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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042233 ID=TCONS_00042233|Name=TCONS_00042233|organism=Clytia hemisphaerica|type=transcript|length=2414bp
CCCCTATCAACACTTCAAGATGGAGGGTTTGCATCTCATAAAGGATCTCT
TAAACAAGGACGATCTAATGATAAAACTGGATTTAAAGGATGCATATTTC
AGCGTTCCATTAGGTCCAGAGTCCAGGAAATTTGTCAGGTTCGAGTGGAA
AGGCAAACTTTACCAATTTCTGTGTATGTGTTTCGGGCTTGGTCCAGCTC
CAagactttttacaaaattgatgaAAGTTCCTGTGACTATTTTGAGGAAA
CTCAATATCAGATTGATTGTCTATCTAGACGACATTCTAGTAATGGGCAG
CTCTATGTCGGAAATTCTGATGGCCAGGGACACTTTGATTTTTCTCCTTC
AGAGTCTGGGTTTCGTGATAAATATTCAGAAGTCTCACTTACAACCATGC
CAGGAGATAGAGTTTTTGGGGGTGATAGTCAACTCCTCCAAGATGGAATT
GACTTTACCATCagagaaagtagaaaaaatcctAAATCTATGCGAAAAAC
TCTTGTCTCAGAAGGTGGTCAGTATTTTGGAGTTAACAAAACTTCTAGGG
AAGCTAACTTCTTCAGCAGTAGCAGTGTTAGCAGTGCCTCTACACTACAG
AAAGATACAAAGGAGTCAAATAAATGCCCTTTGGAAGTCTCAGTCGTATC
ACACCAACATTGTACTCCCCGAGGAGGTGAAGTTAGAACTGAAATGGTGG
TTGGAAAACCTGAGACTCTCAAACGGGAAGTCCTTGTTGACACCAGAACC
AGACCTAGTTATGTCAACAGATGCCTCAAAGAAGGGCTGGGGAGTGGACT
GTCAAGGTCAAAGGACAGGAGGCCCTTGGAACCAGGAGGAGAGTGGCCTT
CACATAAACATTTTAGAACTGAAAGCAGCCCTCTTGGGGATAAAAACTTA
TACGATGAACCAACCAGGGATTCGCTCAGTGCATTTGCAGATGGACAATA
CATCAGCCCTTTCTTACATTGTGAAGATGGGGGGGGACACAGAACAAAGT
GATGATAGACTTGAGCCAGAAGTTATGGGATTACTTGATATCCAAGGGGA
TCACGATTACTGTAGAGTATCTCCCAGGGAAGCTAAATGTAACAGCAGAT
TGGGAGTCAAGGAATGTTCAGGATTCCAGCAAATGGAGATTAGACCGGAA
AGTTTTCAAAGCAATTTGTCAAGCTTTCGGGATACCTCAGATAGATCTGT
TTGCGTCAAGGGTGTCCCATCAAGTTCCTTGTTACGTGTCATGGAAACCA
GACCCCTTTTGTCAAAGCGTGGATGCCTTTCAGACAAGTTGGGAAAACAA
CCTAAATTATGCCTTCCCACCGTTTTGTCTCATCGGTCGGGTTCTGGACA
AATTAGCAAGGGAGCAAGCAGAAATGATTCTGGTGACACCTCTATGGCAG
GGACAACCTTGGTATCCCAGACTCTTACAGATGTGTGTTCAACCGCCTCT
TTTGATTCCTTCGTTTCCAAGCCTATTGTTGGGCCCTCAAGCTCAACTGC
ATCCCCTGATGAGAGAAGGGTCTCTAACTCTAGCGGTCTGGCGTGTTTCA
GGAAAACCTTGGAAACAGAAGGCATTTCAGGCAAAGCAGCAGTCCTTATA
TCAAATTCCAGGAGAAAAGGTTCCATCTCTCATTATGAATCGGCCTGGAG
AAAATGGTCTTGCTGGGCTAGTGAACGACAGGCTGATCCCACTTCATGTT
