TCONS_00042320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042320
Unique NameTCONS_00042320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042320 ID=TCONS_00042320|Name=TCONS_00042320|organism=Clytia hemisphaerica|type=transcript|length=1527bp
GAgatcttaaaatgaaaaaaacaactttaaatCCCAATTAAATCAGGAGA
AAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAGTTAT
ATTATGGATTCTGAAACTATTCAAGTATCACAGCCCATCAACTCACATAT
ATTTATGTTATTTTGTATTTATGTTAtataatcttcattttcattccAGC
TCTTCAGAATGAAGCAATCAGCCAATCAATACTTCTCTCGAAATGCTTGG
AGGCTGCCTCTTTGGATATGCTCtatcaaaaaataataagtgacAGCATC
ACTGATCTCCAATCTCAGACCCCTCCACTTATACTATGTGAAAGGAAATT
GCTGACTTTATCTAGTCATGTTGGGTGTACGGATGGTATTCTGTATGCAA
TGCCTTTGATAGCAGAAATTAATGGTGAAAGACATTTATACATTAGGTGT
TTTGAGTCGGGTGTGTACAAAGGCTACTTTGATCAAACTGAAATGTTTGG
TGAACTCATGGATCAGTATGAAATCACCAAGAAGTTTGTCATCAGGATAT
ACACAGAGTGGGATGTTCTTGCTGTTTATCACACTGAACGAAACAAACAT
AAAAAGgGGACTAAGCATTCAACAACATTTAAAAGGCTCACAACACTCGA
TAAACATTCAATCGATAAAACCATTAAATCAGCACACGACTCTTTAAAGG
AAACATTTAAAAGTTTTGCACCtggttttgtattttattgccGTAGAGAC
ATGTCTCATACAAATCGAAATACTGATCCCAAAGATAACCAATTTTACTT
GATTGAGGGTCTTGGTGCATCTGAACTCTGGTTTAGAAACTTTCAAGATT
ATGGAACCGAACATCCAAACGACCCATATCCAACCGTTCTTGAACAGTTC
AaaggaaaagaagaactttCACTGATCGAGCAATTCCAAGTTTTATCCCA
TGTCCCGAATCTTCATTCTTGGGCTTCTGAATCAAAAAGTGGAACGAAAA
AACAAcaatattttgcttcaaatgGTTACTCCCCTCGAGATATCATCTTA
CGTGCTCTAGATGACATTCATTCTGACATGGAAGAAAAAGTCTCATCTAT
AACACCTATCTACTCGCTGATTTTATCCAAACAATACCATGTCCCGAAAG
TGTCTATCCACAAACAAAATaaaCGGCGTACTTGCAATCAAACTCACCGG
CGAAAAGTATTGGACAAGACGGCTTTGCTAGAGCATCTTGACCACCCTAA
TTTTGTTCAACCTGTGTATGAAAAGTTGGATGTTTACCCAAATTTTCGAT
ACAATATTTTCAATCACGGGACGATCGTTTGGCGTGAACTATCACAAAAC
CAACATGTTGTGGTTATGAATGATTACGACTCCGATAATATTAACGGGAA
CGTCAAGGTTGGTTTAAACCATTAAATGATATACTTTGAAGGCTTAGATA
ATTTTTttagacgaaaaaaaaaccgatTCGTAATTTACAATAGTTGTAAG
ATGGAAAAAGAAGGTGtcttaaaaaat
Run BLAST on NCBI

transcript from alignment at sc0003345:3486..7113-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042320 ID=TCONS_00042320|Name=TCONS_00042320|organism=Clytia hemisphaerica|type=transcript|length=3628bp|location=Sequence derived from alignment at sc0003345:3486..7113- (Clytia hemisphaerica)
GAGATCTTAAAATGAAAAAAACAACTTTAAATCCCAATTAAATCAGGAGA
AAATATCAAATACACAGTTTTGACTGCTCAAGAAATTTATATTCAGTTAT
ATTATGGATTCTGAAACTATTCAAGGTACAATCTTTTTTTATTTTATTTT
CAATACGAAAAATATTAATATATCACACAGAATAGAATTATATGTTATAA
GGAACAAAACTGAACCAATACATGTGACTAATGACATAACAATTGACATA
CATAAACCTCTCAATTTTTTTACAGATTGAATTGGTTGGAAACTTCGATT
GAACATTTTGGTTTATGCCAGGGAGTCTTTTTTCCATTTAAATAAATTTC
AAATTATCGTTAGCGCTATTACTGTGCTCATCTTGTATACTGTATTAAAA
GAATATTATTAAGGTTTGATTCAATTATGGCGTTAACTGTGACAAACAAA
TGAGAACATGACAAATACATATACCAAATAAAAACATAGACCAAATCTTA
TTTTTGTTTAAAAGAGACAATGTGACAGAAACAGAACACCTTTCAATAAT
AAGAATTATGTTTGTACTTGTGTTGTTTCTTTTTAAAAATTGATTTAGAA
AATGGTGATTTTTGAAATTTCTGTTAATTTTTAGTATCACAGCCCATCAA
CTCACATATATTTATGTTATTTTGTATTTATGTTATATAATCTTCATTTT
