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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042236 ID=TCONS_00042236|Name=TCONS_00042236|organism=Clytia hemisphaerica|type=transcript|length=898bp
TGCCAAGAACTTGACCGTTATCGACCATGCTTTTTATATCCACATCAGGT
ATAATCTTCGGTGTGCCAGCAGTGACCTTTGCTAATTCCTGAATGTAGGT
GTAGCTACCCCCAGGCGTTAATTTCGAAGTTAGCATCGTTGACTGTTTGC
TGTGTTACAGCGTGGTTCACTGCATTTGTCATCAAAGAGAGTGGCAATAC
CACTTTTGCCCGCCGACATCCGTAAATACATTCCATGGCATGGGCCATTT
TTGCGATGTCGGTAGTATTAGACACGTCTGTTATGCTACAAAGTTCTTTA
AAAGACTCAACTACAGGTCGGGGGCGCGCATTCACCAAATTAACAATGGA
GTATGCAGCCAAGCTTTCAAAATCCCAGTCCtctaatttcaattttaata
tCCTCATCAATCAACAGGATAATCTGATCTAGAACACttatcttttcaac
ttttttatgcttttttcCGATAATTCTTGTTTAACAAACCCTTCTTGTGG
CAGATCCGGCAAATGAACCGGCTACGTTCTTTTATTACACCTGCTTTAAC
AAGACTAACACGATCAGCAGCAGTGAAGCGCTTTGCCTTGGAGAAGCAGT
CAATATTTAGTAGAGACAATAGCGCAACATGTGGCAGTTCCCCATGACCT
TCAGCTGCACACTTTTTGGAAAAGCGGTTTGGGCAAGCGCTTGTGGACGG
TTCCTGGTCACTGTCATGATCAGTCATTTTGAACACCAGAACGTACGTAA
TTTCTACAGCAAAATGCATAGAAAGTTCTTCGTAATAGCGAAGTGCCAAG
CCAAAAATAGGGGGGtccaaaaatgactttttttggaaattttgatgttt
aaccatcttttttaaattaatttttcatgctgattccgaatttgaaaT Run BLAST on NCBI protein sequence of TCONS_00042236-protein >TCONS_00042236-protein ID=TCONS_00042236-protein|Name=TCONS_00042236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MVKHQNFQKKSFLDPPIFGLALRYYEELSMHFAVEITYVLVFKMTDHDSD
QEPSTSACPNRFSKKCAAEGHGELPHVALLSLLNIDCFSKAKRFTAADRV
SLVKAGVIKERSRFICRICHKKGLLNKNYRKKA Run BLAST on NCBI transcript from alignment at sc0003298:7559..8456 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042236 ID=TCONS_00042236|Name=TCONS_00042236|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at sc0003298:7559..8456 (Clytia hemisphaerica)
Atttcaaattcggaatcagcatgaaaaattaatttaaaaaagatggttaa
acatcaaaatttccaaaaaaagtcatttttggaCCCCCCTATTTTTGGCT
TGGCACTTCGCTATTACGAAGAACTTTCTATGCATTTTGCTGTAGAAATT
ACGTACGTTCTGGTGTTCAAAATGACTGATCATGACAGTGACCAGGAACC
GTCCACAAGCGCTTGCCCAAACCGCTTTTCCAAAAAGTGTGCAGCTGAAG
GTCATGGGGAACTGCCACATGTTGCGCTATTGTCTCTACTAAATATTGAC
TGCTTCTCCAAGGCAAAGCGCTTCACTGCTGCTGATCGTGTTAGTCTTGT
TAAAGCAGGTGTAATAAAAGAACGTAGCCGGTTCATTTGCCGGATCTGCC
ACAAGAAGGGTTTGTTAAACAAGAATTATCGgaaaaaagcataaaaaagt
tgaaaagataaGTGTTCTAGATCAGATTATCCTGTTGATTGATGAGGata
ttaaaattgaaattagaGGACTGGGATTTTGAAAGCTTGGCTGCATACTC
CATTGTTAATTTGGTGAATGCGCGCCCCCGACCTGTAGTTGAGTCTTTTA
AAGAACTTTGTAGCATAACAGACGTGTCTAATACTACCGACATCGCAAAA
ATGGCCCATGCCATGGAATGTATTTACGGATGTCGGCGGGCAAAAGTGGT
ATTGCCACTCTCTTTGATGACAAATGCAGTGAACCACGCTGTAACACAGC
AAACAGTCAACGATGCTAACTTCGAAATTAACGCCTGGGGGTAGCTACAC
CTACATTCAGGAATTAGCAAAGGTCACTGCTGGCACACCGAAGATTATAC
CTGATGTGGATATAAAAAGCATGGTCGATAACGGTCAAGTTCTTGGCA Coding sequence (CDS) from alignment at sc0003298:7559..8456 >TCONS_00042236 ID=TCONS_00042236|Name=TCONS_00042236|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0003298:7559..8456 (Clytia hemisphaerica)
atggttaaacatcaaaatttccaaaaaaagtcatttttggaCCCCCCTAT
TTTTGGCTTGGCACTTCGCTATTACGAAGAACTTTCTATGCATTTTGCTG
TAGAAATTACGTACGTTCTGGTGTTCAAAATGACTGATCATGACAGTGAC
CAGGAACCGTCCACAAGCGCTTGCCCAAACCGCTTTTCCAAAAAGTGTGC
AGCTGAAGGTCATGGGGAACTGCCACATGTTGCGCTATTGTCTCTACTAA
ATATTGACTGCTTCTCCAAGGCAAAGCGCTTCACTGCTGCTGATCGTGTT
AGTCTTGTTAAAGCAGGTGTAATAAAAGAACGTAGCCGGTTCATTTGCCG
GATCTGCCACAAGAAGGGTTTGTTAAACAAGAATTATCGgaaaaaagcat
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042236-exon-sc0003298-1491911889:7559..8456 | TCONS_00042236-exon-sc0003298-1491911889:7559..8456 | Clytia hemisphaerica | exon |
| TCONS_00042236-exon-sc0003298-1510915933:7559..8456 | TCONS_00042236-exon-sc0003298-1510915933:7559..8456 | Clytia hemisphaerica | exon |
| TCONS_00042236-exon-sc0003298-1575043694:7559..8456 | TCONS_00042236-exon-sc0003298-1575043694:7559..8456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003298 | supercontig | sc0003298:7559..8456 . |
Blast
The following BLAST results are available for this feature:
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