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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042373 ID=TCONS_00042373|Name=TCONS_00042373|organism=Clytia hemisphaerica|type=transcript|length=485bp
caaaaatactcattttattaaaaaaattgtcagccactttgaaaatgtca
caaaacaggcctttatttttgaacacgATCAGGAACTGTAGGGatttcgt
tcttttttggtGCGCGATGAAACTTTTAAAGTatgattataaaaataatt
atatctTGTATCCATTAGATTGATGTTCTCAATGTTGATGACTTTAAGAG
TGACGAATCCAAAAAGATTTGGAGAAAGTTTTGTGAATCATTCAAAGGAA
AAGTCGAGAATTACAACTTTGGATCACTATTGAGAATCGACTGTAATAAA
GATTTTTCAGAAGATAATACGTTATTAGTGACACGTATTCAATTTTACGC
CATCGAACTTGCACGAAATAAACGAGGCTTGAATAAATTCTTTACAAGAA
ATGCAAATAAAAACCAAGaggaaaaactgctgactcagcaaatgAACGAG
CtgaaaactgaagaagaaagtTGCAGGTAGCAAAN Run BLAST on NCBI transcript from alignment at sc0003376:12..2544+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042373 ID=TCONS_00042373|Name=TCONS_00042373|organism=Clytia hemisphaerica|type=transcript|length=2533bp|location=Sequence derived from alignment at sc0003376:12..2544+ (Clytia hemisphaerica)
caaaaatactcattttattaaaaaaattgtcagccactttgaaaatgtca
caaaacaggcctttatttttgaacacgATCAGGAACTGTAGGGatttcgt
tcttttttggtGCGCGATGAAACTTTTAAAGTatgattataaaaataatt
atatctTGTATCCATTAGATTGATGTTCTCAATGTTGATGACTTTAAGAG
TGACGAATCCAAAAAGGTACATGACTTGCTTTTGAATTAAATAATTCTCT
GAAGAAGAAGAGACTCGTTgaagaaataattattttaaaaactaaAGAAA
CATTAATCAAATTTATGGCATCCTTCTTTCCTAGTACTCGTTTGTGTTAA
AAATTATGCGTAAGTGCGTTAAGTGTACCTAAGTGCGTTTATCAGGTAGG
CTCACTTAATATAAACTCCATTTTAAGTACCCACTCTACAAGgtaaaata
agagaaaaaagttCGGCGTAGTTAAACACGATAGAAAAATTCCCctgttt
taaaattcaataaTAATTGAATAGTGTTNGCGAAAGAAAAATTCCCctgt
tttaaaattcaataaTAATTGAATAGTGTTTACACCCATAGTCTTTGATG
ATCGTTTCGAATTGTCAAAATTTATGATACCTGTGTTTAAGTGGAAGGCA
CCTACCGTTTGAGTAAAGGTCTTATCTGATATATTCCCTTACTCTCTTAA
TCGAGTAGTAATGTAATTTTACGAGTGTCTTTTCAGATTTGGAGAAAGTT
TTGTGAATCATTCAAAGGAAAAGTCGAGAATTACAACTTTGGATCACTAT
TGAGGTAATATTTCATAATGGTTTTACATTTCAATATTCTCAAAAAATAT
ACATTCAAGTAGTTGGAGATTGGAAATGATTTAGGACTCAAGCTAACCGT
AGATTTCCATAAAAATCTAATGGTTTTTTAGTCTGATAGAATTAGCTCAA
AAATGGCCtaatcttcaaaataataaatttgGCAAAAGCTTTTGTTTGGA
TCCTAGAGAACCGCCAGAAGAAGCAAAGCCAATTCGAAAATTTTTAGATC
CATTTCGGGGCATTTACAAAACGCCCTTCTAAAAATTCGTTTCGCCGACT
TAATTACATAGTCACGCCCATCAATACACTGGGCTTACAAAGAATTCGCA
GGCCTATAATCTATAATTCCCTGgacttaatttttcattcgccagcttat
caaaaacaagcaaaacccCTGATTTTGGGGATCTATTGTATAATGTTGCG
AAATGACCATGCATCCGCTATTTTCCTTGTGACGTCACCAACTGGCCAGT
GAGATTTACATTTTCAAACCAGGCTTTTACTAATTTAAAATTTAAGGCTC
AAAGGGCTTTGATGGCTATAATTTTACCGAGTCAGCATCTTTCATCAAAA
CTTGTTATCTAGCCATTGAAACCTTATGAACGATGCCATTTTTAATTATA
ACGTTTCAGCCtagtttgaaaaaatagatcttGGCATCTGATGACGTCAC
CTGTAAGGATGGTGGTTTCTGGCACTTTCAGGGGTCAATTATTGACAAAC
CTTTTTTAAGGACACTTTTCCATGATCTTCAGAAAAAgggttaaaattta
tttttgaaaaccttttttttaaattttgtttaccAGGGTTTGTACTGGAA
ATTGACGTctcaaaagatatttcaaaaaagggTTCAAATTTTTCAAGTGA
ACTATAGGCTTTAGTTCTATAAAAGGGAcctttgtgcaaagtttcagcca
gagatttttatttcaatgtaaaaaaaacaTGATTATACTAGACAATTTTT
TCTCGCGGCAGATAAGGCCATAATTTCGAGcccattttttgtgattttta
