TCONS_00042325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042325
Unique NameTCONS_00042325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042325 ID=TCONS_00042325|Name=TCONS_00042325|organism=Clytia hemisphaerica|type=transcript|length=1457bp
TTTAGAgatcttaaaatgaaaaaaacaactttaaatCCCAATTAAATCAG
GAGAAAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAG
TTATATTATGGATTCTGAAACTATTCAAGCTCTTCAGAATGAAGCAATCA
GCCAATCAATACTTCTCTCGAAATGCTTGGAGGCTGCCTCTTTGGATATG
CTCtatcaaaaaataataagtgacAGCATCACTGATCTCCAATCTCAGAC
CCCTCCACTTATACTATGTGAAAGGAAATTGCTGACTTTATCTAGTCATG
TTGGGTGTACGGATGGTATTCTGTATGCAATGCCTTTGATAGCAGAAATT
AATGGTGAAAGACATTTATACATTAGGTGTTTTGAGTCGGGTGTGTACAA
AGGCTACTTTGATCAAACTGAAATGTTTGGTGAACTCATGGATCAGTATG
AAATCACCAAGAAGTTTGTCATCAGGATATACACAGAGTGGGATGTTCTT
GCTGTTTATCACACTGAACGAAACAAACATAAAAAGgGGACTAAGCATTC
AACAACATTTAAAAGGCTCACAACACTCGATAAACATTCAATCGATAAAA
CCATTAAATCAGCACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCA
CCtggttttgtattttattgccGTAGAGACATGTCTCATACAAATCGAAA
TACTGATCCCAAAGATAACCAATTTTACTTGATTGAGGGTCTTGGTGCAT
CTGAACTCTGGTTTAGAAACTTTCAAGATTATGGAACCGAACATCCAAAC
GACCCATATCCAACCGTTCTTGAACAGTTCAaaggaaaagaagaactttC
ACTGATCGAGCAATTCCAAGTTTTATCCCATGTCCCGAATCTTCATTCTT
GGGCTTCTGAATCAAAAAGTGGAACGAAAAAACAAcaatattttgcttca
aatgGTTACTCCCCTCGAGATATCATCTTACGTGCTCTAGATGACATTCA
TTCTGACATGGAAGAAAAAGTCTCATCTATAACACCTATCTACTCGCTGA
TTTTATCCAAACAATACCATGTCCCGAAAGTGTCTATCCACAAACAAAAT
aaaCGGCGTACTTGCAATCAAACTCACCGGCGAAAAGTATTGGACAAGAC
GGCTTTGCTAGAGCATCTTGACCACCCTAATTTTGTTCAACCTGTGTATG
AAAAGTTGGATGTTTACCCAAATTTTCGATACAATATTTTCAATCACGGG
ACGATCGTTTGGCGTGAACTATCACAAAACCAACATGTTGTGGTTATGAA
TGATTACGACTCCGATAATATTAACGGGAACGTCAAGGTTGGTTTAAACC
ATTAAATGATATACTTTGAAGGCTTAGATAATTTTTttagacgaaaaaaa
aaccgatTCGTAATTTACAATAGTTGTAAGATGGAAAAAGAAGGTGtctt
aaaaaat
Run BLAST on NCBI

transcript from alignment at sc0003345:3486..7117-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042325 ID=TCONS_00042325|Name=TCONS_00042325|organism=Clytia hemisphaerica|type=transcript|length=3632bp|location=Sequence derived from alignment at sc0003345:3486..7117- (Clytia hemisphaerica)
TTTAGAGATCTTAAAATGAAAAAAACAACTTTAAATCCCAATTAAATCAG
GAGAAAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAG
TTATATTATGGATTCTGAAACTATTCAAGGTACAATCTTTTTTTATTTTA
TTTTCAATACGAAAAATATTAATATATCACACAGAATAGAATTATATGTT
ATAAGGAACAAAACTGAACCAATACATGTGACTAATGACATAACAATTGA
CATACATAAACCTCTCAATTTTTTTACAGATTGAATTGGTTGGAAACTTC
GATTGAACATTTTGGTTTATGCCAGGGAGTCTTTTTTCCATTTAAATAAA
TTTCAAATTATCGTTAGCGCTATTACTGTGCTCATCTTGTATACTGTATT
AAAAGAATATTATTAAGGTTTGATTCAATTATGGCGTTAACTGTGACAAA
CAAATGAGAACATGACAAATACATATACCAAATAAAAACATAGACCAAAT
CTTATTTTTGTTTAAAAGAGACAATGTGACAGAAACAGAACACCTTTCAA
TAATAAGAATTATGTTTGTACTTGTGTTGTTTCTTTTTAAAAATTGATTT
AGAAAATGGTGATTTTTGAAATTTCTGTTAATTTTTAGTATCACAGCCCA
TCAACTCACATATATTTATGTTATTTTGTATTTATGTTATATAATCTTCA
