TCONS_00042280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042280
Unique NameTCONS_00042280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042280 ID=TCONS_00042280|Name=TCONS_00042280|organism=Clytia hemisphaerica|type=transcript|length=345bp
tAAAACTAGCAGTTAGCTGAAGCTATAAATGCCCCGAAACCGCCGGAGTT
AAACATTTAGTGCCAGCCATTATAATTTGATAAGTAACATTTAGTTACGA
CGATAAAAGCCTTTTAAAACAACATTATGTTCTAGAGTTGAAATTAGATG
TAATGTCCTTTTCTTGGCTGTCATCCTTAAAGTCCGGCAGTAGGACGTGA
CAACTGAGGAGTATATTCTGACTCAACCTCAAGATTACTTTGGAATAATT
AGGTTTGAGAAGAACGCTTCACAATATACGCAATCAGGGTAAACTTAGGT
AGGATTTGTAGgacaaatttttctggaaaataaacatttctttTC
Run BLAST on NCBI

transcript from alignment at sc0003325:8427..8771

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042280 ID=TCONS_00042280|Name=TCONS_00042280|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at sc0003325:8427..8771 (Clytia hemisphaerica)
GAaaagaaatgtttattttccagaaaaatttgtcCTACAAATCCTACCTA
AGTTTACCCTGATTGCGTATATTGTGAAGCGTTCTTCTCAAACCTAATTA
TTCCAAAGTAATCTTGAGGTTGAGTCAGAATATACTCCTCAGTTGTCACG
TCCTACTGCCGGACTTTAAGGATGACAGCCAAGAAAAGGACATTACATCT
AATTTCAACTCTAGAACATAATGTTGTTTTAAAAGGCTTTTATCGTCGTA
ACTAAATGTTACTTATCAAATTATAATGGCTGGCACTAAATGTTTAACTC
CGGCGGTTTCGGGGCATTTATAGCTTCAGCTAACTGCTAGTTTTa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026139XLOC_026139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042280-exon-sc0003325-1491911889:8427..8771TCONS_00042280-exon-sc0003325-1491911889:8427..8771Clytia hemisphaericaexon
TCONS_00042280-exon-sc0003325-1510915933:8427..8771TCONS_00042280-exon-sc0003325-1510915933:8427..8771Clytia hemisphaericaexon
TCONS_00042280-exon-sc0003325-1575043694:8427..8771TCONS_00042280-exon-sc0003325-1575043694:8427..8771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003325supercontigsc0003325:8427..8771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.371798	0.296082	1.21486	0	4.1704	1.82959	3.4257	3.67059	0	0	0.922585	1.35332	0.438049	0.741681	0.906805	1.05319	0.56139	0.555628	2.36583	0.810602	0.842787	3.91488	0.686035	1.51995	0.318174	0.591701	1.63532	0.906695	1.68019	2.97008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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