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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042382 ID=TCONS_00042382|Name=TCONS_00042382|organism=Clytia hemisphaerica|type=transcript|length=1251bp
TGATGGAGAGCATAAAGCCCATTCGTATCATTCAAAGTGTGCGAAATGCT
CCAATACCCATTACTATGGATTTACAGAAAATAAGAAACTTTGTCAAAAG
ACTTTCGATTTCAGCAACTGTGAGGTATTGTTGTTCAATTCTggcattgc
attcaccagaaaaTTGTTAGAAATGACAGACAATATGATCTGCATCGGCG
GAGTGTCATTTGAGAAAGCTGCTGATATAATCAGTACAACTGGACATATA
ATGGACAGGATTAATCCTGATAGGTTGGAAACAGCGTGGTATATTTATCG
TATTATTGAATACCAGATAACTTTATATTGGCCGAGAAAGAAAGTATCAA
AGGAATTAGATGTTGAAGCACTGTGTGGAATGGTCTATGAAGAAATCAAA
TCGGAAGCGGATTCAAAGTGGCTGAGACATATATGTACAGAGCCTGGCTg
caaagaaagatttattgTAATCGATGGCAACGAAAAACTGCATCGACTGA
TATGTGATGCACCCAAAACGCGTGTTTTAGGTTGCGGTGGAGAGGTGAAC
TCATATGAGTTGTGCATACAAAATCCCCAGAGAGGTAACCAAATCAAAGT
TCTGTCAtgtacatgaaaatgaaaaaaacggtGAAACAATAACGCAACTG
GACATGAGACCGTTCACCAGACAATTTGctaaaaatttagacaatgtAGT
TGTCGATGAAGATAGCTGTAAGAAAGAGGAGAATGTCGATCGTTTTCATT
CGAGGACAGCAGGAATGTTTTATTTATTCAGACCCTGTGGTATACGTTTA
TCACACTATGAAATGTACACTTCAGAGTCGTTATCTTCAGTATTCTTGTA
TCTTATTGACACGTTTGGAGAAACAGCTCAAAATTTATCTGGAATTGTGT
ACGATCGTTCGTGTGGATTGCATCCTTTCATACAACGGTTGAGTAACGAG
GGGAATCTAATTGCAAAAAAATACGAGGCGCTAGATTTCATCGTGGATAT
ATTTCATGTCGAGAAACATACTCAGCCAAAATGTATGCTTCCACATGTTG
ATTGTCTTTATCATCCATTTTTAGACAGATTTGGTCGCGTGCGAGGACTT
AACACCGAAGTAGCTGAACAGTCTAACAGTCAACTTAATCGTTTTAAGTA
TATGACTCGAAAAATGAGCTACTGCAAAAggttgttattttttaaattta
ttgatGACACTCATAACAAAATTTGTTTGGCAAAATCCAAGCataaatca
a Run BLAST on NCBI protein sequence of TCONS_00042382-protein >TCONS_00042382-protein ID=TCONS_00042382-protein|Name=TCONS_00042382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MSCAYKIPREVTKSKFCHVHENEKNGETITQLDMRPFTRQFAKNLDNVVV
DEDSCKKEENVDRFHSRTAGMFYLFRPCGIRLSHYEMYTSESLSSVFLYL
IDTFGETAQNLSGIVYDRSCGLHPFIQRLSNEGNLIAKKYEALDFIVDIF
HVEKHTQPKCMLPHVDCLYHPFLDRFGRVRGLNTEVAEQSNSQLNRFKYM
TRKMSYCKRLLFFKFIDDTHNKICLAKSKHKS Run BLAST on NCBI transcript from alignment at sc0003384:6838..8088 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042382 ID=TCONS_00042382|Name=TCONS_00042382|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at sc0003384:6838..8088 (Clytia hemisphaerica)
ttgatttatGCTTGGATTTTGCCAAACAAATTTTGTTATGAGTGTCatca
ataaatttaaaaaataacaaccTTTTGCAGTAGCTCATTTTTCGAGTCAT
ATACTTAAAACGATTAAGTTGACTGTTAGACTGTTCAGCTACTTCGGTGT
TAAGTCCTCGCACGCGACCAAATCTGTCTAAAAATGGATGATAAAGACAA
TCAACATGTGGAAGCATACATTTTGGCTGAGTATGTTTCTCGACATGAAA
TATATCCACGATGAAATCTAGCGCCTCGTATTTTTTTGCAATTAGATTCC
CCTCGTTACTCAACCGTTGTATGAAAGGATGCAATCCACACGAACGATCG
