TCONS_00042336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042336
Unique NameTCONS_00042336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1097

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042336 ID=TCONS_00042336|Name=TCONS_00042336|organism=Clytia hemisphaerica|type=transcript|length=1097bp
CCATTACATTATTGATAAACTCAGATCCCGACTTACTACAAGGAAGCGTA
AGACGTTCCATATAAAAGCTAAGCGCTAGGACAATGGACGTTGGTTGTTG
GGTCGGTGAAAGAGTAAAGCTTTTAACATTACTGAAGTAGTTGAACTAAA
ATTTAAAGAAACATTGAACTGTTAATAACTGGGATTTATCAGAATTGGTA
ATAATTAATATTGGACTCTGTACCTTAATTGGAATTAGACAATTCGCANG
TAATAATTAATATTGGACTCTGTACCTTAATTGGAATTAGACAATTCGCA
GTGACTCTGGTTTGTTCGTAAGCGACAACTATTATtatcttgaaaaatat
aaagaataTCTTATGATAACTCACGTGTACTGACTACTATTCTTAGAACC
CCAGCTTTCCGGAGTCGCAGATTCAAATCCAGAATCGGCGTAATAACAAT
ATATAGAAATATGCAACACTCCCCACCACCGAATGAGTTTAAAGATACCG
AAGGAATAAAGTAACAAAACTAAGTTTCTAATATAAATTATATGTACCGT
AAAAACCGAAATATATAAGGACTGTATAATAAACtactcaaaatttttaa
tttcttctttgGCGTTTTGTACGAATTTGACGCCTTGAAAATCAATCTCT
TGTTTCTCGTCTTTGGCACTTTCAATAATTACAAGTTTGTTAATGGGCCG
ACGCAAAGGGCCATTAGTTGTCTTTACGACTGTTGCAcgaatttgatttt
ctttaccACTAATAGTTTCTTCGACACGACCCATTTTCCAAGTATTTCTA
GAGCCTGTGTCTTCGATCAAACAAACGTCACCAATTTTGATACTGGTATC
AATACCACGCTTGCTTTTAACATAGTCCCGTTCTCGCAAGCTGGTTATAT
ATTCGACTTTCCATTGTTGCCAGAAGAagttaaaatacattttaaattGT
CACATGTTAATACGTCAGCGTTGTCGTTGCTGTCCATATTTACGTTTGTT
GTTTCGATCTTACGCCCGTAAATGAGATGGTTGGGCGTTAATGGTGGATG
TCCAACTTCAGAATCGTAAACGACATGATGAACAGACAAATCTCAAT
Run BLAST on NCBI

transcript from alignment at sc0003348:1..4191+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042336 ID=TCONS_00042336|Name=TCONS_00042336|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at sc0003348:1..4191+ (Clytia hemisphaerica)
CCATTACATTATTGATAAACTCAGATCCCGACTTACTACAAGGAAGCGTA
AGACGTTCCATATAAAAGCTAAGCGCTAGGACAATGGACGTTGGTTGTTG
GGTCGGTGAAAGAGTAAAGCTTTTAACATTACTGAAGTAGTTGAACTAAA
ATTTAAAGAAACATTGAACTGTTAATAACTGGGATTTATCAGAATTGGTA
ATAATTAATATTGGACTCTGTACCTTAATTGGAATTAGACAATTCGCANG
TAATAATTAATATTGGACTCTGTACCTTAATTGGAATTAGACAATTCGCA
GTGACTCTGGTTTGTTCGTAAGCGACAACTATTATtatcttgaaaaatat
aaagaataTCTTATGATAACTCACGTGTACTGACTACTATTCTTAGAACC
CCAGCTTTCCGGAGTCGCAGATTCAAATCCAGAATCGGCGTAATAACAAT
ATATAGAAATATGCAACACTCCCCACCACCGAATGAGTTTAAAGATACCG
AAGGAATAAAGTAACAAAACTAAGTTTCTAATATAAATTATATGTACCGT
AAAAACCGAAATATATAAGGACTGTATAATAAACtactcaaaatttttaa
tttcttctttgGCGTTTTGTACGAATTTGACGCCTTGAAAATCAATCTCT
TGTTTCTCGTCTTTGGCACTTTCAATAATTACAAGTTTGTTAATGGGCCG
ACGCAAAGGGCCATTAGTTGTCTTTACGACTGTTGCAcgaatttgatttt
ctttaccACTAATAGTTTCTTCGACACGACCCATTTTCCAAGTATTTCTA
GAGCCTGTGTCTTCGATCAAACAAACGTCACCAATTTTGATACTGGTATC
AATACCACGCTTGCTTTTAACATAGTCCCGTTCTCGCAAGCTGGTTATAT
ATTCGACTTTCCATTGTTGCCAGAAGAagttaaaatacattttaaattGT
CACATGTTAATACGTCAGCGTTGTCGTTGCTGTCCATATTTACGTTTGTT
GTTTCGATCTTACGCCCGTAAATGAGATGGTTGGGCGTTAATGGTGGATG
TCCAACTTCAGAATCGTAAACGTAAGTCAACAGTTTGTTgttcagaatgt
tttcaattcTCTTCAATAACGTTAACAGTTCGTTATAAGTTAGTATCTCT
TTTCGTAGAAACTTCTTCAAAATTCGTTTCGTGGATTGAATCATCCCACA
AACATACCACCCTGCCAGGGGGCGGCTTCGATGTtgtatatagaagactt
