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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042260 ID=TCONS_00042260|Name=TCONS_00042260|organism=Clytia hemisphaerica|type=transcript|length=1245bp
CTAAGCAATCCAggccctgacccgaaaattggagttgcttttacaaaaaa
atgaaatttcttattttatagcCACCCCTGTGATTTTAAAAACTGCATCG
GTTCACTGAGACAGGTGTTTTTTCAATAGATATTCTCAACCGTAGCGCAC
CAGGTATATTTCTTTCATTCAACTTaacttttcttaactttttcagcaac
aactaaaataaaaattatgagaAGTTACAACTATATACTTGTATATATCG
AGACACTCGAACCATCCATTTTTTACTGGCAAGATGTAAAATCTTTATCC
AAGCttaaagaaagtgtcaaaaagAGATTCCTAATCAGCCCTAGTgttca
aaagtttttatttcaatcACAACCAAATAACATTTCGACATTAAATGATG
AGGGTTACAATAAATTGTACGAGAAGCGTTTTAAAGAACCAGTTAATTTG
TTTCTCAGAATTACAGATAAATCATTCAATGTGAATGCAATTCAAGAACG
AAGAGAAGAAAATCTATGGAAACTAAAGACTATTGAGATTGAAACAGGAC
GCTATCTTGGGGACGCTctctttgaaaaactttcaattcaAATTGAAGAT
AGCGTTTTGAAATGGACAGtttgtgatttgaaaaataaaatctgtCAACT
AACAAACGACCCTATAGGGCATGCAGTATTGATCAGCTCTGATGATATTA
TTTTGGCAGATAGTCAATTGATATCAGATGTATATCTTGACTTACCAAAT
GAAACTGGTAAAATTGTGTTTTATCAGAATGTTCCCATCGGTGAAGCTAC
ACGAGGACACAACATACTTTCAAAATTCAACATCACTTTACCAGGAAATG
TCGAAGATTTGTCAGTCGATTATCCTTTGGTACAAATTGGTTTATTTGAA
GTTTCAGAAATGAAATCTTGGATCGAAGCTTTTTATTATATTCCATGCAC
TGAGCAAAGATTGTATTTTCTTCGTGATCGTGGTTTTAATGATACCAGTG
ACTACAGTTTAGTcgagaaagaaaaatttgataagGGTGACGGAGGGCAG
AGACCTATAGAGATCAAGGTTTTTGTTTACAGTGCAttagatgaaaattt
gaaatcaatctaCCAAAAAAACAGTGTTAGAACaattagggagtggtcag
aaagtatctactaggggggagtggaggatattttgaaaaatcccaaaaaa
ctttcgcaccccctcccctagcctggaaaaaaatttcgaaccccc Run BLAST on NCBI protein sequence of TCONS_00042260-protein >TCONS_00042260-protein ID=TCONS_00042260-protein|Name=TCONS_00042260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MRSYNYILVYIETLEPSIFYWQDVKSLSKLKESVKKRFLISPSVQKFLFQ
SQPNNISTLNDEGYNKLYEKRFKEPVNLFLRITDKSFNVNAIQERREENL
WKLKTIEIETGRYLGDALFEKLSIQIEDSVLKWTVCDLKNKICQLTNDPI
GHAVLISSDDIILADSQLISDVYLDLPNETGKIVFYQNVPIGEATRGHNI
LSKFNITLPGNVEDLSVDYPLVQIGLFEVSEMKSWIEAFYYIPCTEQRLY
FLRDRGFNDTSDYSLVEKEKFDKGDGGQRPIEIKVFVYSALDENLKSIYQ
KNSVRTIREWSESIY Run BLAST on NCBI transcript from alignment at sc0003318:873..2117 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042260 ID=TCONS_00042260|Name=TCONS_00042260|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at sc0003318:873..2117 (Clytia hemisphaerica)
gggggttcgaaatttttttccaggctaggggagggggtgcgaaagttttt
tgggatttttcaaaatatcctccactcccccctagtagatactttctgac
cactccctaattGTTCTAACACTGTTTTTTTGGtagattgatttcaaatt
ttcatctaaTGCACTGTAAACAAAAACCTTGATCTCTATAGGTCTCTGCC
CTCCGTCACCcttatcaaatttttctttctcgACTAAACTGTAGTCACTG
GTATCATTAAAACCACGATCACGAAGAAAATACAATCTTTGCTCAGTGCA
TGGAATATAATAAAAAGCTTCGATCCAAGATTTCATTTCTGAAACTTCAA
ATAAACCAATTTGTACCAAAGGATAATCGACTGACAAATCTTCGACATTT
