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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042391 ID=TCONS_00042391|Name=TCONS_00042391|organism=Clytia hemisphaerica|type=transcript|length=1517bp
AATTTACTTTGGGAAATATTCTCAGGATTCGTCAAGATAGATAACTGAGG
GTAGGTATGCAAAACTTTAGGGCAAAAATATCATTCCNAAATATTCTCAG
GATTCGTCAAGATAGATAACTGAGGGTAGGTATGCAAAACTTTAGGGCAA
AAATATCATTCCAAAGTTTACGAGAGCTACCCAAtcctttttgccctttt
tggggTTTGACAACGCCCTAAAACATCCGATAAtgagaatttttaaataa
tagtgACAAAATGTTATTGTTTCCAGGTCAAATTGGagatttttttgtca
tactTTATATGAGTCTAATAGGGGGCCAGAAAAGGGGCTcccacattttt
tatatttaaaacatttcaaagattctttttaaTCCTGCGTAAATATACCA
TACGGAGCTAAAAATAATTTAGTTTGacatgatttgacgaaaaaaatgaa
aatgaccctGTACAGCCCACTCCTATTCTTACATCGTTTAAATTGTTATT
GCTACTCACGCAGTGTTTCTTAAGAAAACTGCAGTTTGAGAGTCTCATAA
TACTAGAACAGTGCTCGCATCAATGGATAACGACCGccttaaatttgatg
aagaattcatCGGTTTAGACAATGACTTCGACACTCTCGTTTGcgtgatt
taacttgaaaatatggatattttttataagcattgcacttataagcatat
ctaggctcagttttggggaaaaattaagtatatggcaaacattacttgag
cctacgaaaaatgattttttcctgCTTTTATGGCTGGAATTTTGCGggtt
ttcagtatttccctaattttgtgttttagatttaagcatcccaaacattt
ttcagccttattaagctttgaacctaagcatctctgagcctgttttcaga
tttttgtatgcttataaaaacaagattcgcaaatatgcgacaaaatattt
cccaacaacagcttttaaaattgtaattgaaattattttctaacgatgaa
acaaaaattcttgtcCTNctctgagcctgttttcagatttttgtatgctt
ataaaaaaaacatgtataagcTAAACCACTGTGGCAGTTCTGCTACATAT
GTTCCTTGACGTGGGTTGTGATTTTGATGAGCTAGTATATTCTGAGTTGT
TTAATCACGTGTGGTTTGAATCAGAAGCTAATAAATActttaagtttttt
atttacttaacatTTATCTCCCTAGCGGGGCGCNGATTAATTGATAAATT
TGTACTTACTTTCTGTTGTCCACAATTTCACTATTGCACTGTATACTTCT
TTGCTTGAAATTTGCTTTTCGTTTGTTTTTCAAGTCATACGTTCGTCTCT
TTTTATACTGAGGCTTTATAATAAGAGCTATTTACGattcatttatttca
aaattcatccaATGAGGTGCTCGGAATAGAATGTATCACACGTTAAATAA
TTCCCATTATAATTAAAAAAGTGGTTCGtgaaataatgaaattaaaTGTA
CCAGCTTTGCTAAATTT Run BLAST on NCBI transcript from alignment at sc0003392:4043..5559 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042391 ID=TCONS_00042391|Name=TCONS_00042391|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at sc0003392:4043..5559 (Clytia hemisphaerica)
AAATTTAGCAAAGCTGGTACAtttaatttcattatttcaCGAACCACTTT
TTTAATTATAATGGGAATTATTTAACGTGTGATACATTCTATTCCGAGCA
CCTCATtggatgaattttgaaataaatgaatCGTAAATAGCTCTTATTAT
AAAGCCTCAGTATAAAAAGAGACGAACGTATGACTTGAAAAACAAACGAA
AAGCAAATTTCAAGCAAAGAAGTATACAGTGCAATAGTGAAATTGTGGAC
AACAGAAAGTAAGTACAAATTTATCAATTAATCNGCGCCCCGCTAGGGAG
ATAAatgttaagtaaataaaaaacttaaagTATTTATTAGCTTCTGATTC
AAACCACACGTGATTAAACAACTCAGAATATACTAGCTCATCAAAATCAC
AACCCACGTCAAGGAACATATGTAGCAGAACTGCCACAGTGGTTTAgctt
atacatgttttttttataagcatacaaaaatctgaaaacaggctcagagN
AGgacaagaatttttgtttcatcgttagaaaataatttcaattacaattt
taaaagctgttgttgggaaatattttgtcgcatatttgcgaatcttgttt
ttataagcatacaaaaatctgaaaacaggctcagagatgcttaggttcaa
agcttaataaggctgaaaaatgtttgggatgcttaaatctaaaacacaaa
attagggaaatactgaaaaccCGCAAAATTCCAGCCATAAAAGcaggaaa
aaatcatttttcgtaggctcaagtaatgtttgccatatacttaatttttc
cccaaaactgagcctagatatgcttataagtgcaatgcttataaaaaata
tccatattttcaagttaaatcacgCAAACGAGAGTGTCGAAGTCATTGTC
TAAACCGatgaattcttcatcaaatttaaggCGGTCGTTATCCATTGATG
CGAGCACTGTTCTAGTATTATGAGACTCTCAAACTGCAGTTTTCTTAAGA
AACACTGCGTGAGTAGCAATAACAATTTAAACGATGTAAGAATAGGAGTG
GGCTGTACagggtcattttcatttttttcgtcaaatcatgtCAAACTAAA
TTATTTTTAGCTCCGTATGGTATATTTACGCAGGAttaaaaagaatcttt
gaaatgttttaaatataaaaaatgtgggAGCCCCTTTTCTGGCCCCCTAT
TAGACTCATATAAagtatgacaaaaaaatctCCAATTTGACCTGGAAACA
ATAACATTTTGTcactattatttaaaaattctcaTTATCGGATGTTTTAG
GGCGTTGTCAAAccccaaaaagggcaaaaaggaTTGGGTAGCTCTCGTAA
ACTTTGGAATGATATTTTTGCCCTAAAGTTTTGCATACCTACCCTCAGTT
ATCTATCTTGACGAATCCTGAGAATATTTNGGAATGATATTTTTGCCCTA
AAGTTTTGCATACCTACCCTCAGTTATCTATCTTGACGAATCCTGAGAAT
ATTTCCCAAAGTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042391-exon-sc0003392-1491911889:4043..5559 | TCONS_00042391-exon-sc0003392-1491911889:4043..5559 | Clytia hemisphaerica | exon |
| TCONS_00042391-exon-sc0003392-1510915933:4043..5559 | TCONS_00042391-exon-sc0003392-1510915933:4043..5559 | Clytia hemisphaerica | exon |
| TCONS_00042391-exon-sc0003392-1575043694:4043..5559 | TCONS_00042391-exon-sc0003392-1575043694:4043..5559 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003392 | supercontig | sc0003392:4043..5559 . |
Blast
The following BLAST results are available for this feature:
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