TCONS_00042329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042329
Unique NameTCONS_00042329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042329 ID=TCONS_00042329|Name=TCONS_00042329|organism=Clytia hemisphaerica|type=transcript|length=1377bp
TTAGAgatcttaaaatgaaaaaaacaactttaaatCCCAATTAAATCAGG
AGAAAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAGT
TATATTATGGATTCTGAAACTATTCAAGaTTGAATTGGTTGGAAACTTCG
ATTGAACATTTTGGTTTATGCCAGGGAGtcttttttccatttaaataaat
ttcaaattatcgTTAGCGCTATTACTGTGCTCATCTTGTATACTGTATTA
AAAGAATATTATTAAGCTCTTCAGAATGAAGCAATCAGCCAATCAATACT
TCTCTCGAAATGCTTGGAGGCTGCCTCTTTGGATATGCTCtatcaaaaaa
taataagtgacAGCATCACTGATCTCCAATCTCAGACCCCTCCACTTATA
CTATGTGAAAGGAAATTGCTGACTTTATCTAGTCATGTTGGGTGTACGGA
TGGTATTCTGTATGCAATGCCTTTGATAGCAGAAATTAATGGTGAAAGAC
ATTTATACATTAGGTGTTTTGAGTCGGGTGTGTACAAAGGCTACTTTGAT
CAAACTGAAATGTTTGGTGAACTCATGGATCAGTATGAAATCACCAAGAA
GTTTGTCATCAGGATATACACAGAGTGGGATGTTCTTGCTGTTTATCACA
CTGAACGAAACAAACATAAAAAGgGGACTAAGCATTCAACAACATTTAAA
AGGCTCACAACACTCGATAAACATTCAATCGATAAAACCATTAAATCAGC
ACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCACCtggttttgtat
tttattgccGTAGAGACATGTCTCATACAAATCGAAATACTGATCCCAAA
GATAACCAATTTTACTTGATTGAGGGTCTTGGTGCATCCGAACTCTGGTT
TAGAAACTTTCAAGATTATGGAACCGAACATCCAAACGACCCATATCCAA
CCGTTCTTGAACAGTTCAaaggaaaagaagaactttCACTGATCGAGCAA
TTCCAAGTTTTATCCCATGTCCCGAATCTTCATTCTTGGGCTTCTGAATC
AAAAAGTGGAACGAAAAAACAAcaatattttgcttcaaatgGTTACTCCC
CTCGAGATATCATCTTACGTGCTCTAGATGACATTCATTCTGACATGGAA
GAAAAAGTCTCATCTATAACACCTATCTACTCGCTGATTTTATCCAAACA
ATACCATGTCCCGAAAGTGTCTATCCACAAACAAAATaaaCGGCGTACTT
GCAATCAAACTCACCGGCGAAAAGTATTGGACAAGACGGCTTTGCTAGAG
CATCTTGACCACCCTAATTTTGTTCAACCTGTATATGAAAAGTTGGATGT
TTACCCAAATTTTCGATACAATATTTT
Run BLAST on NCBI

transcript from alignment at sc0003345:4593..7116-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042329 ID=TCONS_00042329|Name=TCONS_00042329|organism=Clytia hemisphaerica|type=transcript|length=2524bp|location=Sequence derived from alignment at sc0003345:4593..7116- (Clytia hemisphaerica)
TTAGAGATCTTAAAATGAAAAAAACAACTTTAAATCCCAATTAAATCAGG
AGAAAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAGT
TATATTATGGATTCTGAAACTATTCAAGGTACAATCTTTTTTTATTTTAT
TTTCAATACGAAAAATATTAATATATCACACAGAATAGAATTATATGTTA
TAAGGAACAAAACTGAACCAATACATGTGACTAATGACATAACAATTGAC
ATACATAAACCTCTCAATTTTTTTACAGATTGAATTGGTTGGAAACTTCG
ATTGAACATTTTGGTTTATGCCAGGGAGTCTTTTTTCCATTTAAATAAAT
TTCAAATTATCGTTAGCGCTATTACTGTGCTCATCTTGTATACTGTATTA
AAAGAATATTATTAAGGTTTGATTCAATTATGGCGTTAACTGTGACAAAC
AAATGAGAACATGACAAATACATATACCAAATAAAAACATAGACCAAATC
TTATTTTTGTTTAAAAGAGACAATGTGACAGAAACAGAACACCTTTCAAT
AATAAGAATTATGTTTGTACTTGTGTTGTTTCTTTTTAAAAATTGATTTA
GAAAATGGTGATTTTTGAAATTTCTGTTAATTTTTAGTATCACAGCCCAT
CAACTCACATATATTTATGTTATTTTGTATTTATGTTATATAATCTTCAT
TTTCATTCCAGCTCTTCAGAATGAAGCAATCAGCCAATCAATACTTCTCT
CGAAATGCTTGGAGGCTGCCTCTTTGGATATGCTCTATCAAAAAATAATA
AGTGACAGCATCACTGATCTCCAATCTCAGACCCCTCCACTTATACTATG
TGAAAGGAAATTGCTGACTTTATCTAGTCATGTTGGGTGTACGGATGGTA
TTCTGTATGCAATGCCTTTGATAGCAGAAATTAATGGTGAAAGACATTTA
TACATTAGGTAAAGAATTTGGCTTCTACTTTAAGTGTTCGCTCTAGGAAT
TATTTCAATCTCTCTTTTCCCATGACACTTTGTATCAACAACTGCTTAAA
ATCGAAATGTTTTATTTTTTAAACTTATTGATTTTATTTGTTTGCATTAA
ATTTCAGGTGTTTTGAGTCGGGTGTGTACAAAGGCTACTTTGATCAAACT
GAAATGTTTGGTGAACTCATGGATCAGTATGAAATCACCAAGAAGTTTGT
CATCAGGATATACACAGAGTGGGATGTTCTTGCTGTTTATCACACTGAAC
GAAACAAACATAAAAAGGGTAAATAATTTTGAAATTTAGTCTTTTTTACC
AATAGTTGTATTTTTGTTATTACTGAACTGAATTTTTGAAATTGTTGCCC
AAACTATATTCTATTATATACTTTTTTATTCAGGGACTAAGCATTCAACA
ACATTTAAAAGGCTCACAACACTCGATAAACATTCAATCGATAAAACCAT
TAAATCAGCACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCACCTG
GTTTTGTATTTTATTGCCGTAGAGACATGTCTCATACAAATCGAAATACT
GATCCCAAAGATAACCAGTAAGATAATACTTTTCTTTGGTTCTCTACTGT
CTTTTCTATTTGAAGAGAGTATTTTTAGAAACTAAGATTATGTACAAATT
CGCCTCTGTGAAATATTCCACTTTTACATTACAGCTGTTCTTCGAACTCG
AACTCGGAAATCTAATTTGTTGAATTACAGAGAGTTTTTTAAGAGACCTA
GAAAATTCAATAGTATCAGGGATAGAAAGAATTAGGGAAAGTCTAGTTCG
CTAAAAGAAATTTTATTTTATTTCTTATTTTTCACAGATTTTACTTGATT
