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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042389 ID=TCONS_00042389|Name=TCONS_00042389|organism=Clytia hemisphaerica|type=transcript|length=1155bp
GTGAAATTCCGGACTCGTCACAGTTGAAAATTCGTTCCGGTTGGTCGATG
ATGTCCAATTCTGTCATTAGATCACCTAGCAGCTTGAAATGCTTATCCAT
GACAGTTTGGTTGGCCATTCTGGAACGGCCACGGTCTAATTTGTCAGCCA
CACGTAACGTAAGCGATTCCTTGTGACGGTTTTTGAATTTGCTCCACCAA
GTATCCGTCGGCCCATTGGTTTTGTTAAAACGCGTATTCTTATGTTTTTT
AGCAATGTCCCAAGCAAAAAGCTTGATTTGGGAAACTGTCAGTGGGTGGG
CAATCGAtgccatgtacaaaatatagaaaataagGGCATTTTCTTCCTCT
GACGTAAGTTCAGTTGGTCTACCGATTTTTGTGGATCCCCATCTACCATT
GATTCGATCACTCAACGTTTGCTTAGGAATGCCAAATAATTGCTGAGCCT
TCCCCAAAGACATCCCCTTTTCTTTGACCTCCTTTATTGCATTCTCCATA
TCTTCATCCGTATACTTCGAACGaggttttcgtttttgttttccATTTGA
TGCCATACTAAAAACCAAGAGAAAACCTCGGAAATCTTGTGTATATTCTT
AAGATTCTTATaaaacatgttcttataaaaaaaagggtattcaaaagaaa
aaaaatttaatattgaATATGGTTAACCTATTCTGAGTCTCAAAAGCATT
ACATGACTTCGTATCTATTAGTTTATAAGAAGGATATCCACTACAAACAA
AGTTAAGAAAACCACTTCTAATTCCGGACACCCGAAAATGTGCgtttttc
tcagtttttttaCACCAACTTTACgagatgataaaaataaaaaaaaaacc
gctaggaaggaaattatttttgaaaagtgtcaTTAATTAACATAAATTAT
CATAATAAAAAGAATTAACTACATACCTTGAACGATTGTTTTGATAATTA
AGGATTTGTGATAAGATGTCTGTCGCCCCGAGCTAACCGCAGACAAAAAG
ACCACCAACGAGGGACTATTGTGTATTTTGCCGAACACGGGAAATCGTTA
ACTGTAAGATTAGTggaatcaaaatggtagagGTGCCGTGGAGCTTCGAG
aaaaaaacagttgaaaaaGGCTGGCTTGTTTAAAAGGTAAGGAGAAAAAT
CTGAA Run BLAST on NCBI protein sequence of TCONS_00042389-protein >TCONS_00042389-protein ID=TCONS_00042389-protein|Name=TCONS_00042389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MASNGKQKRKPRSKYTDEDMENAIKEVKEKGMSLGKAQQLFGIPKQTLSD
RINGRWGSTKIGRPTELTSEEENALIFYILYMASIAHPLTVSQIKLFAWD
IAKKHKNTRFNKTNGPTDTWWSKFKNRHKESLTLRVADKLDRGRSRMANQ
TVMDKHFKLLGDLMTELDIIDQPERIFNCDESGIS Run BLAST on NCBI transcript from alignment at sc0003389:3994..5148 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042389 ID=TCONS_00042389|Name=TCONS_00042389|organism=Clytia hemisphaerica|type=transcript|length=1155bp|location=Sequence derived from alignment at sc0003389:3994..5148 (Clytia hemisphaerica)
TTCAGATTTTTCTCCTTACCTTTTAAACAAGCCAGCCtttttcaactgtt
tttttCTCGAAGCTCCACGGCACctctaccattttgattccACTAATCTT
ACAGTTAACGATTTCCCGTGTTCGGCAAAATACACAATAGTCCCTCGTTG
GTGGTCTTTTTGTCTGCGGTTAGCTCGGGGCGACAGACATCTTATCACAA
ATCCTTAATTATCAAAACAATCGTTCAAGGTATGTAGTTAATTCTTTTTA