CTTTGTCTCTGATTCTAGAATTTCTGGCAGATTTGTTTGAGAAGAATTTG
CAGTACAGCACTATTTGTGGATATAGGTCAGCAATTTCAGCTTATCATAA
TCCAATTGAGGGGCAACCAGTGGGTCGTCATCCTAGAGTTAGTGCCCTGT
TGACGGGTGTCTTTAATTTAAGGCCACCCCTGCCAAAGTATACGTTTGTA
TGGGATGTCTCTGATGTTTTGAATTACATTAGACAAATGCCGGTTGATGA
CTCGATCTCAAATAAAGACTTAACCCTAAAACTGTCATCACTTTTGGGTA
TCGCATCAGCTAGTAGAGCGTCTGAGATCTGTTATCTAGACATTAggtat
ttggttaaagggaaagATTCTTATGAGTTTCACTTCGTTAAACTCACCAA
GTCCTGGAGGAGAGGCAAACCAAGACCAAAAATATGTTTCCATTTCTTAA
CAGAAGAACTAGAACTTTGTATTTGTAAGACTATAGACCAGTATTTGACA
AGATCAAAAGAATGGAGATCAGATCAGGATACCCAACTTTTGTTAAGTCA
TATAGAACCCCATGGCCCAGTGGCAGTGGGGACTGTTTCTAGGTGGCTAA
TGGAACTGTTAGGTTTGGCGGGAATTgatacaaaaaaattttctggtcAC
TCTACTAGACACGCTTCTACTTCCAAAGCTAAATTAGTTGGGATACCCTT
AAAAGAAATTGTCC Run BLAST on NCBI protein sequence of TCONS_00042233-protein >TCONS_00042233-protein ID=TCONS_00042233-protein|Name=TCONS_00042233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp
PYQHFKMEGLHLIKDLLNKDDLMIKLDLKDAYFSVPLGPESRKFVRFEWK
GKLYQFLCMCFGLGPAPRLFTKLMKVPVTILRKLNIRLIVYLDDILVMGS
SMSEILMARDTLIFLLQSLGFVINIQKSHLQPCQEIEFLGVIVNSSKMEL
TLPSEKVEKILNLCEKLLSQKVVSILELTKLLGKLTSSAVAVLAVPLHYR
KIQRSQINALWKSQSYHTNIVLPEEVKLELKWWLENLRLSNGKSLLTPEP
DLVMSTDASKKGWGVDCQGQRTGGPWNQEESGLHINILELKAALLGIKTY
TMNQPGIRSVHLQMDNTSALSYIVKMGGDTEQSDDRLEPEVMGLLDIQGD
HDYCRVSPREAKCNSRLGVKECSGFQQMEIRPESFQSNLSSFRDTSDRSV
CVKGVPSSSLLRVMETRPLLSKRGCLSDKLGKQPKLCLPTVLSHRSGSGQ
ISKGASRNDSGDTSMAGTTLVSQTLTDVCSTASFDSFVSKPIVGPSSSTA
SPDERRVSNSSGLACFRKTLETEGISGKAAVLISNSRRKGSISHYESAWR
KWSCWASERQADPTSCSLSLILEFLADLFEKNLQYSTICGYRSAISAYHN
PIEGQPVGRHPRVSALLTGVFNLRPPLPKYTFVWDVSDVLNYIRQMPVDD
SISNKDLTLKLSSLLGIASASRASEICYLDIRYLVKGKDSYEFHFVKLTK
SWRRGKPRPKICFHFLTEELELCICKTIDQYLTRSKEWRSDQDTQLLLSH
IEPHGPVAVGTVSRWLMELLGLAGIDTKKFSGHSTRHASTSKAKLVGIPL
KEIV Run BLAST on NCBI transcript from alignment at sc0003296:6606..9019 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042233 ID=TCONS_00042233|Name=TCONS_00042233|organism=Clytia hemisphaerica|type=transcript|length=2414bp|location=Sequence derived from alignment at sc0003296:6606..9019 (Clytia hemisphaerica)
