TCONS_00042238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042238
Unique NameTCONS_00042238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042238 ID=TCONS_00042238|Name=TCONS_00042238|organism=Clytia hemisphaerica|type=transcript|length=634bp
GATTATAAGggaaaatattatttatttcttgagaaaaaacTTTCGTGAAT
GAGTAATCAATGCGATGCTGAAAACCTTAAAACCACTGTGTTACACAGCc
cctgggaccccagcccctctggaaaatttgcacaaaattttgtctccgtt
ggaaaaataccctataatttcagccccactgggaaattgagtctgatttt
atccccacttgAAATTCAACGGAAAAAATTACTCTCCGATGCCATCCCAG
CTGGAACTTTTGGACTGacaaacaatagaatttcaatccccattgggatt
tcgatagaaattttcatcctcaCTGAGAACAAaacttccaccggggctgt
gtgAGACAAGGGTGTACAATGGTGGTCAGAACATGTTGGCATTTCTAGGT
ATTTTAGCGTTTGGAATTTAATGTTCTAGCGAGAatgacattttcaggct
ttctaCTTTATtcaatcggatatttcaatttaggAGGAGTAAATGGTTTC
CAGAATATATTCTCAGCCTTGTCGGACCATTCAaaagcttttggatcctc
atATCCTCAGCTCCTTAATCTCATGTTAAAACACGTAGTATTAACCAAGA
CACTTGATAGGACATTGTACTATAAATCGAATCC
Run BLAST on NCBI

protein sequence of TCONS_00042238-protein

>TCONS_00042238-protein ID=TCONS_00042238-protein|Name=TCONS_00042238-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MSNQCDAENLKTTVLHSPWDPSPSGKFAQNFVSVGKIPYNFSPTGKLSLI
LSPLEIQRKKLLSDAIPAGTFGLTNNRISIPIGISIEIFILTENKTSTGA
V
Run BLAST on NCBI

transcript from alignment at sc0003299:11877..12510

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042238 ID=TCONS_00042238|Name=TCONS_00042238|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0003299:11877..12510 (Clytia hemisphaerica)
GGATTCGATTTATAGTACAATGTCCTATCAAGTGTCTTGGTTAATACTAC
GTGTTTTAACATGAGATTAAGGAGCTGAGGATatgaggatccaaaagctt
tTGAATGGTCCGACAAGGCTGAGAATATATTCTGGAAACCATTTACTCCT
cctaaattgaaatatccgattgaATAAAGtagaaagcctgaaaatgtcat
TCTCGCTAGAACATTAAATTCCAAACGCTAAAATACCTAGAAATGCCAAC
ATGTTCTGACCACCATTGTACACCCTTGTCTcacacagccccggtggaag
ttTTGTTCTCAGtgaggatgaaaatttctatcgaaatcccaatggggatt
gaaattctattgtttgtCAGTCCAAAAGTTCCAGCTGGGATGGCATCGGA
GAGTAATTTTTTCCGTTGAATTTcaagtggggataaaatcagactcaatt
tcccagtggggctgaaattatagggtatttttccaacggagacaaaattt
tgtgcaaattttccagaggggctggggtcccagggGCTGTGTAACACAGT
GGTTTTAAGGTTTTCAGCATCGCATTGATTACTCATTCACGAAAgttttt
tctcaagaaataaataatattttccCTTATAATC

Coding sequence (CDS) from alignment at sc0003299:11877..12510

>TCONS_00042238 ID=TCONS_00042238|Name=TCONS_00042238|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0003299:11877..12510 (Clytia hemisphaerica)
TcacacagccccggtggaagttTTGTTCTCAGtgaggatgaaaatttcta
tcgaaatcccaatggggattgaaattctattgtttgtCAGTCCAAAAGTT
CCAGCTGGGATGGCATCGGAGAGTAATTTTTTCCGTTGAATTTcaagtgg
ggataaaatcagactcaatttcccagtggggctgaaattatagggtattt
ttccaacggagacaaaattttgtgcaaattttccagaggggctggggtcc
cagggGCTGTGTAACACAGTGGTTTTAAGGTTTTCAGCATCGCATTGATT
ACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026098XLOC_026098Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042238-proteinTCONS_00042238-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042238-exon-sc0003299-1491911889:11877..12510TCONS_00042238-exon-sc0003299-1491911889:11877..12510Clytia hemisphaericaexon
TCONS_00042238-exon-sc0003299-1510915933:11877..12510TCONS_00042238-exon-sc0003299-1510915933:11877..12510Clytia hemisphaericaexon
TCONS_00042238-exon-sc0003299-1575043694:11877..12510TCONS_00042238-exon-sc0003299-1575043694:11877..12510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003299supercontigsc0003299:11877..12510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.162807	0.0983562	0.0975359	0.450294	0.177914	1.50252	0.90427	0.562756	0.435665	1.86062	0.333571	0.27759	0.230624	0.047401	0	0	0	0	0	0	0	0	0	0.0896256	0.513839	0	0.244317	0	0.044312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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