TCONS_00042339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042339
Unique NameTCONS_00042339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042339 ID=TCONS_00042339|Name=TCONS_00042339|organism=Clytia hemisphaerica|type=transcript|length=551bp
GAAGACTCAAAATAGTGCAGCTATATATAAATTTGAAACACCAGTGTAAC
TATCATTCATCATTCATTCTTGCCGTCCGAAGTATTTCCATGTGAATGTT
TACCACAAAGCCAAGAGGATTTATATATATTTTGCCAAGAGGGGTCTTTC
TTGGCACATTTGTCCTGTAGCCATAATTTGCATTCGTCGCAATCGACCCA
GGCAGTGCTTTTCGCCCAACCAGCTGGAGCAACTTCTTTACAAATTGCAC
ATTTGATTTCTACTTTcctggattttttcttttttgtttccaaCGACGAG
TTACTTGCTGAAGATTATTTCTGTATTTCTCTTTCTTAACCAATTCGAGC
GAGCCCAGTGCATAAGGGTGGTCTTGCCCCTTAAGAATACCGGGATCGTC
AATCGCTACTTCCTCTTGGATGGATGTATCATTGATTAAAGATAATTTGT
TCTATGACGTTGTTGGTGCTAGCATTGTTGGAGCACTGGTGACCGTGTTA
GTTGACGAAGCAGTCGATACGTTGGAAGGTGTGACAGTCGATACGTTGGA
T
Run BLAST on NCBI

transcript from alignment at sc0003349:2529..3079

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042339 ID=TCONS_00042339|Name=TCONS_00042339|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0003349:2529..3079 (Clytia hemisphaerica)
ATCCAACGTATCGACTGTCACACCTTCCAACGTATCGACTGCTTCGTCAA
CTAACACGGTCACCAGTGCTCCAACAATGCTAGCACCAACAACGTCATAG
AACAAATTATCTTTAATCAATGATACATCCATCCAAGAGGAAGTAGCGAT
TGACGATCCCGGTATTCTTAAGGGGCAAGACCACCCTTATGCACTGGGCT
CGCTCGAATTGGTTAAGAAAGAGAAATACAGAAATAATCTTCAGCAAGTA
ACTCGTCGttggaaacaaaaaagaaaaaatccaggAAAGTAGAAATCAAA
TGTGCAATTTGTAAAGAAGTTGCTCCAGCTGGTTGGGCGAAAAGCACTGC
CTGGGTCGATTGCGACGAATGCAAATTATGGCTACAGGACAAATGTGCCA
AGAAAGACCCCTCTTGGCAAAATATATATAAATCCTCTTGGCTTTGTGGT
AAACATTCACATGGAAATACTTCGGACGGCAAGAATGAATGATGAATGAT
AGTTACACTGGTGTTTCAAATTTATATATAGCTGCACTATTTTGAGTCTT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026185XLOC_026185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042339-exon-sc0003349-1491911889:2529..3079TCONS_00042339-exon-sc0003349-1491911889:2529..3079Clytia hemisphaericaexon
TCONS_00042339-exon-sc0003349-1510915933:2529..3079TCONS_00042339-exon-sc0003349-1510915933:2529..3079Clytia hemisphaericaexon
TCONS_00042339-exon-sc0003349-1575043694:2529..3079TCONS_00042339-exon-sc0003349-1575043694:2529..3079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003349supercontigsc0003349:2529..3079 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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