ttaaacaggtatagccgatttcataaGCTTACTCGAGATAtctcatgcgc
aagttccacttttcaccacattttggtctaaaattagactagcaagcgtc
tgtctttccttggacacaggaacgcggggacagtgcttataataaagagt
tcttataaaaaatagaaattgccgtgGTAGAAGAGTGGTTTTGGAAAGAC
AGTTGTATTATAATATAGGTATATAATTATATTAATATATAAGTCTATTG
AAAgttgtattcagtgaacatatagacATGTATCCCATTGCATGTTTAAT
Ctacagcgaaatacaacgacgtggtttactagtctagtctaaaattgacc
ataaattgCATTTTCTGCGTGAATTATGAAATGAATAAATTATGGTAAGC
ttgaaatgattgaaaattgccgaaatctgtgaaattaaaTAAATGTGAAA
TATTGTTCGTTTTGGTGCTGATGTTGGGGATGTACCATGCAATATGAGGT
CTAACTTAAGCGCCTAAGACCATAAGGATGACGGCCTGTCGAAGGATTGT
AAGGAGGACAGTCATATGAGCgtggactgtaaggaggacagcctTTACTC
CTAACATTTTGAGCGTGAACTGTAAGGAGGACAGTCAAATAAGCGTGTac
tgtaaggaggacagcctTTACACCTAACATGTATGTGCATGTAGATACTA
TATAAGCTAGCCACTAGGTAGGAGTATGAGGTTCCGAAGGGATCCACACC
AATGGAGAGCATATTGTGTGATACATCCCAAAAGAAGACAAAAAAGACTA
GTCCCTGGACTAAAAACACCTTTTGGGGAAAAAACCTGGCTGGGACTAGC
TGCNGGGTTCCGAAGGGACCCACACCAATGGAGAGCATATTGTGTGATAC
ATCCCAAAAGAAGACAAAAAAGACTAGTCCCTGGACTAAAAACACCTTTT
GGGGAAAAAACCTGGCTGGGACTAGCTGCGATGCGGCTACTTGTGCGTCC
TCGACATCGGACGTGGGCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGAAGGGTGTATTGCAGGCATTAATTTGTTTTCCTTAAAATTAACATAAG
CTAACTAAAGTTAGCTCTAATTTGTCAATAATAACAAAACATGGCTCCCC
TACTAGATATTGTATATACTTTCTACTGTAGTATAATTTGCACACCTCTA
TATGAAAAACTATTTCGTTAGAGGGTGAACAGAAGCTCAACTTTACGGCT
GTTCATTCCAACTTTCATACTTGAATAGATTGAATTTTCTAAGAATCATT
CATTCATTATAAAGAGCttgattcaaaaaattaaacttcCTTGCTTGTAT
TGAAGttattttcgcaattttgaTTTAGTTAAAGAGATCTGGAGAGGGGC
TTGGGTTGGTGAAATTCACTtcttttaaccaaaaaaaattggcaaaaaga
TCCTTGTTTTCTCCTGAATTTAATAAACATTTTGTAAGTATAGTACAGCG
GGCCCACGACACCGGGGGCCATGGAAAAATATGTAGAATGCAAAGCATAA
TGTGGGCCTGATATAGGGACAGatacttgcttataaaaaacatgtatcta
tCCTCTTTCCCACAGGACATGATGAACAGACAAATCTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026182XLOC_026182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042336-exon-sc0003348-1491911889:1..1071TCONS_00042336-exon-sc0003348-1491911889:1..1071Clytia hemisphaericaexon
TCONS_00042336-exon-sc0003348-1510915933:1..1071TCONS_00042336-exon-sc0003348-1510915933:1..1071Clytia hemisphaericaexon
TCONS_00042336-exon-sc0003348-1575043694:1..1071TCONS_00042336-exon-sc0003348-1575043694:1..1071Clytia hemisphaericaexon
TCONS_00042336-exon-sc0003348-1491911889:4166..4191TCONS_00042336-exon-sc0003348-1491911889:4166..4191Clytia hemisphaericaexon
TCONS_00042336-exon-sc0003348-1510915933:4166..4191TCONS_00042336-exon-sc0003348-1510915933:4166..4191Clytia hemisphaericaexon
TCONS_00042336-exon-sc0003348-1575043694:4166..4191TCONS_00042336-exon-sc0003348-1575043694:4166..4191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003348supercontigsc0003348:1..4191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27834	1.01071	0.295926	0.424153	0.740134	0.748064	1.29421	1.77179	1.21279	0.637752	1.36574	1.26525	1.70494	1.85287	2.56732	2.52628	1.82502	1.86082	1.72051	1.88487	2.33258	1.99685	1.08371	1.74569	1.39624	1.53368	1.46809	1.0096	0.750581	0.645772
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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