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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042334 ID=TCONS_00042334|Name=TCONS_00042334|organism=Clytia hemisphaerica|type=transcript|length=1649bp
TAGATAATAGGTTGTGAAAAATCCTTTGATTATCCAGGATTATCTCCCTT
TTGCAGAGATCAAAGTTTTTCATATTTCACAAAAACTTTCCAACTGTGAA
ATAAGGTTATTCATCTGAAGCCCTTTGTCATTGTTTATTGCTTTGTCCTA
TAAAACATCCAATGCAGCTGAATGCAGTTTAATGTTAGATCTCacatctt
ttcaaattttttgacaataaatgtttttaattttggcgtTAGTGACATTT
TTAGTGGCTCAAAAGAAGGACCATATAATATAAAATGCATTCtaattggt
gaaaatttgattaGCTGTCAGCAAGAAGGGTTAAGCAATCATTAGAAGAG
ACCGTCTTTTTTACAATTGGCACTCTTTTGTTAATTATCATTTTGCTAAC
ACTTTTTAGAATAAAAGTAGATTTTGAAATGTATTTTagattcaaaaaaa
gaagaaagtacaCATTTTCAGCACTAGTCCATTATCCCAACTTTGTACCC
CCTGAAATGTGAGATAGGGGTAGTTGAGATAGAGAGATTCCACTGTATAT
AGCACAGTATTTTTACcaaaatgttttatttcaaaggtccttttttgttt
ttattcacaTACTTGCACTATTGTCTTTTGAACGAACTCATAagcaaaat
tttataatttagaTTCAAGTTTTGTTTAACTTTTAAAAGTTACATCTTTT
TAATTTCCATTACAGACTTTTTAGAAAGAAACTATACAACACCAATAGCT
TAAGGAAATAACGCTTTTTATTTGAGATTCATTTAGAAAACTAATGTGAG
ACAAGATTTACTTTATATTTCAATCCCAAACATGGCGGCGGCTGCGCCAA
ATGGTTATTTACAGCAGGCTCCAATAGAGCTAGCAGGTGAATTTATCGCA
GCTGTCATGCGTAAAGATTATCATGATGCTCTTGTATTATGTCAAGCTTT
GTTGATGTTGGAACCAAACAACGAGACTTATATCCAGTTTGCAAGTGCAT
TAAAAGAAGCACAAGAAATAGATTCTGATAGCAGTGATGAAGGCAGCACC
TTAAGTAGCGATAATGATGAAGGTGAAGTTGAGTTGACTGATTCTTCAGA
CAGCGGTCACGATATTTCCAGTAGTGATGATTATTTGTCAGGAGACACAT
CAACTGATGACAGTTCTTCCTCTGAAGATGAAAGTGACtctgaagatgaa
aataataataatgatgatgatgatttgcTGTTTAAAGATGTTGCAGGGTT
GAATTTGCTGGTGGGCGGACTGTCCATTCATAATAAGTATTGAACTGAAA
TAATTTTGTCTTGATGAATTCTTTAACACAAAATCTTATTAGTAGGGGGC
CAATTcctgcctatggcgtcactattttggtcataaaaagttttcccggg
cctaatccgcgtcctccctctcaaaaatatcttgtaatatactgttcttt
ggaatagactaaaaatggctaggttgtagaaaagatgtcacgggacccaa
ggcttggccccctactatatgTGAcataattctgaaaatatcttcaaatt
ggTATATAGCAGTCACAGGGCTAATCGAGCAATAACATCTGATAGGCTGT
TCATAGTAATTATTTatgtaaaatgttaaaaacagtGTAAATATCTCAT Run BLAST on NCBI protein sequence of TCONS_00042334-protein >TCONS_00042334-protein ID=TCONS_00042334-protein|Name=TCONS_00042334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MAAAAPNGYLQQAPIELAGEFIAAVMRKDYHDALVLCQALLMLEPNNETY
IQFASALKEAQEIDSDSSDEGSTLSSDNDEGEVELTDSSDSGHDISSSDD
YLSGDTSTDDSSSSEDESDSEDENNNNDDDDLLFKDVAGLNLLVGGLSIH
NKY Run BLAST on NCBI transcript from alignment at sc0003346:5673..7321 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042334 ID=TCONS_00042334|Name=TCONS_00042334|organism=Clytia hemisphaerica|type=transcript|length=1649bp|location=Sequence derived from alignment at sc0003346:5673..7321 (Clytia hemisphaerica)
ATGAGATATTTACactgtttttaacattttacatAAATAATTACTATGAA
CAGCCTATCAGATGTTATTGCTCGATTAGCCCTGTGACTGCTATATAcca
atttgaagatattttcagaattatgTCAcatatagtagggggccaagcct
tgggtcccgtgacatcttttctacaacctagccatttttagtctattcca