CATTCCAGCTCTTCAGAATGAAGCAATCAGCCAATCAATACTTCTCTCGA
AATGCTTGGAGGCTGCCTCTTTGGATATGCTCTATCAAAAAATAATAAGT
GACAGCATCACTGATCTCCAATCTCAGACCCCTCCACTTATACTATGTGA
AAGGAAATTGCTGACTTTATCTAGTCATGTTGGGTGTACGGATGGTATTC
TGTATGCAATGCCTTTGATAGCAGAAATTAATGGTGAAAGACATTTATAC
ATTAGGTAAAGAATTTGGCTTCTACTTTAAGTGTTCGCTCTAGGAATTAT
TTCAATCTCTCTTTTCCCATGACACTTTGTATCAACAACTGCTTAAAATC
GAAATGTTTTATTTTTTAAACTTATTGATTTTATTTGTTTGCATTAAATT
TCAGGTGTTTTGAGTCGGGTGTGTACAAAGGCTACTTTGATCAAACTGAA
ATGTTTGGTGAACTCATGGATCAGTATGAAATCACCAAGAAGTTTGTCAT
CAGGATATACACAGAGTGGGATGTTCTTGCTGTTTATCACACTGAACGAA
ACAAACATAAAAAGGGTAAATAATTTTGAAATTTAGTCTTTTTTACCAAT
AGTTGTATTTTTGTTATTACTGAACTGAATTTTTGAAATTGTTGCCCAAA
CTATATTCTATTATATACTTTTTTATTCAGGGACTAAGCATTCAACAACA
TTTAAAAGGCTCACAACACTCGATAAACATTCAATCGATAAAACCATTAA
ATCAGCACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCACCTGGTT
TTGTATTTTATTGCCGTAGAGACATGTCTCATACAAATCGAAATACTGAT
CCCAAAGATAACCAGTAAGATAATACTTTTCTTTGGTTCTCTACTGTCTT
TTCTATTTGAAGAGAGTATTTTTAGAAACTAAGATTATGTACAAATTCGC
CTCTGTGAAATATTCCACTTTTACATTACAGCTGTTCTTCGAACTCGAAC
TCGGAAATCTAATTTGTTGAATTACAGAGAGTTTTTTAAGAGACCTAGAA
AATTCAATAGTATCAGGGATAGAAAGAATTAGGGAAAGTCTAGTTCGCTA
AAAGAAATTTTATTTTATTTCTTATTTTTCACAGATTTTACTTGATTGAG
GGTCTTGGTGCATCCGAACTCTGGTTTAGAAACTTTCAAGATTATGGAAC
CGAACATCCAAACGACCCATATCCAACCGTTCTTGAACAGTTCAAAGGAA
AAGAAGAACTTTCACTGATCGAGCAATTCCAAGTTTTATCCCATGTCCCG
AATCTTCATTCTTGGGCTTCTGAATCAAAAAGTGGAACGAAAAAACAACA
ATATTTTGCTTCAAATGGTTACTCCCCTCGAGATATCATCTTACGTGCTC
TAGATGACATTCATTCTGACATGGAAGAAAAAGTCTCATCTATAACACCT
ATCTACTCGCTGATTTTATCCAAACAATACCATGTCCCGAAAGTGTCTAT
CCACAAACAAAATGTAAGTGTTAAACTTTTCACGTTATATGATTGATAAG
ATCCATTCATTTTCTAGTCTTCGGAAGACAAATCATAAAAATTTATATAA
TTACTACAAATAAGAAATGAAATTATGATGATTTTTTCCGATAAATTATT
AATCTCGATATCCTAAATATTTTAAATTTAGAAACGGCGTACTTGCAATC
AAACTCACCGGCGAAAAGTATTGGACAAGACGGCTTTGCTAGAGCATCTT
GACCACCCTAATTTTGTTCAACCTGTATATGAAAAGTTGGATGTTTACCC
AAATTTTCGATACAATATTTTCAACNATGTACAAATTCGCCTCTGTGAAA
TATTCCACTTTTACATTACAGCTGTTCTTCGAACTCGAACTCGGAAATCT
AATTTGTTGAATTACAGACAGTTTTTTAAGAGACCTAGAAAATTCAATAG
TATCAGGGATAGAAAGAATTAGTGAAATTCTAGTTCGCTAAAAGAAATTT
TATTTTATTTCTTATTTTTCACAGATTTTACTTGATTGAGGGTCTTGGTG
CATCTGAACTCTGGTTTAGAAACTTTCAAGATTATGGAACCGAACATCCA
AACGACCCATATCCAACCGTTCTTGAACAGTTCAAAGGAAAAGAAGAACT
TTCACTGATCGAGCAATTCCAAGTTTTATCCCATGTCCCGAATCTTCATT
CTTGGGCTTCTGAATCAAAAAGTGGAACGAAAAAACAACAATATTTTGCT
TCAAATGGTTACTCCCCTCGAGATATCATCTTACGTGCTCTAGATGACAT
TCATTCTGACATGGAAGAAAAAGTCTCATCTATAACACCTATCTACTCGC
TGATTTTATCCAAACAATACCATGTCCCGAAAGTGTCTATCCACAAACAA
AATGTAAGTGTTAAACTTTTCACGTTATATGATTGATAAGATCCATTCAT
TTTCTAGTCTTCGGAAGACAAATCATAAAAATTGATATAATTACTACAAA
TAAGAAATGAAATTATGATGATTTTTTCCGATAAATCATTAATCTCGATA
TCCTAAATATTTTAAATTTAGAAACGGCGTACTTGCAATCAAACTCACCG
GCGAAAAGTATTGGACAAGACGGCTTTGCTAGAGCATCTTGACCACCCTA
ATTTTGTTCAACCTGTGTATGAAAAGTTGGATGTTTACCCAAATTTTCGA
TACAATATTTTCAATCACGGGACGATCGTTTGGCGTGAACTATCACAAAA
CCAACATGTTGTGGTTATGAATGATTACGACTCCGATAATATTAACGGGA
