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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042213 ID=TCONS_00042213|Name=TCONS_00042213|organism=Clytia hemisphaerica|type=transcript|length=467bp
AAAATTACTTCtcacaaaaattagttcccttaaggtactcaAAGTTTAAC
AAAATTTACTATTTTTTTCAGGGTGCAGACATTCAAATCGAAGGGAACGA
CACGAACTTCGGTTTGATTCGATTAGGAGATTGTGTAGAAAGAGAAGTAA
CGCTGGTTAATACAAGCCCTATTGAAGCTCGTTGGAAAATTTCGTATACT
TCCTATCAGGACCCAGATTCAGAATACCTACAAATCACACCAAATGAGGG
CGTTTTGGGCGCAAATAGTGAAGAAACAATCAACTTGAGATTCTGTCCGA
AAGAAGAGGTGACTTTTACCGGACACTTAACTTGTGACGTTGCGGACAGT
AAACCATGGTAAGTGATTCTTTGGATATGAgaataattttctgaaaatcg
cTATATAACATTCCCAGAAACCTTTCTGTCAATTCTCAACACGGTCGATA
CCGTTGCATATCTCAAT Run BLAST on NCBI protein sequence of TCONS_00042213-protein >TCONS_00042213-protein ID=TCONS_00042213-protein|Name=TCONS_00042213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
NYFSQKLVPLRYSKFNKIYYFFQGADIQIEGNDTNFGLIRLGDCVEREVT
LVNTSPIEARWKISYTSYQDPDSEYLQITPNEGVLGANSEETINLRFCPK
EEVTFTGHLTCDVADSKPW Run BLAST on NCBI transcript from alignment at sc0003284:10630..11877- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042213 ID=TCONS_00042213|Name=TCONS_00042213|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at sc0003284:10630..11877- (Clytia hemisphaerica)
AAAATTACTTCTCACAAAAATTAGTTCCCTTAAGGTACTCAAAGTTTAAC
AAAATTTACTATTTTTTTCAGGGTGCAGACATTCAAATCGAAGGGAACGA
CACGAACTTCGGTTTGATTCGATTAGGAGATTGTGTAGAAAGAGAAGTAA
CGCTGGTTAATACAAGCCCTATTGAAGCTCGTTGGAAAATTTCGTATACT
TCCTATCAGGTATCAAGATTTATATTTTTCAAGGAGTGATAACTAATATC
GGGGGGGGGGAGGAGAGTCAAGGTAAACGACCTACCGTATGGCCCTTAAG
GGTCTTGACCAAAGTGCACTGTAAGAGTTGAAATTATCAAAGATGAGAAA
AAGGGCACTCTAAGGGTGGAAAATCGGACCTCATTTTGCCTTAAAATTTT
CAAAAATTTTTCAAAAATGACTAAGCCAGTCACGGCCACAATCCATGGAT
CCTGGTTTGAATCCCCGTTTCCTCCAAAGGTCCGTACAGCTCATAGATAG
CCGGTCTGGCTTGTCCTGGACACCGTGAAAATAATCAAAAGACTGTTTTA
TAGTTCTAGATTATTTATCTGTCCATTTAAAACAACGACTTTTATCTATC
CATTTATCTAAATGCTACCTTTGCTTAAAGTCCCTAGAAAGCACAGCACA
GGCTGATTAGTGGACATTGAAAAATTAGTTGATCAAAATTCAATCAATGA
ATGCTTTAGCTCAAATATTCGATCTAAATCAAGCTTTTGGTCAAGGAGCT
GATGACAGCAAAATGTATCATTTTGACATTCCTTGAATTTCAAATTGTAT
AATTTGGCATTAAAAAGAAACAAAGTCATGAAAATATTATCTCCCGATAA
TGATGTCATCCGCGAAATTAAATCTCCTACGAAATCTTGAAGTTTCGCGG
ATGAACTCGACTGCGAAATTCAATCCCCGCGAAAAAATTTCCCATTAACG
TAGCATATTTGAAAACTCTCATATTGTTTTATTGTATTAGGACCCAGATT
CAGAATACCTACAAATCACACCAAATGAGGGCGTTTTGGGCGCAAATAGT
GAAGAAACAATCAACTTGAGATTCTGTCCGAAAGAAGAGGTGACTTTTAC
CGGACACTTAACTTGTGACGTTGCGGACAGTAAACCATGGTAAGTGATTC
TTTGGATATGAGAATAATTTTCTGAAAATCGCTATATAACATTCCCAGAA
ACCTTTCTGTCAATTCTCAACACGGTCGATACCGTTGCATATCTCAAT Coding sequence (CDS) from alignment at sc0003284:10630..11877- >TCONS_00042213 ID=TCONS_00042213|Name=TCONS_00042213|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0003284:10630..11877- (Clytia hemisphaerica)
GACCCAGATTCAGAATACCTACAAATCACACCAAATGAGGGCGTTTTGGG
CGCAAATAGTGAAGAAACAATCAACTTGAGATTCTGTCCGAAAGAAGAGG
TGACTTTTACCGGACACTTAACTTGTGACGTTGCGGACAGTAAACCATGG
TAAAATTACTTCTCACAAAAATTAGTTCCCTTAAGGTACTCAAAGTTTAA
CAAAATTTACTATTTTTTTCAGGGTGCAGACATTCAAATCGAAGGGAACG
ACACGAACTTCGGTTTGATTCGATTAGGAGATTGTGTAGAAAGAGAAGTA
ACGCTGGTTAATACAAGCCCTATTGAAGCTCGTTGGAAAATTTCGTATAC
TTCCTATCAGGACCCAGATTCAGAATACCTACAAATCACACCAAATGAGG
GCGTTTTGGGCGCAAATAGTGAAGAAACAATCAACTTGAGATTCTGTCCG
AAAGAAGAGGTGACTTTTACCGGACACTTAACTTGTGACGTTGCGGACAG
TAAACCATGGTAAAATTACTTCTCACAAAAATTAGTTCCCTTAAGGTACT
CAAAGTTTAACAAAATTTACTATTTTTTTCAGGGTGCAGACATTCAAATC
GAAGGGAACGACACGAACTTCGGTTTGATTCGATTAGGAGATTGTGTAGA
AAGAGAAGTAACGCTGGTTAATACAAGCCCTATTGAAGCTCGTTGGAAAA
TTTCGTATACTTCCTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042213-exon-sc0003284-1575043694:11669..11877 | TCONS_00042213-exon-sc0003284-1575043694:11669..11877 | Clytia hemisphaerica | exon |
| TCONS_00042213-exon-sc0003284-1575043694:10630..10887 | TCONS_00042213-exon-sc0003284-1575043694:10630..10887 | Clytia hemisphaerica | exon |
| TCONS_00042213-exon-sc0003284-1510915933:11669..11877 | TCONS_00042213-exon-sc0003284-1510915933:11669..11877 | Clytia hemisphaerica | exon |
| TCONS_00042213-exon-sc0003284-1510915933:10630..10887 | TCONS_00042213-exon-sc0003284-1510915933:10630..10887 | Clytia hemisphaerica | exon |
| TCONS_00042213-exon-sc0003284-1491911889:11669..11877 | TCONS_00042213-exon-sc0003284-1491911889:11669..11877 | Clytia hemisphaerica | exon |
| TCONS_00042213-exon-sc0003284-1491911889:10630..10887 | TCONS_00042213-exon-sc0003284-1491911889:10630..10887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003284 | supercontig | sc0003284:10630..11877 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
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