|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042212 ID=TCONS_00042212|Name=TCONS_00042212|organism=Clytia hemisphaerica|type=transcript|length=1864bp
tcctaagtagcttgtttaggtcggcaaagacaATAATTAACGAACTAACA
AATTCAGCTGCTCTATAATTGTGTTGataagttttatgttttataaagag
aatggaatgaggcttgattatcatgtgttatccaatgataacacaattag
attaacctaacaaataatattttttctctttaggtcggctttgccgaccc
aaaacatttcttttgtcggCACGCCGACCTAGAGTGTAAACTATGTCGGC
AAATAAAAGCCGACTTCAGCTCAAGTTACGTCGGCTTTCAGGTCGGCATT
GCCAAATGCCGACCTGGATTCACAGGGCTGCGTTCTTACTCCTCCTTGGT
TGATTTCTGATGTAAACGGGCCCTGGCTTGACCCACGATGGGATTGAACG
TCCTGAAGTGGATTTGCGTGAATATCTGAACATTCTGTCATGAGGTGTTT
CGTTTGTTGTTTTGCATAGCAAGGAGCGGATCGAGTGCAGTGCATCAGGA
AGAACATCTTCCCAGTCAGATTGTTTTAAGTTCCGTGAATGTAACGTGAC
TTGAAGAGCTTTCCATAATGTTCCGTTTAGTTGTTCAACTTGACCATAAC
ATCTTGGGTTATAACGACTTGTTTTCGATGTAGCGATTGATTTGCCAAGT
AAATAAGATTGTGTTTCTTCCGAAAGGAAGTCGGTACCTCGGTCGTTGTG
GACCATTTCGGGCATGCCAAACATTGAAAATAGATTATTGAAACACTGAT
TGATTGTTGAGCTTTTAGTGTCTCAGCAAGGGTAAgcaaacgtaaaaacg
tgaatATTCGTCAATTATTGTAAGAAGGAAACGGTTTCCATATTTTGAAG
GTGGTAGTGGCCCTTTGAAATCAATATTTAGTTTCTGTAAAGGGGCTGTT
AGCATTACTCAACGTACCTTGAGAGTTCAAGAATTTCGGTTTATGGAACA
AGCAAGATTTACAACTGTTAGTGACGGTTTTAACTTGCTCCTGAGTGAAC
GGTAAATTTCTTTGACGTACAAAGTGTGAACTCCAGGATGACAAAGTTGT
TCGTGAAGATTGCGTAATTCTTGCAATGGGTGACAAATGGCAGCAATTCT
GGAAAACGTGTCTGCCGCAGGGTTTTCACTTCCTGGTCAATAGGAGATGT
CATACTTGTACTGGAACAGTTCCATACGCCATCTAGCGATTTTCGCGCTT
TTTTATCTTAGATCTACGTCTGTTATCGAACATAAAACTGATGCTTCTTT
GATCTCTGACAAGAAGAATTTACGACCAATCAAGAAGTGTCTCCAATCTC
GAATAGACTCAACGATGGCAGCTGCTTTTTTTTCTACTGAATGGTGTTTT
ATTTCGTTATGTTTGAGTGTTTGCGAGTAGCAGCGATACAAAAGCCACTA
GCATCTGTTTCTACGACAAACAGTGCTTCCGGATCAATGGGTTGGAGGGT
GGCTGTTTTAAGATCTTCTTTGAGTATATTGAATGCGTCGAGTACTGGCT
GAGGTACTGGGAAGGTTGTGTTTTTATTGAGCGGTCGGATTTTCTCTGAG
AACTTATCGATAAATTTGCTGTAGTAGGAAAACATTCCAATGACTCTTTT
CTGCGATTTAAGATTTGATGGCGGTGGCATATCGATCAAAGGTTGGAGTC
GATGTTGGCCTGGTGATATTGAATCTTTGCTGACGGCGTATCCTAGTAGC
GTGATAAGTGTTGTAGAGATGATATTGTTTTATCATGATTCAATATTAGA