ACGTCAAGGTTGGTTTAAACCATTAAATGATATACTTTGAAGGCTTAGAT
AATTTTTTTAGACGAAAAAAAAACCGATTCGTAATTTACAATAGTTGTAA
GATGGAAAAAGAAGGTGTCTTAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026176XLOC_026176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042320-exon-sc0003345-1575043694:6989..7113TCONS_00042320-exon-sc0003345-1575043694:6989..7113Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1575043694:6159..6479TCONS_00042320-exon-sc0003345-1575043694:6159..6479Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1575043694:5849..6009TCONS_00042320-exon-sc0003345-1575043694:5849..6009Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1575043694:5550..5733TCONS_00042320-exon-sc0003345-1575043694:5550..5733Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1575043694:4011..4389TCONS_00042320-exon-sc0003345-1575043694:4011..4389Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1575043694:3486..3842TCONS_00042320-exon-sc0003345-1575043694:3486..3842Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1510915933:6989..7113TCONS_00042320-exon-sc0003345-1510915933:6989..7113Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1510915933:6159..6479TCONS_00042320-exon-sc0003345-1510915933:6159..6479Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1510915933:5849..6009TCONS_00042320-exon-sc0003345-1510915933:5849..6009Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1510915933:5550..5733TCONS_00042320-exon-sc0003345-1510915933:5550..5733Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1510915933:4011..4389TCONS_00042320-exon-sc0003345-1510915933:4011..4389Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1510915933:3486..3842TCONS_00042320-exon-sc0003345-1510915933:3486..3842Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1491911889:6989..7113TCONS_00042320-exon-sc0003345-1491911889:6989..7113Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1491911889:6159..6479TCONS_00042320-exon-sc0003345-1491911889:6159..6479Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1491911889:5849..6009TCONS_00042320-exon-sc0003345-1491911889:5849..6009Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1491911889:5550..5733TCONS_00042320-exon-sc0003345-1491911889:5550..5733Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1491911889:4011..4389TCONS_00042320-exon-sc0003345-1491911889:4011..4389Clytia hemisphaericaexon
TCONS_00042320-exon-sc0003345-1491911889:3486..3842TCONS_00042320-exon-sc0003345-1491911889:3486..3842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003345supercontigsc0003345:3486..7113 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.469465	0.432185	2.58803	0.965184	0.00787845	0.106442	2.36038	1.04401	0.953922	2.96146	0	0	0	0	0	0.0664437	0	0	0	0	3.85257	5.31485	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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