GGACAATTTCTTTTAAGGGTATCCCAACTAATTTAGCTTTGGAAGTAGAA
GCGTGTCTAGTAGAGTgaccagaaaatttttttgtatcAATTCCCGCCAA
ACCTAACAGTTCCATTAGCCACCTAGAAACAGTCCCCACTGCCACTGGGC
CATGGGGTTCTATATGACTTAACAAAAGTTGGGTATCCTGATCTGATCTC
CATTCTTTTGATCTTGTCAAATACTGGTCTATAGTCTTACAAATACAAAG
TTCTAGTTCTTCTGTTAAGAAATGGAAACATATTTTTGGTCTTGGTTTGC
CTCTCCTCCAGGACTTGGTGAGTTTAACGAAGTGAAACTCATAAGAATct
ttccctttaaccaaataccTAATGTCTAGATAACAGATCTCAGACGCTCT
ACTAGCTGATGCGATACCCAAAAGTGATGACAGTTTTAGGGTTAAGTCTT
TATTTGAGATCGAGTCATCAACCGGCATTTGTCTAATGTAATTCAAAACA
TCAGAGACATCCCATACAAACGTATACTTTGGCAGGGGTGGCCTTAAATT
AAAGACACCCGTCAACAGGGCACTAACTCTAGGATGACGACCCACTGGTT
GCCCCTCAATTGGATTATGATAAGCTGAAATTGCTGACCTATATCCACAA
ATAGTGCTGTACTGCAAATTCTTCTCAAACAAATCTGCCAGAAATTCTAG
AATCAGAGACAAAGAACATGAAGTGGGATCAGCCTGTCGTTCACTAGCCC
AGCAAGACCATTTTCTCCAGGCCGATTCATAATGAGAGATGGAACCTTTT
CTCCTGGAATTTGATATAAGGACTGCTGCTTTGCCTGAAATGCCTTCTGT
TTCCAAGGTTTTCCTGAAACACGCCAGACCGCTAGAGTTAGAGACCCTTC
TCTCATCAGGGGATGCAGTTGAGCTTGAGGGCCCAACAATAGGCTTGGAA
ACGAAGGAATCAAAAGAGGCGGTTGAACACACATCTGTAAGAGTCTGGGA
TACCAAGGTTGTCCCTGCCATAGAGGTGTCACCAGAATCATTTCTGCTTG
CTCCCTTGCTAATTTGTCCAGAACCCGACCGATGAGACAAAACGGTGGGA
AGGCATAATTTAGGTTGTTTTCCCAACTTGTCTGAAAGGCATCCACGCTT
TGACAAAAGGGGTCTGGTTTCCATGACACGTAACAAGGAACTTGATGGGA
CACCCTTGACGCAAACAGATCTATCTGAGGTATCCCGAAAGCTTGACAAA
TTGCTTTGAAAACTTTCCGGTCTAATCTCCATTTGCTGGAATCCTGAACA
TTCCTTGACTCCCAATCTGCTGTTACATTTAGCTTCCCTGGGAGATACTC
TACAGTAATCGTGATCCCCTTGGATATCAAGTAATCCCATAACTTCTGGC
TCAAGTCTATCATCACTTTGTTCTGTGTCCCCCCCCATCTTCACAATGTA
AGAAAGGGCTGATGTATTGTCCATCTGCAAATGCACTGAGCGAATCCCTG
GTTGGTTCATCGTATAAGTTTTTATCCCCAAGAGGGCTGCTTTCAGTTCT
AAAATGTTTATGTGAAGGCCACTCTCCTCCTGGTTCCAAGGGCCTCCTGT
CCTTTGACCTTGACAGTCCACTCCCCAGCCCTTCTTTGAGGCATCTGTTG
ACATAACTAGGTCTGGTTCTGGTGTCAACAAGGACTTCCCGTTTGAGAGT
CTCAGGTTTTCCAACCACCATTTCAGTTCTAACTTCACCTCCTCGGGGAG
TACAATGTTGGTGTGATACGACTGAGACTTCCAAAGGGCATTTATTTGAC