aagaacagtatattacaagatatttttgagagggaggacgcggattaggc
ccgggaaaactttttatgaccaaaatagtgacgccataggcaggAATTGG
CCCCCTACTAATAAGATTTTGTGTTAAAGAATTCATCAAGACAAAATTAT
TTCAGTTCAATACTTATTATGAATGGACAGTCCGCCCACCAGCAAATTCA
ACCCTGCAACATCTTTAAACAgcaaatcatcatcatcattattattattt
tcatcttcagaGTCACTTTCATCTTCAGAGGAAGAACTGTCATCAGTTGA
TGTGTCTCCTGACAAATAATCATCACTACTGGAAATATCGTGACCGCTGT
CTGAAGAATCAGTCAACTCAACTTCACCTTCATCATTATCGCTACTTAAG
GTGCTGCCTTCATCACTGCTATCAGAATCTATTTCTTGTGCTTCTTTTAA
TGCACTTGCAAACTGGATATAAGTCTCGTTGTTTGGTTCCAACATCAACA
AAGCTTGACATAATACAAGAGCATCATGATAATCTTTACGCATGACAGCT
GCGATAAATTCACCTGCTAGCTCTATTGGAGCCTGCTGTAAATAACCATT
TGGCGCAGCCGCCGCCATGTTTGGGATTGAAATATAAAGTAAATCTTGTC
TCACATTAGTTTTCTAAATGAATCTCAAATAAAAAGCGTTATTTCCTTAA
GCTATTGGTGTTGTATAGTTTCTTTCTAAAAAGTCTGTAATGGAAATTAA
AAAGATGTAACTTTTAAAAGTTAAACAAAACTTGAAtctaaattataaaa
ttttgctTATGAGTTCGTTCAAAAGACAATAGTGCAAGTAtgtgaataaa
aacaaaaaaggacctttgaaataaaacattttgGTAAAAATACTGTGCTA
TATACAGTGGAATCTCTCTATCTCAACTACCCCTATCTCACATTTCAGGG
GGTACAAAGTTGGGATAATGGACTAGTGCTGAAAATGtgtactttcttct
ttttttgaatctAAAATACATTTCAAAATCTACTTTTATTCTAAAAAGTG
TTAGCAAAATGATAATTAACAAAAGAGTGCCAATTGTAAAAAAGACGGTC
TCTTCTAATGATTGCTTAACCCTTCTTGCTGACAGCtaatcaaattttca
ccaattaGAATGCATTTTATATTATATGGTCCTTCTTTTGAGCCACTAAA
AATGTCACTAacgccaaaattaaaaacatttattgtcaaaaaatttgaaa
agatgtGAGATCTAACATTAAACTGCATTCAGCTGCATTGGATGTTTTAT
AGGACAAAGCAATAAACAATGACAAAGGGCTTCAGATGAATAACCTTATT
TCACAGTTGGAAAGTTTTTGTGAAATATGAAAAACTTTGATCTCTGCAAA
AGGGAGATAATCCTGGATAATCAAAGGATTTTTCACAACCTATTATCTA Coding sequence (CDS) from alignment at sc0003346:5673..7321 >TCONS_00042334 ID=TCONS_00042334|Name=TCONS_00042334|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0003346:5673..7321 (Clytia hemisphaerica)
TCAATACTTATTATGAATGGACAGTCCGCCCACCAGCAAATTCAACCCTG
CAACATCTTTAAACAgcaaatcatcatcatcattattattattttcatct
tcagaGTCACTTTCATCTTCAGAGGAAGAACTGTCATCAGTTGATGTGTC
TCCTGACAAATAATCATCACTACTGGAAATATCGTGACCGCTGTCTGAAG
AATCAGTCAACTCAACTTCACCTTCATCATTATCGCTACTTAAGGTGCTG
CCTTCATCACTGCTATCAGAATCTATTTCTTGTGCTTCTTTTAATGCACT
TGCAAACTGGATATAAGTCTCGTTGTTTGGTTCCAACATCAACAAAGCTT
GACATAATACAAGAGCATCATGATAATCTTTACGCATGACAGCTGCGATA
AATTCACCTGCTAGCTCTATTGGAGCCTGCTGTAAATAACCATTTGGCGC
AGCCGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042334-exon-sc0003346-1491911889:5673..7321 | TCONS_00042334-exon-sc0003346-1491911889:5673..7321 | Clytia hemisphaerica | exon |
| TCONS_00042334-exon-sc0003346-1510915933:5673..7321 | TCONS_00042334-exon-sc0003346-1510915933:5673..7321 | Clytia hemisphaerica | exon |
| TCONS_00042334-exon-sc0003346-1575043694:5673..7321 | TCONS_00042334-exon-sc0003346-1575043694:5673..7321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003346 | supercontig | sc0003346:5673..7321 . |
Blast
The following BLAST results are available for this feature:
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