TCONS_00042271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042271
Unique NameTCONS_00042271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042271 ID=TCONS_00042271|Name=TCONS_00042271|organism=Clytia hemisphaerica|type=transcript|length=411bp
aaattttttgtgaaattcttgTTTAGGAAGGAGAAAATCTAAAAAGCACA
AAGAGAATGTCATGAAATAATACGTTAGCTTTAGAATGCAGTGCTCTTTT
TAGTACTCTTGTTTTCAGTCCTGAATGTCAGGCGTAATGTCTATCCTCCG
TTCAAAAAGTGTTCACTACACTTATACAAACACCTGATAAAGAGAAAAAG
TTGgtcatatttaaaaattggGAATAACgtagattttattattttccttt
aataacaaactttttttattgcCTAGTGCAAAGAATGCATGTTTTTATCA
AGTTTGTTTGCAAACAAGCTAACCAAGCTAATATATTAGCTTAGTTCTtc
taatttaaatttaattctTTCATTGTCCCGAAATCACACCCATTATTCTG
tgtcatttcat
Run BLAST on NCBI

transcript from alignment at sc0003323:2398..2808

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042271 ID=TCONS_00042271|Name=TCONS_00042271|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0003323:2398..2808 (Clytia hemisphaerica)
atgaaatgacaCAGAATAATGGGTGTGATTTCGGGACAATGAAagaatta
aatttaaattagaAGAACTAAGCTAATATATTAGCTTGGTTAGCTTGTTT
GCAAACAAACTTGATAAAAACATGCATTCTTTGCACTAGgcaataaaaaa
agtttgttattaaaggaaaataataaaatctacGTTATTCccaattttta
aatatgacCAACTTTTTCTCTTTATCAGGTGTTTGTATAAGTGTAGTGAA
CACTTTTTGAACGGAGGATAGACATTACGCCTGACATTCAGGACTGAAAA
CAAGAGTACTAAAAAGAGCACTGCATTCTAAAGCTAACGTATTATTTCAT
GACATTCTCTTTGTGCTTTTTAGATTTTCTCCTTCCTAAAcaagaatttc
acaaaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026131XLOC_026131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042271-exon-sc0003323-1491911889:2398..2808TCONS_00042271-exon-sc0003323-1491911889:2398..2808Clytia hemisphaericaexon
TCONS_00042271-exon-sc0003323-1510915933:2398..2808TCONS_00042271-exon-sc0003323-1510915933:2398..2808Clytia hemisphaericaexon
TCONS_00042271-exon-sc0003323-1575043694:2398..2808TCONS_00042271-exon-sc0003323-1575043694:2398..2808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003323supercontigsc0003323:2398..2808 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.70253	0.856346	0	0.194553	0.510664	0.561486	1.38572	0.228166	0.805467	0.634101	0.801714	0	0.608538	2.45656	0	0.121365	0.746511	0.286529	0	0	0.954729	0.248484	0.201377	1.64773	0.240308	0.195527	0.904975	0.257017	0.389877	0.595834
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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