TCCTTTGTATCTTTCTGTAGTGTAGAGGCACTGCTAACACTGCTACTGCT
GAAGAAGTTAGCTTCCCTAGAAGTTTTGTTAACTCCAAAATACTGACCAC
CTTCTGAGACAAGAGTTTTTCGCATAGATTTaggattttttctactttct
ctGATGGTAAAGTCAATTCCATCTTGGAGGAGTTGACTATCACCCCCAAA
AACTCTATCTCCTGGCATGGTTGTAAGTGAGACTTCTGAATATTTATCAC
GAAACCCAGACTCTGAAGGAGAAAAATCAAAGTGTCCCTGGCCATCAGAA
TTTCCGACATAGAGCTGCCCATTACTAGAATGTCGTCTAGATAGACAATC
AATCTGATATTGAGTTTCCTCAAAATAGTCACAGGAACTTtcatcaattt
tgtaaaaagtctTGGAGCTGGACCAAGCCCGAAACACATACACAGAAATT
GGTAAAGTTTGCCTTTCCACTCGAACCTGACAAATTTCCTGGACTCTGGA
CCTAATGGAACGCTGAAATATGCATCCTTTAAATCCAGTTTTATCATTAG
ATCGTCCTTGTTTAAGAGATCCTTTATGAGATGCAAACCCTCCATCTTGA
AGTGTTGATAGGGG Coding sequence (CDS) from alignment at sc0003296:6606..9019 >TCONS_00042233 ID=TCONS_00042233|Name=TCONS_00042233|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0003296:6606..9019 (Clytia hemisphaerica)
GACAATTTCTTTTAAGGGTATCCCAACTAATTTAGCTTTGGAAGTAGAAG
CGTGTCTAGTAGAGTgaccagaaaatttttttgtatcAATTCCCGCCAAA
CCTAACAGTTCCATTAGCCACCTAGAAACAGTCCCCACTGCCACTGGGCC
ATGGGGTTCTATATGACTTAACAAAAGTTGGGTATCCTGATCTGATCTCC
ATTCTTTTGATCTTGTCAAATACTGGTCTATAGTCTTACAAATACAAAGT
TCTAGTTCTTCTGTTAAGAAATGGAAACATATTTTTGGTCTTGGTTTGCC
TCTCCTCCAGGACTTGGTGAGTTTAACGAAGTGAAACTCATAAGAATctt
tccctttaaccaaataccTAATGTCTAGATAACAGATCTCAGACGCTCTA
CTAGCTGATGCGATACCCAAAAGTGATGACAGTTTTAGGGTTAAGTCTTT
ATTTGAGATCGAGTCATCAACCGGCATTTGTCTAATGTAATTCAAAACAT
CAGAGACATCCCATACAAACGTATACTTTGGCAGGGGTGGCCTTAAATTA
AAGACACCCGTCAACAGGGCACTAACTCTAGGATGACGACCCACTGGTTG
CCCCTCAATTGGATTATGATAAGCTGAAATTGCTGACCTATATCCACAAA
TAGTGCTGTACTGCAAATTCTTCTCAAACAAATCTGCCAGAAATTCTAGA
ATCAGAGACAAAGAACATGAAGTGGGATCAGCCTGTCGTTCACTAGCCCA
GCAAGACCATTTTCTCCAGGCCGATTCATAATGAGAGATGGAACCTTTTC
TCCTGGAATTTGATATAAGGACTGCTGCTTTGCCTGAAATGCCTTCTGTT
TCCAAGGTTTTCCTGAAACACGCCAGACCGCTAGAGTTAGAGACCCTTCT
CTCATCAGGGGATGCAGTTGAGCTTGAGGGCCCAACAATAGGCTTGGAAA
CGAAGGAATCAAAAGAGGCGGTTGAACACACATCTGTAAGAGTCTGGGAT
ACCAAGGTTGTCCCTGCCATAGAGGTGTCACCAGAATCATTTCTGCTTGC
TCCCTTGCTAATTTGTCCAGAACCCGACCGATGAGACAAAACGGTGGGAA
