TCONS_00042236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042236
Unique NameTCONS_00042236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042236 ID=TCONS_00042236|Name=TCONS_00042236|organism=Clytia hemisphaerica|type=transcript|length=898bp
TGCCAAGAACTTGACCGTTATCGACCATGCTTTTTATATCCACATCAGGT
ATAATCTTCGGTGTGCCAGCAGTGACCTTTGCTAATTCCTGAATGTAGGT
GTAGCTACCCCCAGGCGTTAATTTCGAAGTTAGCATCGTTGACTGTTTGC
TGTGTTACAGCGTGGTTCACTGCATTTGTCATCAAAGAGAGTGGCAATAC
CACTTTTGCCCGCCGACATCCGTAAATACATTCCATGGCATGGGCCATTT
TTGCGATGTCGGTAGTATTAGACACGTCTGTTATGCTACAAAGTTCTTTA
AAAGACTCAACTACAGGTCGGGGGCGCGCATTCACCAAATTAACAATGGA
GTATGCAGCCAAGCTTTCAAAATCCCAGTCCtctaatttcaattttaata
tCCTCATCAATCAACAGGATAATCTGATCTAGAACACttatcttttcaac
ttttttatgcttttttcCGATAATTCTTGTTTAACAAACCCTTCTTGTGG
CAGATCCGGCAAATGAACCGGCTACGTTCTTTTATTACACCTGCTTTAAC
AAGACTAACACGATCAGCAGCAGTGAAGCGCTTTGCCTTGGAGAAGCAGT
CAATATTTAGTAGAGACAATAGCGCAACATGTGGCAGTTCCCCATGACCT
TCAGCTGCACACTTTTTGGAAAAGCGGTTTGGGCAAGCGCTTGTGGACGG
TTCCTGGTCACTGTCATGATCAGTCATTTTGAACACCAGAACGTACGTAA
TTTCTACAGCAAAATGCATAGAAAGTTCTTCGTAATAGCGAAGTGCCAAG
CCAAAAATAGGGGGGtccaaaaatgactttttttggaaattttgatgttt
aaccatcttttttaaattaatttttcatgctgattccgaatttgaaaT
Run BLAST on NCBI

protein sequence of TCONS_00042236-protein

>TCONS_00042236-protein ID=TCONS_00042236-protein|Name=TCONS_00042236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MVKHQNFQKKSFLDPPIFGLALRYYEELSMHFAVEITYVLVFKMTDHDSD
QEPSTSACPNRFSKKCAAEGHGELPHVALLSLLNIDCFSKAKRFTAADRV
SLVKAGVIKERSRFICRICHKKGLLNKNYRKKA
Run BLAST on NCBI

transcript from alignment at sc0003298:7559..8456

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042236 ID=TCONS_00042236|Name=TCONS_00042236|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at sc0003298:7559..8456 (Clytia hemisphaerica)
Atttcaaattcggaatcagcatgaaaaattaatttaaaaaagatggttaa
acatcaaaatttccaaaaaaagtcatttttggaCCCCCCTATTTTTGGCT
TGGCACTTCGCTATTACGAAGAACTTTCTATGCATTTTGCTGTAGAAATT
ACGTACGTTCTGGTGTTCAAAATGACTGATCATGACAGTGACCAGGAACC
GTCCACAAGCGCTTGCCCAAACCGCTTTTCCAAAAAGTGTGCAGCTGAAG
GTCATGGGGAACTGCCACATGTTGCGCTATTGTCTCTACTAAATATTGAC
TGCTTCTCCAAGGCAAAGCGCTTCACTGCTGCTGATCGTGTTAGTCTTGT
TAAAGCAGGTGTAATAAAAGAACGTAGCCGGTTCATTTGCCGGATCTGCC
ACAAGAAGGGTTTGTTAAACAAGAATTATCGgaaaaaagcataaaaaagt
tgaaaagataaGTGTTCTAGATCAGATTATCCTGTTGATTGATGAGGata
ttaaaattgaaattagaGGACTGGGATTTTGAAAGCTTGGCTGCATACTC
CATTGTTAATTTGGTGAATGCGCGCCCCCGACCTGTAGTTGAGTCTTTTA
AAGAACTTTGTAGCATAACAGACGTGTCTAATACTACCGACATCGCAAAA
ATGGCCCATGCCATGGAATGTATTTACGGATGTCGGCGGGCAAAAGTGGT
ATTGCCACTCTCTTTGATGACAAATGCAGTGAACCACGCTGTAACACAGC
AAACAGTCAACGATGCTAACTTCGAAATTAACGCCTGGGGGTAGCTACAC
CTACATTCAGGAATTAGCAAAGGTCACTGCTGGCACACCGAAGATTATAC
CTGATGTGGATATAAAAAGCATGGTCGATAACGGTCAAGTTCTTGGCA

Coding sequence (CDS) from alignment at sc0003298:7559..8456

>TCONS_00042236 ID=TCONS_00042236|Name=TCONS_00042236|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0003298:7559..8456 (Clytia hemisphaerica)
atggttaaacatcaaaatttccaaaaaaagtcatttttggaCCCCCCTAT
TTTTGGCTTGGCACTTCGCTATTACGAAGAACTTTCTATGCATTTTGCTG
TAGAAATTACGTACGTTCTGGTGTTCAAAATGACTGATCATGACAGTGAC
CAGGAACCGTCCACAAGCGCTTGCCCAAACCGCTTTTCCAAAAAGTGTGC
AGCTGAAGGTCATGGGGAACTGCCACATGTTGCGCTATTGTCTCTACTAA
ATATTGACTGCTTCTCCAAGGCAAAGCGCTTCACTGCTGCTGATCGTGTT
AGTCTTGTTAAAGCAGGTGTAATAAAAGAACGTAGCCGGTTCATTTGCCG
GATCTGCCACAAGAAGGGTTTGTTAAACAAGAATTATCGgaaaaaagcat
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026096XLOC_026096Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042236-proteinTCONS_00042236-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042236-exon-sc0003298-1491911889:7559..8456TCONS_00042236-exon-sc0003298-1491911889:7559..8456Clytia hemisphaericaexon
TCONS_00042236-exon-sc0003298-1510915933:7559..8456TCONS_00042236-exon-sc0003298-1510915933:7559..8456Clytia hemisphaericaexon
TCONS_00042236-exon-sc0003298-1575043694:7559..8456TCONS_00042236-exon-sc0003298-1575043694:7559..8456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003298supercontigsc0003298:7559..8456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02983	1.40627	1.16603	1.54005	0.0694394	0.164616	0.529605	0.314588	0.218951	0.107494	0.368105	0.379026	0.0684909	0.106693	0.0584773	0	0	0.158479	0	0.0572781	0.050146	0.0737406	0	0.107351	0.221137	0.0493399	0.141211	0.0753518	0.0571517	0.0582285
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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