GAGGGTCTTGGTGCATCCGAACTCTGGTTTAGAAACTTTCAAGATTATGG
AACCGAACATCCAAACGACCCATATCCAACCGTTCTTGAACAGTTCAAAG
GAAAAGAAGAACTTTCACTGATCGAGCAATTCCAAGTTTTATCCCATGTC
CCGAATCTTCATTCTTGGGCTTCTGAATCAAAAAGTGGAACGAAAAAACA
ACAATATTTTGCTTCAAATGGTTACTCCCCTCGAGATATCATCTTACGTG
CTCTAGATGACATTCATTCTGACATGGAAGAAAAAGTCTCATCTATAACA
CCTATCTACTCGCTGATTTTATCCAAACAATACCATGTCCCGAAAGTGTC
TATCCACAAACAAAATGTAAGTGTTAAACTTTTCACGTTATATGATTGAT
AAGATCCATTCATTTTCTAGTCTTCGGAAGACAAATCATAAAAATTTATA
TAATTACTACAAATAAGAAATGAAATTATGATGATTTTTTCCGATAAATT
ATTAATCTCGATATCCTAAATATTTTAAATTTAGAAACGGCGTACTTGCA
ATCAAACTCACCGGCGAAAAGTATTGGACAAGACGGCTTTGCTAGAGCAT
CTTGACCACCCTAATTTTGTTCAACCTGTATATGAAAAGTTGGATGTTTA
CCCAAATTTTCGATACAATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026176XLOC_026176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042329-exon-sc0003345-1575043694:6989..7116TCONS_00042329-exon-sc0003345-1575043694:6989..7116Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1575043694:6701..6838TCONS_00042329-exon-sc0003345-1575043694:6701..6838Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1575043694:6159..6405TCONS_00042329-exon-sc0003345-1575043694:6159..6405Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1575043694:5849..6009TCONS_00042329-exon-sc0003345-1575043694:5849..6009Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1575043694:5550..5733TCONS_00042329-exon-sc0003345-1575043694:5550..5733Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1575043694:4901..5279TCONS_00042329-exon-sc0003345-1575043694:4901..5279Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1575043694:4593..4732TCONS_00042329-exon-sc0003345-1575043694:4593..4732Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1510915933:6989..7116TCONS_00042329-exon-sc0003345-1510915933:6989..7116Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1510915933:6701..6838TCONS_00042329-exon-sc0003345-1510915933:6701..6838Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1510915933:6159..6405TCONS_00042329-exon-sc0003345-1510915933:6159..6405Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1510915933:5849..6009TCONS_00042329-exon-sc0003345-1510915933:5849..6009Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1510915933:5550..5733TCONS_00042329-exon-sc0003345-1510915933:5550..5733Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1510915933:4901..5279TCONS_00042329-exon-sc0003345-1510915933:4901..5279Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1510915933:4593..4732TCONS_00042329-exon-sc0003345-1510915933:4593..4732Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1491911889:6989..7116TCONS_00042329-exon-sc0003345-1491911889:6989..7116Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1491911889:6701..6838TCONS_00042329-exon-sc0003345-1491911889:6701..6838Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1491911889:6159..6405TCONS_00042329-exon-sc0003345-1491911889:6159..6405Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1491911889:5849..6009TCONS_00042329-exon-sc0003345-1491911889:5849..6009Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1491911889:5550..5733TCONS_00042329-exon-sc0003345-1491911889:5550..5733Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1491911889:4901..5279TCONS_00042329-exon-sc0003345-1491911889:4901..5279Clytia hemisphaericaexon
TCONS_00042329-exon-sc0003345-1491911889:4593..4732TCONS_00042329-exon-sc0003345-1491911889:4593..4732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003345supercontigsc0003345:4593..7116 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.16694	0.0100585	0.0557271	0.0203353	0.0165104	0.00667912	0.01792	0.00131925	0.0571871	0.0203913	0.00313075	3.04434e-09	0.104585	0.0102465	0.342111	0	0.0228074	2.26778e-06	3.88858e-08	2.95336e-07	1.05953e-06	0.131624	0.836287	0	1.15893	4.19088e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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