TACACAATTCCAGATAAATTTTGAGCTGTTTCTCCAAACGTGTCAATAAG
ATACAAGAATACTGAAGATAACGACTCTGAAGTGTACATTTCATAGTGTG
ATAAACGTATACCACAGGGTCTGAATAAATAAAACATTCCTGCTGTCCTC
GAATGAAAACGATCGACATTCTCCTCTTTCTTACAGCTATCTTCATCGAC
AACTacattgtctaaatttttagCAAATTGTCTGGTGAACGGTCTCATGT
CCAGTTGCGTTATTGTTTCaccgtttttttcattttcatgtacaTGACAG
AACTTTGATTTGGTTACCTCTCTGGGGATTTTGTATGCACAACTCATATG
AGTTCACCTCTCCACCGCAACCTAAAACACGCGTTTTGGGTGCATCACAT
ATCAGTCGATGCAGTTTTTCGTTGCCATCGATTAcaataaatctttcttt
gcAGCCAGGCTCTGTACATATATGTCTCAGCCACTTTGAATCCGCTTCCG
ATTTGATTTCTTCATAGACCATTCCACACAGTGCTTCAACATCTAATTCC
TTTGATACTTTCTTTCTCGGCCAATATAAAGTTATCTGGTATTCAATAAT
ACGATAAATATACCACGCTGTTTCCAACCTATCAGGATTAATCCTGTCCA
TTATATGTCCAGTTGTACTGATTATATCAGCAGCTTTCTCAAATGACACT
CCGCCGATGCAGATCATATTGTCTGTCATTTCTAACAAttttctggtgaa
tgcaatgccAGAATTGAACAACAATACCTCACAGTTGCTGAAATCGAAAG
TCTTTTGACAAAGTTTCTTATTTTCTGTAAATCCATAGTAATGGGTATTG
GAGCATTTCGCACACTTTGAATGATACGAATGGGCTTTATGCTCTCCATC
A Coding sequence (CDS) from alignment at sc0003384:6838..8088 >TCONS_00042382 ID=TCONS_00042382|Name=TCONS_00042382|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0003384:6838..8088 (Clytia hemisphaerica)
tgatttatGCTTGGATTTTGCCAAACAAATTTTGTTATGAGTGTCatcaa
taaatttaaaaaataacaaccTTTTGCAGTAGCTCATTTTTCGAGTCATA
TACTTAAAACGATTAAGTTGACTGTTAGACTGTTCAGCTACTTCGGTGTT
AAGTCCTCGCACGCGACCAAATCTGTCTAAAAATGGATGATAAAGACAAT
CAACATGTGGAAGCATACATTTTGGCTGAGTATGTTTCTCGACATGAAAT
ATATCCACGATGAAATCTAGCGCCTCGTATTTTTTTGCAATTAGATTCCC
CTCGTTACTCAACCGTTGTATGAAAGGATGCAATCCACACGAACGATCGT
ACACAATTCCAGATAAATTTTGAGCTGTTTCTCCAAACGTGTCAATAAGA
TACAAGAATACTGAAGATAACGACTCTGAAGTGTACATTTCATAGTGTGA
TAAACGTATACCACAGGGTCTGAATAAATAAAACATTCCTGCTGTCCTCG
AATGAAAACGATCGACATTCTCCTCTTTCTTACAGCTATCTTCATCGACA
ACTacattgtctaaatttttagCAAATTGTCTGGTGAACGGTCTCATGTC
CAGTTGCGTTATTGTTTCaccgtttttttcattttcatgtacaTGACAGA
ACTTTGATTTGGTTACCTCTCTGGGGATTTTGTATGCACAACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042382-exon-sc0003384-1491911889:6838..8088 | TCONS_00042382-exon-sc0003384-1491911889:6838..8088 | Clytia hemisphaerica | exon |
| TCONS_00042382-exon-sc0003384-1510915933:6838..8088 | TCONS_00042382-exon-sc0003384-1510915933:6838..8088 | Clytia hemisphaerica | exon |
| TCONS_00042382-exon-sc0003384-1575043694:6838..8088 | TCONS_00042382-exon-sc0003384-1575043694:6838..8088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003384 | supercontig | sc0003384:6838..8088 . |
Blast
The following BLAST results are available for this feature:
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