|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042232 ID=TCONS_00042232|Name=TCONS_00042232|organism=Clytia hemisphaerica|type=transcript|length=361bp
AAACAGATGGTGAGGAGTTTCGCCCtgatgaagatgaagacgaagaggaa
gatgaagatgaagaggAATCGGTCATTAAAGacaTACCGAAACAGAGAAC
TTACCACAGATGGTCCGAAGAGTCTAAATCCGACTTTGAGAAAACCTTTG
CGAAATGCTTGGCCGACGACAGAGGATTTCCTGgtAAAAAGGAGGTTGCT
GCGTTCATGGGACGACATCACGTTACCGCGAAACAGATAAAGACACGTGT
GACTAATTACCGGAAAGATCgtaaagataagaaaataaaattgatgaaaa
aaatgggCATTCATTAACACTGTTGGtcgtttgttttttgttttttttgt
tagcTACTGCT Run BLAST on NCBI protein sequence of TCONS_00042232-protein >TCONS_00042232-protein ID=TCONS_00042232-protein|Name=TCONS_00042232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
TDGEEFRPDEDEDEEEDEDEEESVIKDIPKQRTYHRWSEESKSDFEKTFA
KCLADDRGFPGKKEVAAFMGRHHVTAKQIKTRVTNYRKDRKDKKIKLMKK
MGIH Run BLAST on NCBI transcript from alignment at sc0003296:263..1754+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042232 ID=TCONS_00042232|Name=TCONS_00042232|organism=Clytia hemisphaerica|type=transcript|length=1492bp|location=Sequence derived from alignment at sc0003296:263..1754+ (Clytia hemisphaerica)
AAACAGATGGTGAGGAGTTTCGCCCtgatgaagatgaagacgaagaggaa
gatgaagatgaagaggAATCGGTCATTAAAGGTTCAGCTTTGGTCatcta
aattttaagtttttaggtCAATTCCTGGTGAAAAGCagaaatacaaaaaa
gtcacccaaaattagttcccttaaagtaTAGTCTCGATTTCCAGAATATT
ATATAAGGCGAGAGAGTTTTCATAAGCTTATTGTAAAGGATGATTGGCGC
AGTTGTTACATGCTATTTTCTAttgaattttggtcaaatttttccTCAAC
TCAATACGGAATTTAAAAGTTGTATTCCATTGTTATCGTCACGGGATGCA
ATTTAGAAGCACTTTTTCCAAACATCTTTAAAATTTAATTCTCATCACAA
GGTTAAATTAATATgtccaattttttatttcagacaTACCGAAACAGAGA
ACTTACCACAGATGGTCCGAAGAGTCTAAATCCGACTTTGAGAAAACCTT
TGCGAAATGCTTGGCCGACGACAGAGGATTTCCTGGTAAGATAATTTTTC
GATCCGCATGCATTCTTCTAATTCCAAGATGagttttcttcactttttgg
gcctacctcggaggtcctttaaattaactcatgttcgtccgttcgtttgt
CTCTTACCTTTTCTCGGGACTGGCTCATTAtttctttcagattttttgca
caaagatgcgtattagcaatgcccaaaacatgaccgagtccgatttttga
gaaaaatttcccagccgaaaatgccggaaatcccTTTTTTTGCAGAATTT
CATTGGACTTTATCCTaccatttctttgtttttttgacaCGAAAACGTTA
tcgatagcaatgcccaccatcaagcgtATTTCAATTgttaaaaactgatt
tttgaagccggaactttttAAAACTCGCCGGAACAGCCGTCGCCGgaaaa
tagtttttcttgaatttctcgagctgcactttatattttttttcatgaaa
ttttgcacactgatacaaaatggcaatacctaaaatgtgacggagcctga
tttaaAGAAAATTCCGGCGGAAAATCACGGAAATATGCCTTaaaaacttc
ttcttttttttggcattttctcgagatttcatcataagttttctctgatt
ttatgcacacttttaacaaagaaagaAGCGtgttagcaatgcccaaaaca
tggccaagtccaattttgaagaaaatttttttctggccgaaaattccgga
aatcgccgttatCGCCTAAAAAAAAGACAGTAGACAAttgttttgttgaa
tttcattattttaggtAAAAAGGAGGTTGCTGCGTTCATGGGACGACATC
ACGTTACCGCGAAACAGATAAAGACACGTGTGACTAATTACCGGAAAGAT