GGCATAATTTAGGTTGTTTTCCCAACTTGTCTGAAAGGCATCCACGCTTT
GACAAAAGGGGTCTGGTTTCCATGACACGTAACAAGGAACTTGATGGGAC
ACCCTTGACGCAAACAGATCTATCTGAGGTATCCCGAAAGCTTGACAAAT
TGCTTTGAAAACTTTCCGGTCTAATCTCCATTTGCTGGAATCCTGAACAT
TCCTTGACTCCCAATCTGCTGTTACATTTAGCTTCCCTGGGAGATACTCT
ACAGTAATCGTGATCCCCTTGGATATCAAGTAATCCCATAACTTCTGGCT
CAAGTCTATCATCACTTTGTTCTGTGTCCCCCCCCATCTTCACAATGTAA
GAAAGGGCTGATGTATTGTCCATCTGCAAATGCACTGAGCGAATCCCTGG
TTGGTTCATCGTATAAGTTTTTATCCCCAAGAGGGCTGCTTTCAGTTCTA
AAATGTTTATGTGAAGGCCACTCTCCTCCTGGTTCCAAGGGCCTCCTGTC
CTTTGACCTTGACAGTCCACTCCCCAGCCCTTCTTTGAGGCATCTGTTGA
CATAACTAGGTCTGGTTCTGGTGTCAACAAGGACTTCCCGTTTGAGAGTC
TCAGGTTTTCCAACCACCATTTCAGTTCTAACTTCACCTCCTCGGGGAGT
ACAATGTTGGTGTGATACGACTGAGACTTCCAAAGGGCATTTATTTGACT
CCTTTGTATCTTTCTGTAGTGTAGAGGCACTGCTAACACTGCTACTGCTG
AAGAAGTTAGCTTCCCTAGAAGTTTTGTTAACTCCAAAATACTGACCACC
TTCTGAGACAAGAGTTTTTCGCATAGATTTaggattttttctactttctc
tGATGGTAAAGTCAATTCCATCTTGGAGGAGTTGACTATCACCCCCAAAA
ACTCTATCTCCTGGCATGGTTGTAAGTGAGACTTCTGAATATTTATCACG
AAACCCAGACTCTGAAGGAGAAAAATCAAAGTGTCCCTGGCCATCAGAAT
TTCCGACATAGAGCTGCCCATTACTAGAATGTCGTCTAGATAGACAATCA
ATCTGATATTGAGTTTCCTCAAAATAGTCACAGGAACTTtcatcaatttt
gtaaaaagtctTGGAGCTGGACCAAGCCCGAAACACATACACAGAAATTG
GTAAAGTTTGCCTTTCCACTCGAACCTGACAAATTTCCTGGACTCTGGAC
CTAATGGAACGCTGAAATATGCATCCTTTAAATCCAGTTTTATCATTAGA
TCGTCCTTGTTTAAGAGATCCTTTATGAGATGCAAACCCTCCATCTTGAA
GTGTTGATAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042233-exon-sc0003296-1491911889:6606..9019 | TCONS_00042233-exon-sc0003296-1491911889:6606..9019 | Clytia hemisphaerica | exon |
| TCONS_00042233-exon-sc0003296-1510915933:6606..9019 | TCONS_00042233-exon-sc0003296-1510915933:6606..9019 | Clytia hemisphaerica | exon |
| TCONS_00042233-exon-sc0003296-1575043694:6606..9019 | TCONS_00042233-exon-sc0003296-1575043694:6606..9019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003296 | supercontig | sc0003296:6606..9019 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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