TCONS_00042312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042312
Unique NameTCONS_00042312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042312 ID=TCONS_00042312|Name=TCONS_00042312|organism=Clytia hemisphaerica|type=transcript|length=431bp
taatgaGAGAGTCACGAACCATCCAAAAAGCTCTCAAGATGTTTCCCAGC
AAACAACGTGACGcacaattttcaaagacatttgcAAAACTCGTTTTCAT
GGGCAAAATCAACGCTGCTCTGAAAATGCTCGATAAACAAGAAGGAGGTG
GTGTGCTTAACCTATCGAAAGATGTAATCGACAGCTTGAAATCAAAACAC
CCAGACGCACAAGAAGCAGACGAATCCGTTTTGATCCATGGTCCAAAGCC
TTTTGTCGATCCGGTGATGTTCGAAAGTATAGACGAATCTACCATCGTGA
AATCTGCCATTCGAACCAAAGGATCTAGCGGACCATCTGGTTTAGACTCT
GATGCTTGGAGAAGGATGCTGGTTTCAAAgaactttggcaaatttggttC
AGATCTGCAAAAAACGTTGGTGGTATTCGCA
Run BLAST on NCBI

protein sequence of TCONS_00042312-protein

>TCONS_00042312-protein ID=TCONS_00042312-protein|Name=TCONS_00042312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MRESRTIQKALKMFPSKQRDAQFSKTFAKLVFMGKINAALKMLDKQEGGG
VLNLSKDVIDSLKSKHPDAQEADESVLIHGPKPFVDPVMFESIDESTIVK
SAIRTKGSSGPSGLDSDAWRRMLVSKNFGKFGSDLQKTLVVFA
Run BLAST on NCBI

transcript from alignment at sc0003343:4069..4499

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042312 ID=TCONS_00042312|Name=TCONS_00042312|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0003343:4069..4499 (Clytia hemisphaerica)
TGCGAATACCACCAACGTTTTTTGCAGATCTGaaccaaatttgccaaagt
tcTTTGAAACCAGCATCCTTCTCCAAGCATCAGAGTCTAAACCAGATGGT
CCGCTAGATCCTTTGGTTCGAATGGCAGATTTCACGATGGTAGATTCGTC
TATACTTTCGAACATCACCGGATCGACAAAAGGCTTTGGACCATGGATCA
AAACGGATTCGTCTGCTTCTTGTGCGTCTGGGTGTTTTGATTTCAAGCTG
TCGATTACATCTTTCGATAGGTTAAGCACACCACCTCCTTCTTGTTTATC
GAGCATTTTCAGAGCAGCGTTGATTTTGCCCATGAAAACGAGTTTTgcaa
atgtctttgaaaattgtgCGTCACGTTGTTTGCTGGGAAACATCTTGAGA
GCTTTTTGGATGGTTCGTGACTCTCtcatta

Coding sequence (CDS) from alignment at sc0003343:4069..4499

>TCONS_00042312 ID=TCONS_00042312|Name=TCONS_00042312|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0003343:4069..4499 (Clytia hemisphaerica)
TGCGAATACCACCAACGTTTTTTGCAGATCTGaaccaaatttgccaaagt
tcTTTGAAACCAGCATCCTTCTCCAAGCATCAGAGTCTAAACCAGATGGT
CCGCTAGATCCTTTGGTTCGAATGGCAGATTTCACGATGGTAGATTCGTC
TATACTTTCGAACATCACCGGATCGACAAAAGGCTTTGGACCATGGATCA
AAACGGATTCGTCTGCTTCTTGTGCGTCTGGGTGTTTTGATTTCAAGCTG
TCGATTACATCTTTCGATAGGTTAAGCACACCACCTCCTTCTTGTTTATC
GAGCATTTTCAGAGCAGCGTTGATTTTGCCCATGAAAACGAGTTTTgcaa
atgtctttgaaaattgtgCGTCACGTTGTTTGCTGGGAAACATCTTGAGA
GCTTTTTGGATGGTTCGTGACTCTCtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026168XLOC_026168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042312-exon-sc0003343-1491911889:4069..4499TCONS_00042312-exon-sc0003343-1491911889:4069..4499Clytia hemisphaericaexon
TCONS_00042312-exon-sc0003343-1510915933:4069..4499TCONS_00042312-exon-sc0003343-1510915933:4069..4499Clytia hemisphaericaexon
TCONS_00042312-exon-sc0003343-1575043694:4069..4499TCONS_00042312-exon-sc0003343-1575043694:4069..4499Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042312-proteinTCONS_00042312-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003343supercontigsc0003343:4069..4499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.44921	4.74248	3.89192	2.30134	13.2159	11.637	17.2065	18.2732	7.50353	7.96105	8.57689	8.72664	7.4983	9.81105	4.16882	9.64486	6.08058	7.91072	5.95536	6.47366	3.04002	4.00687	2.69495	4.97493	9.95167	12.7099	3.23282	2.90307	2.11011	2.16862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top