tgtcaagaaatgaaataaaaataagtgtAAAAGGATCTATTTGTTGTGGA
GGTCTCCACAaatcttttttgtgaaaattcggTTCATTTCTTCCTGTGAT
TAGCTTAACAAAATTATTAAATAATACTGGATTTTTTAAGATCTGCAGTT
CATCTGTAAATGATGAATTTATGGCACCTGTTGTAAAATGCACTGATGAT
TGTGATTGGACTTTCACACTATTTCGTTATAGAATCGACTGTAATAAAGA
TTTTTCAGAAGATAATACGTTATTAGGTAAGCAGGTTTCATTTCAGCGGT
TCATTTTAAGTTCTACCCCGGAGAAAAATATACACAAATTGTTCAATTTG
AAgctgatttttttaattatttacatattcataaaaaaagttgatcaaat
tgaNGATTTGTAgctgatttttttaattatttacatattcataaaaaaag
ttgattaaATTGATGGATATAGATGGTTTGatttttaagttgttttttac
ataattttcctttttcatatTACCAGTGACACGTATTCAATTTTACGCCA
TCGAACTTGCACGAAATAAACGAGGCTTGAATAAATTCTTTACAAGAAAT
GCAAATAAAAACCAAGaggaaaaactgctgactcagcaaatgAACGAGCt
gaaaactgaagaagaaagtTGCAGGTAGCAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042373-exon-sc0003376-1491911889:12..227 | TCONS_00042373-exon-sc0003376-1491911889:12..227 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1510915933:12..227 | TCONS_00042373-exon-sc0003376-1510915933:12..227 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1575043694:12..227 | TCONS_00042373-exon-sc0003376-1575043694:12..227 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1491911889:748..815 | TCONS_00042373-exon-sc0003376-1491911889:748..815 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1510915933:748..815 | TCONS_00042373-exon-sc0003376-1510915933:748..815 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1575043694:748..815 | TCONS_00042373-exon-sc0003376-1575043694:748..815 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1491911889:2094..2137 | TCONS_00042373-exon-sc0003376-1491911889:2094..2137 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1510915933:2094..2137 | TCONS_00042373-exon-sc0003376-1510915933:2094..2137 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1575043694:2094..2137 | TCONS_00042373-exon-sc0003376-1575043694:2094..2137 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1491911889:2388..2544 | TCONS_00042373-exon-sc0003376-1491911889:2388..2544 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1510915933:2388..2544 | TCONS_00042373-exon-sc0003376-1510915933:2388..2544 | Clytia hemisphaerica | exon |
| TCONS_00042373-exon-sc0003376-1575043694:2388..2544 | TCONS_00042373-exon-sc0003376-1575043694:2388..2544 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003376 | supercontig | sc0003376:12..2544 + |
Blast
BLAST of TCONS_00042373 vs. Swiss-Prot (Human)
Match: PBDC1 (Protein PBDC1 OS=Homo sapiens GN=PBDC1 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 9.995e-23 Identity = 37/72 (51.39%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 172 DVLNVDDFKSDESKKIWRKFCESFKGKVENYNFGSLLRIDCNKDFSEDNTLLVTRIQFYAIELARNKRGLNK 387
DVL+ ++ KS+ +K+ WR FC F G VE++N+G+LLR+DC++ ++E+NT+ RIQF+AIE+ARN+ G NK
Sbjct: 85 DVLDPEELKSESAKEKWRPFCLKFNGIVEDFNYGTLLRLDCSQGYTEENTIFAPRIQFFAIEIARNREGYNK 156
The following BLAST results are available for this feature:
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