TCONS_00042248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042248
Unique NameTCONS_00042248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042248 ID=TCONS_00042248|Name=TCONS_00042248|organism=Clytia hemisphaerica|type=transcript|length=235bp
AGATGAAGTCAATGCAGTTGTTAACGAGAACAAGCAAATTTTTGAACCTG
ATGGTCATCTTGTTGATTTAGTACTTCAAAACTATCGCAATAACCTTATG
CATAATCAAGATGCCTTTGCTCAACAAGAAAATTATGAAGTGCAAGACCT
AATGACCAACTCATCAgacagtgaaaatgatgatgaaagtCATGATATCG
AACAAAATTTTGCACCATTTACTCAAACAGTTCAC
Run BLAST on NCBI

transcript from alignment at sc0003306:12584..12818

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042248 ID=TCONS_00042248|Name=TCONS_00042248|organism=Clytia hemisphaerica|type=transcript|length=235bp|location=Sequence derived from alignment at sc0003306:12584..12818 (Clytia hemisphaerica)
GTGAACTGTTTGAGTAAATGGTGCAAAATTTTGTTCGATATCATGacttt
catcatcattttcactgtcTGATGAGTTGGTCATTAGGTCTTGCACTTCA
TAATTTTCTTGTTGAGCAAAGGCATCTTGATTATGCATAAGGTTATTGCG
ATAGTTTTGAAGTACTAAATCAACAAGATGACCATCAGGTTCAAAAATTT
GCTTGTTCTCGTTAACAACTGCATTGACTTCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026108XLOC_026108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042248-exon-sc0003306-1491911889:12584..12818TCONS_00042248-exon-sc0003306-1491911889:12584..12818Clytia hemisphaericaexon
TCONS_00042248-exon-sc0003306-1510915933:12584..12818TCONS_00042248-exon-sc0003306-1510915933:12584..12818Clytia hemisphaericaexon
TCONS_00042248-exon-sc0003306-1575043694:12584..12818TCONS_00042248-exon-sc0003306-1575043694:12584..12818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003306supercontigsc0003306:12584..12818 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	5.10918	0	6.85603	3.20645	4.54167	0	1.24392	5.32883	1.2421	7.90101	4.81419	1.91394	1.33938	1.7193	4.41278	2.48924	2.29199	5.84348	3.7013	8.2381	1.37918	5.19115	2.21846	0	4.48352	5.76286	3.90471	5.3413	5.51097
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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