TCONS_00042389-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042389-protein
Unique NameTCONS_00042389-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length185

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042389-protein ID=TCONS_00042389-protein|Name=TCONS_00042389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MASNGKQKRKPRSKYTDEDMENAIKEVKEKGMSLGKAQQLFGIPKQTLSD
RINGRWGSTKIGRPTELTSEEENALIFYILYMASIAHPLTVSQIKLFAWD
IAKKHKNTRFNKTNGPTDTWWSKFKNRHKESLTLRVADKLDRGRSRMANQ
TVMDKHFKLLGDLMTELDIIDQPERIFNCDESGIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026233XLOC_026233Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042389TCONS_00042389Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007889HTH_Psq
IPR011991WHTH_DNA-bd_dom
IPR006600HTH_CenpB_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007889DNA binding HTH domain, Psq-typePFAMPF05225HTH_psqcoord: 16..55
e-value: 3.4E-9
score: 36.2
IPR007889DNA binding HTH domain, Psq-typePROSITEPS50960HTH_PSQcoord: 6..58
score: 16.47
NoneNo IPR availableGENE3D1.10.10.60coord: 72..129
e-value: 3.0E-4
score: 20.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 1..71
e-value: 3.9E-5
score: 23.0
IPR006600HTH CenpB-type DNA-binding domainPFAMPF03221HTH_Tnp_Tc5coord: 69..131
e-value: 2.1E-6
score: 27.6
IPR006600HTH CenpB-type DNA-binding domainPROSITEPS51253HTH_CENPBcoord: 59..134
score: 8.896
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 10..65

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042389-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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