TCONS_00042335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042335
Unique NameTCONS_00042335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042335 ID=TCONS_00042335|Name=TCONS_00042335|organism=Clytia hemisphaerica|type=transcript|length=808bp
CCTAGGTTATCGAGATTAAGAGTAACGAGCATAAGGCTAAACAAAATGTT
CTGAGAATTCCAAGATACGTGGAGGCAAAGTAGTAATGAGAAGTTTGAGC
CTCATGCTTAAGTCATGAGTAGTAATTAATAATATTGACGTTCTAGGCAA
ACGAAAATGGtgtaaagttaaatcaaaagttaaattaaaagttaaaaatt
taattaaattaaattttaaaataaaccaGTATTGTGCTAAAAAGATTAAT
AAACTAACTAGAAATAAAGAGACatagctaaagtaaaaatatttttggta
ggtaggcaagtgacgtcaaaacaAAATTGCTTCAAAGATGATTAAGTGAG
TAGAGTGCAAAGATATAAGAATTGGATAAAATAGGTTAGGGCAGGGCAAT
CCGATGATTAAGTAAAGTGATAAAGAGGCCTGACGTCtggatttgattta
aaaaactaATAATCTAATTCTTTAGAAAATAACGAGAAGTTGCATCTTTA
AATTCATTCCTATCTTCCATATTCAAAATGTTAGCTGGCAATTTATTCCA
CCAGTTAATAGATGCTGGGATAAATGAGTCCTGGTACGCAATTACACGTC
CATGTATTGGTTGGTATTTATTACTATCCCGAACTAGTTTGGGTAAAATA
CCAGGCATAACAAGTCTCCCTCCCCTTATATCATGTAAAAGAACGACTGA
ATCGACTTTTCGATGATGTTCTAGAGGTTTCCAGCTCAAGTCCTTCATCA
TTCTAGTGGGACTAGCCTCCCACCTCCAATCAGAATAAACAAACCGGGCC
CCTTTTCG
Run BLAST on NCBI

transcript from alignment at sc0003346:10893..11700

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042335 ID=TCONS_00042335|Name=TCONS_00042335|organism=Clytia hemisphaerica|type=transcript|length=808bp|location=Sequence derived from alignment at sc0003346:10893..11700 (Clytia hemisphaerica)
CGAAAAGGGGCCCGGTTTGTTTATTCTGATTGGAGGTGGGAGGCTAGTCC
CACTAGAATGATGAAGGACTTGAGCTGGAAACCTCTAGAACATCATCGAA
AAGTCGATTCAGTCGTTCTTTTACATGATATAAGGGGAGGGAGACTTGTT
ATGCCTGGTATTTTACCCAAACTAGTTCGGGATAGTAATAAATACCAACC
AATACATGGACGTGTAATTGCGTACCAGGACTCATTTATCCCAGCATCTA
TTAACTGGTGGAATAAATTGCCAGCTAACATTTTGAATATGGAAGATAGG
AATGAATTTAAAGATGCAACTTCTCGTTATTTTCTAAAGAATTAGATTAT
tagttttttaaatcaaatccaGACGTCAGGCCTCTTTATCACTTTACTTA
ATCATCGGATTGCCCTGCCCTAACCTATTTTATCCAATTCTTATATCTTT
GCACTCTACTCACTTAATCATCTTTGAAGCAATTTtgttttgacgtcact
tgcctacctaccaaaaatatttttactttagctatGTCTCTTTATTTCTA
GTTAGTTTATTAATCTTTTTAGCACAATACtggtttattttaaaatttaa
tttaattaaatttttaacttttaatttaacttttgatttaactttacaCC
ATTTTCGTTTGCCTAGAACGTCAATATTATTAATTACTACTCATGACTTA
AGCATGAGGCTCAAACTTCTCATTACTACTTTGCCTCCACGTATCTTGGA
ATTCTCAGAACATTTTGTTTAGCCTTATGCTCGTTACTCTTAATCTCGAT
AACCTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026181XLOC_026181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042335-exon-sc0003346-1491911889:10893..11700TCONS_00042335-exon-sc0003346-1491911889:10893..11700Clytia hemisphaericaexon
TCONS_00042335-exon-sc0003346-1510915933:10893..11700TCONS_00042335-exon-sc0003346-1510915933:10893..11700Clytia hemisphaericaexon
TCONS_00042335-exon-sc0003346-1575043694:10893..11700TCONS_00042335-exon-sc0003346-1575043694:10893..11700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003346supercontigsc0003346:10893..11700 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42148	1.27065	1.94478	1.04974	2.23643	1.38856	1.67524	1.7822	0.698748	1.48373	1.20012	1.8145	1.14234	0.572709	1.10985	0.433105	0.711399	0.592444	0.566649	0.724725	0.629918	0.921756	0.40746	0.18522	1.58977	1.49925	0.487282	0.780061	0.52591	0.468842
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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