TTTTCATTCCAGCTCTTCAGAATGAAGCAATCAGCCAATCAATACTTCTC
TCGAAATGCTTGGAGGCTGCCTCTTTGGATATGCTCTATCAAAAAATAAT
AAGTGACAGCATCACTGATCTCCAATCTCAGACCCCTCCACTTATACTAT
GTGAAAGGAAATTGCTGACTTTATCTAGTCATGTTGGGTGTACGGATGGT
ATTCTGTATGCAATGCCTTTGATAGCAGAAATTAATGGTGAAAGACATTT
ATACATTAGGTAAAGAATTTGGCTTCTACTTTAAGTGTTCGCTCTAGGAA
TTATTTCAATCTCTCTTTTCCCATGACACTTTGTATCAACAACTGCTTAA
AATCGAAATGTTTTATTTTTTAAACTTATTGATTTTATTTGTTTGCATTA
AATTTCAGGTGTTTTGAGTCGGGTGTGTACAAAGGCTACTTTGATCAAAC
TGAAATGTTTGGTGAACTCATGGATCAGTATGAAATCACCAAGAAGTTTG
TCATCAGGATATACACAGAGTGGGATGTTCTTGCTGTTTATCACACTGAA
CGAAACAAACATAAAAAGGGTAAATAATTTTGAAATTTAGTCTTTTTTAC
CAATAGTTGTATTTTTGTTATTACTGAACTGAATTTTTGAAATTGTTGCC
CAAACTATATTCTATTATATACTTTTTTATTCAGGGACTAAGCATTCAAC
AACATTTAAAAGGCTCACAACACTCGATAAACATTCAATCGATAAAACCA
TTAAATCAGCACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCACCT
GGTTTTGTATTTTATTGCCGTAGAGACATGTCTCATACAAATCGAAATAC
TGATCCCAAAGATAACCAGTAAGATAATACTTTTCTTTGGTTCTCTACTG
TCTTTTCTATTTGAAGAGAGTATTTTTAGAAACTAAGATTATGTACAAAT
TCGCCTCTGTGAAATATTCCACTTTTACATTACAGCTGTTCTTCGAACTC
GAACTCGGAAATCTAATTTGTTGAATTACAGAGAGTTTTTTAAGAGACCT
AGAAAATTCAATAGTATCAGGGATAGAAAGAATTAGGGAAAGTCTAGTTC
GCTAAAAGAAATTTTATTTTATTTCTTATTTTTCACAGATTTTACTTGAT
TGAGGGTCTTGGTGCATCCGAACTCTGGTTTAGAAACTTTCAAGATTATG
GAACCGAACATCCAAACGACCCATATCCAACCGTTCTTGAACAGTTCAAA
GGAAAAGAAGAACTTTCACTGATCGAGCAATTCCAAGTTTTATCCCATGT
CCCGAATCTTCATTCTTGGGCTTCTGAATCAAAAAGTGGAACGAAAAAAC
AACAATATTTTGCTTCAAATGGTTACTCCCCTCGAGATATCATCTTACGT
GCTCTAGATGACATTCATTCTGACATGGAAGAAAAAGTCTCATCTATAAC
ACCTATCTACTCGCTGATTTTATCCAAACAATACCATGTCCCGAAAGTGT
CTATCCACAAACAAAATGTAAGTGTTAAACTTTTCACGTTATATGATTGA
TAAGATCCATTCATTTTCTAGTCTTCGGAAGACAAATCATAAAAATTTAT
ATAATTACTACAAATAAGAAATGAAATTATGATGATTTTTTCCGATAAAT
TATTAATCTCGATATCCTAAATATTTTAAATTTAGAAACGGCGTACTTGC
AATCAAACTCACCGGCGAAAAGTATTGGACAAGACGGCTTTGCTAGAGCA
TCTTGACCACCCTAATTTTGTTCAACCTGTATATGAAAAGTTGGATGTTT
ACCCAAATTTTCGATACAATATTTTCAACNATGTACAAATTCGCCTCTGT
GAAATATTCCACTTTTACATTACAGCTGTTCTTCGAACTCGAACTCGGAA
ATCTAATTTGTTGAATTACAGACAGTTTTTTAAGAGACCTAGAAAATTCA
ATAGTATCAGGGATAGAAAGAATTAGTGAAATTCTAGTTCGCTAAAAGAA
ATTTTATTTTATTTCTTATTTTTCACAGATTTTACTTGATTGAGGGTCTT
GGTGCATCTGAACTCTGGTTTAGAAACTTTCAAGATTATGGAACCGAACA
TCCAAACGACCCATATCCAACCGTTCTTGAACAGTTCAAAGGAAAAGAAG
AACTTTCACTGATCGAGCAATTCCAAGTTTTATCCCATGTCCCGAATCTT
CATTCTTGGGCTTCTGAATCAAAAAGTGGAACGAAAAAACAACAATATTT
TGCTTCAAATGGTTACTCCCCTCGAGATATCATCTTACGTGCTCTAGATG
ACATTCATTCTGACATGGAAGAAAAAGTCTCATCTATAACACCTATCTAC
TCGCTGATTTTATCCAAACAATACCATGTCCCGAAAGTGTCTATCCACAA
ACAAAATGTAAGTGTTAAACTTTTCACGTTATATGATTGATAAGATCCAT
TCATTTTCTAGTCTTCGGAAGACAAATCATAAAAATTGATATAATTACTA
CAAATAAGAAATGAAATTATGATGATTTTTTCCGATAAATCATTAATCTC
GATATCCTAAATATTTTAAATTTAGAAACGGCGTACTTGCAATCAAACTC
ACCGGCGAAAAGTATTGGACAAGACGGCTTTGCTAGAGCATCTTGACCAC
CCTAATTTTGTTCAACCTGTGTATGAAAAGTTGGATGTTTACCCAAATTT
TCGATACAATATTTTCAATCACGGGACGATCGTTTGGCGTGAACTATCAC
