398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYTL41.133e-2835.45Synaptotagmin-like protein 4 OS=Homo sapiens GN=SY... [more]
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