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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042381 ID=TCONS_00042381|Name=TCONS_00042381|organism=Clytia hemisphaerica|type=transcript|length=978bp
GTTAAATGTGGTccaaacaagttaaaaacagtcTGACAGTTATAAACAAC
TCAGAGCTTAAAAACtacgttcaaattttagaacaaCTGAAGTAAATGTC
AACAATAAAGAATAATTTCAACGCCAAGAAATTCCATTACAAAACCAACA
ATACAGTAAtctattgtttttttgtgtCTCTAGCCATCAATAATTGGAGC
ATCGCCTGATTTTGTCTTTGCTGCTGATCTAACAATTTTTGCAAGTTTTC
TTCACGTTTCGCAGCAATCTCAAGTTCTTTCTCCTTCAATGTTTTATCTA
TATTCATTTTCTCTCTCATAAAACACAAGGTATCATCTCCTGATCTTCTT
GTTCGTTTCGTTTTTGAATTGGATTCCGTTGCTGGTTCATCGCCTTTTCT
TTTGGTCGTCTCTGAGTGAGTCTCCATGCATTGCCTTCGCATTTCAGTTG
CAGTTTCGCGTTCTTTTTCTGCTGCCTGATTATTCTCTTCACGTTCTTTT
AGTATTAAAAGCTCAATTTCTTCGAATTTTGATACAATGTCTTCCATTGC
AACCTCAAATTCTGTTAGTTCTTCTGGAGCTATTCCAGTTGCTTTTTCCT
CATCTGCTTTTTTGcgcttgaaatttttttccatcaATCCATATCGTTCT
CGTACAGCACGGTGATTAACTGTAAACTTTGGGTCATCTGAAGTATTTAA
AGTCTCTGCAATCAACTTCCACGACTCACCTCGTTGTGTGGTGCCACTCT
TGTGATTATAAGGTTCATATGTATATATTTCTCGTACCAGAGTCTCCTCG
TGTTGGTGAGTCCAGATCATGGGAGacctaagaataaaaaaaaactagta
AGAATACCAGAAAACAAAGacaccaaaatcaaaaaaagttgtttttggga
CCAAGctgattttgttttgttttgatcttcAGTTCTCTCGtttcaaaaag
ggcaaaacaaaacaaaaaacaagaaaag Run BLAST on NCBI protein sequence of TCONS_00042381-protein >TCONS_00042381-protein ID=TCONS_00042381-protein|Name=TCONS_00042381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MIWTHQHEETLVREIYTYEPYNHKSGTTQRGESWKLIAETLNTSDDPKFT
VNHRAVRERYGLMEKNFKRKKADEEKATGIAPEELTEFEVAMEDIVSKFE
EIELLILKEREENNQAAEKERETATEMRRQCMETHSETTKRKGDEPATES
NSKTKRTRRSGDDTLCFMREKMNIDKTLKEKELEIAAKREENLQKLLDQQ
QRQNQAMLQLLMARDTKKQ Run BLAST on NCBI transcript from alignment at sc0003384:4528..5505 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042381 ID=TCONS_00042381|Name=TCONS_00042381|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at sc0003384:4528..5505 (Clytia hemisphaerica)
cttttcttgttttttgttttgttttgccctttttgaaaCGAGAGAACTga
agatcaaaacaaaacaaaatcagCTTGGtcccaaaaacaactttttttga
ttttggtgtCTTTGTTTTCTGGTATTCTtactagtttttttttattctta
ggtCTCCCATGATCTGGACTCACCAACACGAGGAGACTCTGGTACGAGAA
ATATATACATATGAACCTTATAATCACAAGAGTGGCACCACACAACGAGG
TGAGTCGTGGAAGTTGATTGCAGAGACTTTAAATACTTCAGATGACCCAA
AGTTTACAGTTAATCACCGTGCTGTACGAGAACGATATGGATtgatggaa
aaaaatttcaagcgCAAAAAAGCAGATGAGGAAAAAGCAACTGGAATAGC
TCCAGAAGAACTAACAGAATTTGAGGTTGCAATGGAAGACATTGTATCAA
AATTCGAAGAAATTGAGCTTTTAATACTAAAAGAACGTGAAGAGAATAAT
CAGGCAGCAGAAAAAGAACGCGAAACTGCAACTGAAATGCGAAGGCAATG
CATGGAGACTCACTCAGAGACGACCAAAAGAAAAGGCGATGAACCAGCAA
CGGAATCCAATTCAAAAACGAAACGAACAAGAAGATCAGGAGATGATACC
TTGTGTTTTATGAGAGAGAAAATGAATATAGATAAAACATTGAAGGAGAA
AGAACTTGAGATTGCTGCGAAACGTGAAGAAAACTTGCAAAAATTGTTAG
ATCAGCAGCAAAGACAAAATCAGGCGATGCTCCAATTATTGATGGCTAGA
GacacaaaaaaacaatagaTTACTGTATTGTTGGTTTTGTAATGGAATTT
CTTGGCGTTGAAATTATTCTTTATTGTTGACATTTACTTCAGttgttcta
aaatttgaacgtaGTTTTTAAGCTCTGAGTTGTTTATAACTGTCAgactg
tttttaacttgtttggACCACATTTAAC Coding sequence (CDS) from alignment at sc0003384:4528..5505 >TCONS_00042381 ID=TCONS_00042381|Name=TCONS_00042381|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0003384:4528..5505 (Clytia hemisphaerica)
ATGATCTGGACTCACCAACACGAGGAGACTCTGGTACGAGAAATATATAC
ATATGAACCTTATAATCACAAGAGTGGCACCACACAACGAGGTGAGTCGT
GGAAGTTGATTGCAGAGACTTTAAATACTTCAGATGACCCAAAGTTTACA
GTTAATCACCGTGCTGTACGAGAACGATATGGATtgatggaaaaaaattt
caagcgCAAAAAAGCAGATGAGGAAAAAGCAACTGGAATAGCTCCAGAAG
AACTAACAGAATTTGAGGTTGCAATGGAAGACATTGTATCAAAATTCGAA
GAAATTGAGCTTTTAATACTAAAAGAACGTGAAGAGAATAATCAGGCAGC
AGAAAAAGAACGCGAAACTGCAACTGAAATGCGAAGGCAATGCATGGAGA
CTCACTCAGAGACGACCAAAAGAAAAGGCGATGAACCAGCAACGGAATCC
AATTCAAAAACGAAACGAACAAGAAGATCAGGAGATGATACCTTGTGTTT
TATGAGAGAGAAAATGAATATAGATAAAACATTGAAGGAGAAAGAACTTG
AGATTGCTGCGAAACGTGAAGAAAACTTGCAAAAATTGTTAGATCAGCAG
CAAAGACAAAATCAGGCGATGCTCCAATTATTGATGGCTAGAGacacaaa
aaaacaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042381-exon-sc0003384-1491911889:4528..5505 | TCONS_00042381-exon-sc0003384-1491911889:4528..5505 | Clytia hemisphaerica | exon |
| TCONS_00042381-exon-sc0003384-1510915933:4528..5505 | TCONS_00042381-exon-sc0003384-1510915933:4528..5505 | Clytia hemisphaerica | exon |
| TCONS_00042381-exon-sc0003384-1575043694:4528..5505 | TCONS_00042381-exon-sc0003384-1575043694:4528..5505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003384 | supercontig | sc0003384:4528..5505 . |
Blast
The following BLAST results are available for this feature:
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