AAAACCAACATGTTGTGGTTATGAATGATTACGACTCCGATAATATTAAC
GGGAACGTCAAGGTTGGTTTAAACCATTAAATGATATACTTTGAAGGCTT
AGATAATTTTTTTAGACGAAAAAAAAACCGATTCGTAATTTACAATAGTT
GTAAGATGGAAAAAGAAGGTGTCTTAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026176XLOC_026176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042325-exon-sc0003345-1575043694:6989..7117TCONS_00042325-exon-sc0003345-1575043694:6989..7117Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1575043694:6159..6405TCONS_00042325-exon-sc0003345-1575043694:6159..6405Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1575043694:5849..6009TCONS_00042325-exon-sc0003345-1575043694:5849..6009Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1575043694:5550..5733TCONS_00042325-exon-sc0003345-1575043694:5550..5733Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1575043694:4011..4389TCONS_00042325-exon-sc0003345-1575043694:4011..4389Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1575043694:3486..3842TCONS_00042325-exon-sc0003345-1575043694:3486..3842Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1510915933:6989..7117TCONS_00042325-exon-sc0003345-1510915933:6989..7117Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1510915933:6159..6405TCONS_00042325-exon-sc0003345-1510915933:6159..6405Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1510915933:5849..6009TCONS_00042325-exon-sc0003345-1510915933:5849..6009Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1510915933:5550..5733TCONS_00042325-exon-sc0003345-1510915933:5550..5733Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1510915933:4011..4389TCONS_00042325-exon-sc0003345-1510915933:4011..4389Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1510915933:3486..3842TCONS_00042325-exon-sc0003345-1510915933:3486..3842Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1491911889:6989..7117TCONS_00042325-exon-sc0003345-1491911889:6989..7117Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1491911889:6159..6405TCONS_00042325-exon-sc0003345-1491911889:6159..6405Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1491911889:5849..6009TCONS_00042325-exon-sc0003345-1491911889:5849..6009Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1491911889:5550..5733TCONS_00042325-exon-sc0003345-1491911889:5550..5733Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1491911889:4011..4389TCONS_00042325-exon-sc0003345-1491911889:4011..4389Clytia hemisphaericaexon
TCONS_00042325-exon-sc0003345-1491911889:3486..3842TCONS_00042325-exon-sc0003345-1491911889:3486..3842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003345supercontigsc0003345:3486..7117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.19196	1.93714	2.15592	2.88849	3.76394	3.41147	4.76487	3.42934	2.11564	1.65244	0	0	0	0	0	0.177922	0	0	0	0	6.70861	2.5791	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top