TTATGATAATTTATGTTAATTAAtgacacttttcaaaaataatttccttc
ctagcggttttttttttatttttatcatctcGTAAAGTTGGTGtaaaaaa
actgagaaaaacGCACATTTTCGGGTGTCCGGAATTAGAAGTGGTTTTCT
TAACTTTGTTTGTAGTGGATATCCTTCTTATAAACTAATAGATACGAAGT
CATGTAATGCTTTTGAGACTCAGAATAGGTTAACCATATtcaatattaaa
ttttttttcttttgaatacccttttttttataagaacatgttttATAAGA
ATCTTAAGAATATACACAAGATTTCCGAGGTTTTCTCTTGGTTTTTAGTA
TGGCATCAAATggaaaacaaaaacgaaaacctCGTTCGAAGTATACGGAT
GAAGATATGGAGAATGCAATAAAGGAGGTCAAAGAAAAGGGGATGTCTTT
GGGGAAGGCTCAGCAATTATTTGGCATTCCTAAGCAAACGTTGAGTGATC
GAATCAATGGTAGATGGGGATCCACAAAAATCGGTAGACCAACTGAACTT
ACGTCAGAGGAAGAAAATGCCcttattttctatattttgtacatggcaTC
GATTGCCCACCCACTGACAGTTTCCCAAATCAAGCTTTTTGCTTGGGACA
TTGCTAAAAAACATAAGAATACGCGTTTTAACAAAACCAATGGGCCGACG
GATACTTGGTGGAGCAAATTCAAAAACCGTCACAAGGAATCGCTTACGTT
ACGTGTGGCTGACAAATTAGACCGTGGCCGTTCCAGAATGGCCAACCAAA
CTGTCATGGATAAGCATTTCAAGCTGCTAGGTGATCTAATGACAGAATTG
GACATCATCGACCAACCGGAACGAATTTTCAACTGTGACGAGTCCGGAAT
TTCAC Coding sequence (CDS) from alignment at sc0003389:3994..5148 >TCONS_00042389 ID=TCONS_00042389|Name=TCONS_00042389|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0003389:3994..5148 (Clytia hemisphaerica)
ATGGCATCAAATggaaaacaaaaacgaaaacctCGTTCGAAGTATACGGA
TGAAGATATGGAGAATGCAATAAAGGAGGTCAAAGAAAAGGGGATGTCTT
TGGGGAAGGCTCAGCAATTATTTGGCATTCCTAAGCAAACGTTGAGTGAT
CGAATCAATGGTAGATGGGGATCCACAAAAATCGGTAGACCAACTGAACT
TACGTCAGAGGAAGAAAATGCCcttattttctatattttgtacatggcaT
CGATTGCCCACCCACTGACAGTTTCCCAAATCAAGCTTTTTGCTTGGGAC
ATTGCTAAAAAACATAAGAATACGCGTTTTAACAAAACCAATGGGCCGAC
GGATACTTGGTGGAGCAAATTCAAAAACCGTCACAAGGAATCGCTTACGT
TACGTGTGGCTGACAAATTAGACCGTGGCCGTTCCAGAATGGCCAACCAA
ACTGTCATGGATAAGCATTTCAAGCTGCTAGGTGATCTAATGACAGAATT
GGACATCATCGACCAACCGGAACGAATTTTCAACTGTGACGAGTCCGGAA
TTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042389-exon-sc0003389-1491911889:3994..5148 | TCONS_00042389-exon-sc0003389-1491911889:3994..5148 | Clytia hemisphaerica | exon |
| TCONS_00042389-exon-sc0003389-1510915933:3994..5148 | TCONS_00042389-exon-sc0003389-1510915933:3994..5148 | Clytia hemisphaerica | exon |
| TCONS_00042389-exon-sc0003389-1575043694:3994..5148 | TCONS_00042389-exon-sc0003389-1575043694:3994..5148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003389 | supercontig | sc0003389:3994..5148 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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