CgtaaagataagaaaataaaattgatgaaaaaaatgggCATTCATTAACA
CTGTTGGtcgtttgttttttgttttttttgttagcTACTGCT Coding sequence (CDS) from alignment at sc0003296:263..1754+ >TCONS_00042232 ID=TCONS_00042232|Name=TCONS_00042232|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0003296:263..1754+ (Clytia hemisphaerica)
ACAGATGGTGAGGAGTTTCGCCCtgatgaagatgaagacgaagaggaaga
tgaagatgaagaggAATCGGTCATTAAAGacaTACCGAAACAGAGAACTT
ACCACAGATGGTCCGAAGAGTCTAAATCCGACTTTGAGAAAACCTTTGCG
AAATGCTTGGCCGACGACAGAGGATTTCCTGgtAAAAAGGAGGTTGCTGC
GTTCATGGGACGACATCACGTTACCGCGAAACAGATAAAGACACGTGTGA
CTAATTACCGGAAAGATCgtaaagataagaaaataaaattgatgaaaaaa
atgggCATTCATTAAACAGATGGTGAGGAGTTTCGCCCtgatgaagatga
agacgaagaggaagatgaagatgaagaggAATCGGTCATTAAAGacaTAC
CGAAACAGAGAACTTACCACAGATGGTCCGAAGAGTCTAAATCCGACTTT
GAGAAAACCTTTGCGAAATGCTTGGCCGACGACAGAGGATTTCCTGgtAA
AAAGGAGGTTGCTGCGTTCATGGGACGACATCACGTTACCGCGAAACAGA
TAAAGACACGTGTGACTAATTACCGGAAAGATCgtaaagataagaaaata
aaattgatgaaaaaaatgggCATTCATTAAACAGATGGTGAGGAGTTTCG
CCCtgatgaagatgaagacgaagaggaagatgaagatgaagaggAATCGG
TCATTAAAGacaTACCGAAACAGAGAACTTACCACAGATGGTCCGAAGAG
TCTAAATCCGACTTTGAGAAAACCTTTGCGAAATGCTTGGCCGACGACAG
AGGATTTCCTGgtAAAAAGGAGGTTGCTGCGTTCATGGGACGACATCACG
TTACCGCGAAACAGATAAAGACACGTGTGACTAATTACCGGAAAGATCgt
aaagataagaaaataaaattgatgaaaaaaatgggCATTCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042232-exon-sc0003296-1491911889:263..343 | TCONS_00042232-exon-sc0003296-1491911889:263..343 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1510915933:263..343 | TCONS_00042232-exon-sc0003296-1510915933:263..343 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1575043694:263..343 | TCONS_00042232-exon-sc0003296-1575043694:263..343 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1491911889:696..797 | TCONS_00042232-exon-sc0003296-1491911889:696..797 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1510915933:696..797 | TCONS_00042232-exon-sc0003296-1510915933:696..797 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1575043694:696..797 | TCONS_00042232-exon-sc0003296-1575043694:696..797 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1491911889:1577..1754 | TCONS_00042232-exon-sc0003296-1491911889:1577..1754 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1510915933:1577..1754 | TCONS_00042232-exon-sc0003296-1510915933:1577..1754 | Clytia hemisphaerica | exon |
| TCONS_00042232-exon-sc0003296-1575043694:1577..1754 | TCONS_00042232-exon-sc0003296-1575043694:1577..1754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003296 | supercontig | sc0003296:263..1754 + |
Blast
The following BLAST results are available for this feature:
|
