TCONS_00042332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042332
Unique NameTCONS_00042332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042332 ID=TCONS_00042332|Name=TCONS_00042332|organism=Clytia hemisphaerica|type=transcript|length=412bp
ATATTCAacatattttatttaatttgaaacgTAAACGAGAAAGGATTCTC
TTGCATACACTACTTCAAGCTTGGCTTAGACCTTCCCTAGCTCttgattc
aattttttctcaCTCGTGTCAACTTTAGGCGATTCCTTGTTTTAAGACGG
CTGGTGTAgttatattgatgctcctgacAAGTTTTccacttcctattttt
tactgagttaagtcgtctagcatgctagactactcTGAGGAAAGGTCAGT
CCTGTTACGGATTGGCCCCGTATTAGAAAACTATCCTTTCCCCAAGGTGA
TTCGGCTAGACGTCGCCATAGTACGTTTCTCCTAAACTCATTGCCTTGTG
TAGATTTTGAGATTCTCTCTATCATATTTTCATATATaagcaaaagattt
ttttaactgTAC
Run BLAST on NCBI

transcript from alignment at sc0003345:12140..12551

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042332 ID=TCONS_00042332|Name=TCONS_00042332|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0003345:12140..12551 (Clytia hemisphaerica)
GTAcagttaaaaaaatcttttgcttATATATGAAAATATGATAGAGAGAA
TCTCAAAATCTACACAAGGCAATGAGTTTAGGAGAAACGTACTATGGCGA
CGTCTAGCCGAATCACCTTGGGGAAAGGATAGTTTTCTAATACGGGGCCA
ATCCGTAACAGGACTGACCTTTCCTCAgagtagtctagcatgctagacga
cttaactcagtaaaaaataggaagtggAAAACTTgtcaggagcatcaata
taacTACACCAGCCGTCTTAAAACAAGGAATCGCCTAAAGTTGACACGAG
tgagaaaaaattgaatcaaGAGCTAGGGAAGGTCTAAGCCAAGCTTGAAG
TAGTGTATGCAAGAGAATCCTTTCTCGTTTAcgtttcaaattaaataaaa
tatgtTGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026178XLOC_026178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042332-exon-sc0003345-1491911889:12140..12551TCONS_00042332-exon-sc0003345-1491911889:12140..12551Clytia hemisphaericaexon
TCONS_00042332-exon-sc0003345-1510915933:12140..12551TCONS_00042332-exon-sc0003345-1510915933:12140..12551Clytia hemisphaericaexon
TCONS_00042332-exon-sc0003345-1575043694:12140..12551TCONS_00042332-exon-sc0003345-1575043694:12140..12551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003345supercontigsc0003345:12140..12551 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185288	0	0	0	1.66677	1.80609	2.25681	2.33891	0.96219	1.33311	0.70825	0.643882	0	1.34769	0.369326	0.217464	0.131614	0.271838	0	0.198407	0.170506	0	0	0.0337319	0.37528	0.337396	0.243254	0.265562	0.565328	0.203887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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