CCTGGTAAAGTGATGTTGAATTTTGAAAGTATGTTGTGTCCTCGTGTAGC
TTCACCGATGGGAACATTCTGATAAAACACAATTTTACCAGTTTCATTTG
GTAAGTCAAGATATACATCTGATATCAATTGACTATCTGCCAAAATAATA
TCATCAGAGCTGATCAATACTGCATGCCCTATAGGGTCGTTTGTTAGTTG
acagattttatttttcaaatcacaaaCTGTCCATTTCAAAACGCTATCTT
CAATTtgaattgaaagtttttcaaagagAGCGTCCCCAAGATAGCGTCCT
GTTTCAATCTCAATAGTCTTTAGTTTCCATAGATTTTCTTCTCTTCGTTC
TTGAATTGCATTCACATTGAATGATTTATCTGTAATTCTGAGAAACAAAT
TAACTGGTTCTTTAAAACGCTTCTCGTACAATTTATTGTAACCCTCATCA
TTTAATGTCGAAATGTTATTTGGTTGTgattgaaataaaaacttttgaac
ACTAGGGCTGATTAGGAATCTctttttgacactttctttaaGCTTGGATA
AAGATTTTACATCTTGCCAGTAAAAAATGGATGGTTCGAGTGTCTCGATA
TATACAAGTATATAGTTGTAACTtctcataatttttattttagttgttgc
tgaaaaagttaagaaaagttAAGTTGAATGAAAGAAATATACCTGGTGCG
CTACGGTTGAGAATATCTATTGAAAAAACACCTGTCTCAGTGAACCGATG
CAGTTTTTAAAATCACAGGGGTGgctataaaataagaaatttcatttttt
tgtaaaagcaactccaattttcgggtcagggccTGGATTGCTTAG Coding sequence (CDS) from alignment at sc0003318:873..2117 >TCONS_00042260 ID=TCONS_00042260|Name=TCONS_00042260|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at sc0003318:873..2117 (Clytia hemisphaerica)
ctagtagatactttctgaccactccctaattGTTCTAACACTGTTTTTTT
GGtagattgatttcaaattttcatctaaTGCACTGTAAACAAAAACCTTG
ATCTCTATAGGTCTCTGCCCTCCGTCACCcttatcaaatttttctttctc
gACTAAACTGTAGTCACTGGTATCATTAAAACCACGATCACGAAGAAAAT
ACAATCTTTGCTCAGTGCATGGAATATAATAAAAAGCTTCGATCCAAGAT
TTCATTTCTGAAACTTCAAATAAACCAATTTGTACCAAAGGATAATCGAC
TGACAAATCTTCGACATTTCCTGGTAAAGTGATGTTGAATTTTGAAAGTA
TGTTGTGTCCTCGTGTAGCTTCACCGATGGGAACATTCTGATAAAACACA
ATTTTACCAGTTTCATTTGGTAAGTCAAGATATACATCTGATATCAATTG
ACTATCTGCCAAAATAATATCATCAGAGCTGATCAATACTGCATGCCCTA
TAGGGTCGTTTGTTAGTTGacagattttatttttcaaatcacaaaCTGTC
CATTTCAAAACGCTATCTTCAATTtgaattgaaagtttttcaaagagAGC
GTCCCCAAGATAGCGTCCTGTTTCAATCTCAATAGTCTTTAGTTTCCATA
GATTTTCTTCTCTTCGTTCTTGAATTGCATTCACATTGAATGATTTATCT
GTAATTCTGAGAAACAAATTAACTGGTTCTTTAAAACGCTTCTCGTACAA
TTTATTGTAACCCTCATCATTTAATGTCGAAATGTTATTTGGTTGTgatt
gaaataaaaacttttgaacACTAGGGCTGATTAGGAATCTctttttgaca
ctttctttaaGCTTGGATAAAGATTTTACATCTTGCCAGTAAAAAATGGA
TGGTTCGAGTGTCTCGATATATACAAGTATATAGTTGTAACTtctcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042260-exon-sc0003318-1491911889:873..2117 | TCONS_00042260-exon-sc0003318-1491911889:873..2117 | Clytia hemisphaerica | exon |
| TCONS_00042260-exon-sc0003318-1510915933:873..2117 | TCONS_00042260-exon-sc0003318-1510915933:873..2117 | Clytia hemisphaerica | exon |
| TCONS_00042260-exon-sc0003318-1575043694:873..2117 | TCONS_00042260-exon-sc0003318-1575043694:873..2117 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003318 | supercontig | sc0003318:873..2117 . |
Blast
The following BLAST results are available for this feature:
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