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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00042233-protein ID=TCONS_00042233-protein|Name=TCONS_00042233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp
PYQHFKMEGLHLIKDLLNKDDLMIKLDLKDAYFSVPLGPESRKFVRFEWK
GKLYQFLCMCFGLGPAPRLFTKLMKVPVTILRKLNIRLIVYLDDILVMGS
SMSEILMARDTLIFLLQSLGFVINIQKSHLQPCQEIEFLGVIVNSSKMEL
TLPSEKVEKILNLCEKLLSQKVVSILELTKLLGKLTSSAVAVLAVPLHYR
KIQRSQINALWKSQSYHTNIVLPEEVKLELKWWLENLRLSNGKSLLTPEP
DLVMSTDASKKGWGVDCQGQRTGGPWNQEESGLHINILELKAALLGIKTY
TMNQPGIRSVHLQMDNTSALSYIVKMGGDTEQSDDRLEPEVMGLLDIQGD
HDYCRVSPREAKCNSRLGVKECSGFQQMEIRPESFQSNLSSFRDTSDRSV
CVKGVPSSSLLRVMETRPLLSKRGCLSDKLGKQPKLCLPTVLSHRSGSGQ
ISKGASRNDSGDTSMAGTTLVSQTLTDVCSTASFDSFVSKPIVGPSSSTA
SPDERRVSNSSGLACFRKTLETEGISGKAAVLISNSRRKGSISHYESAWR
KWSCWASERQADPTSCSLSLILEFLADLFEKNLQYSTICGYRSAISAYHN
PIEGQPVGRHPRVSALLTGVFNLRPPLPKYTFVWDVSDVLNYIRQMPVDD
SISNKDLTLKLSSLLGIASASRASEICYLDIRYLVKGKDSYEFHFVKLTK
SWRRGKPRPKICFHFLTEELELCICKTIDQYLTRSKEWRSDQDTQLLLSH
IEPHGPVAVGTVSRWLMELLGLAGIDTKKFSGHSTRHASTSKAKLVGIPL
KEIV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000477 | Reverse transcriptase domain | PFAM | PF00078 | RVT_1 | coord: 16..143
e-value: 1.9E-15
score: 56.9 |
| IPR000477 | Reverse transcriptase domain | PROSITE | PS50878 | RT_POL | coord: 1..143
score: 16.112 |
| IPR023109 | Integrase/recombinase, N-terminal | GENE3D | 1.10.150.130 | | coord: 529..603
e-value: 3.7E-7
score: 30.1 |
| None | No IPR available | GENE3D | 3.10.10.10 | | coord: 6..56
e-value: 6.5E-8
score: 32.1 |
| None | No IPR available | GENE3D | 3.30.70.270 | | coord: 57..151
e-value: 8.9E-14
score: 50.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 445..465 |
| None | No IPR available | CDD | cd09275 | RNase_HI_RT_DIRS1 | coord: 256..328
e-value: 2.68336E-19
score: 84.2571 |
| None | No IPR available | CDD | cd03714 | RT_DIRS1 | coord: 26..143
e-value: 8.80173E-31
score: 117.059 |
| None | No IPR available | SUPERFAMILY | 56672 | DNA/RNA polymerases | coord: 4..322 |
| IPR013762 | Integrase-like, catalytic domain | GENE3D | 1.10.443.10 | | coord: 636..804
e-value: 2.3E-8
score: 33.5 |
| IPR011010 | DNA breaking-rejoining enzyme, catalytic core | SUPERFAMILY | 56349 | DNA breaking-rejoining enzymes | coord: 654..803 |
| IPR010998 | Integrase, Lambda-type, N-terminal | SUPERFAMILY | 47823 | lambda integrase-like, N-terminal domain | coord: 533..622 |
Blast
The following BLAST results are available for this feature:
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