TTGTACTTTTCTATCAtagcaaaaaagtttttaacatTCTGGTCATGTTC
CTTCTTTGTTCGACCTGTGATAGTGATATTATCGACGTAAACAAAGGTAT
CTTTTGAGGTTTTC Run BLAST on NCBI protein sequence of TCONS_00042212-protein >TCONS_00042212-protein ID=TCONS_00042212-protein|Name=TCONS_00042212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MFGMPEMVHNDRGTDFLSEETQSYLLGKSIATSKTSRYNPRCYGQVEQLN
GTLWKALQVTLHSRNLKQSDWEDVLPDALHSIRSLLCKTTNETPHDRMFR
YSRKSTSGRSIPSWVKPGPVYIRNQPRRSKNAAL Run BLAST on NCBI transcript from alignment at sc0003283:6497..8360 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042212 ID=TCONS_00042212|Name=TCONS_00042212|organism=Clytia hemisphaerica|type=transcript|length=1864bp|location=Sequence derived from alignment at sc0003283:6497..8360 (Clytia hemisphaerica)
GAAAACCTCAAAAGATACCTTTGTTTACGTCGATAATATCACTATCACAG
GTCGAACAAAGAAGGAACATGACCAGAatgttaaaaacttttttgctaTG
ATAGAAAAGTACAATCTAATATTGAATCATGATAAAACAATATCATCTCT
ACAACACTTATCACGCTACTAGGATACGCCGTCAGCAAAGATTCAATATC
ACCAGGCCAACATCGACTCCAACCTTTGATCGATATGCCACCGCCATCAA
ATCTTAAATCGCAGAAAAGAGTCATTGGAATGTTTTCCTACTACAGCAAA
TTTATCGATAAGTTCTCAGAGAAAATCCGACCGCTCAATAAAAACACAAC
CTTCCCAGTACCTCAGCCAGTACTCGACGCATTCAATATACTCAAAGAAG
ATCTTAAAACAGCCACCCTCCAACCCATTGATCCGGAAGCACTGTTTGTC
GTAGAAACAGATGCTAGTGGCTTTTGTATCGCTGCTACTCGCAAACACTC
AAACATAACGAAATAAAACACCATTCAGTAGAAAAAAAAGCAGCTGCCAT
CGTTGAGTCTATTCGAGATTGGAGACACTTCTTGATTGGTCGTAAATTCT
TCTTGTCAGAGATCAAAGAAGCATCAGTTTTATGTTCGATAACAGACGTA
GATCTAAGATAAAAAAGCGCGAAAATCGCTAGATGGCGTATGGAACTGTT
CCAGTACAAGTATGACATCTCCTATTGACCAGGAAGTGAAAACCCTGCGG
CAGACACGTTTTCCAGAATTGCTGCCATTTGTCACCCATTGCAAGAATTA
CGCAATCTTCACGAACAACTTTGTCATCCTGGAGTTCACACTTTGTACGT
CAAAGAAATTTACCGTTCACTCAGGAGCAAGTTAAAACCGTCACTAACAG
TTGTAAATCTTGCTTGTTCCATAAACCGAAATTCTTGAACTCTCAAGGTA
CGTTGAGTAATGCTAACAGCCCCTTTACAGAAACTAAATATTGATTTCAA
AGGGCCACTACCACCTTCAAAATATGGAAACCGTTTCCTTCTTACAATAA
TTGACGAATattcacgtttttacgtttgcTTACCCTTGCTGAGACACTAA
AAGCTCAACAATCAATCAGTGTTTCAATAATCTATTTTCAATGTTTGGCA
TGCCCGAAATGGTCCACAACGACCGAGGTACCGACTTCCTTTCGGAAGAA
ACACAATCTTATTTACTTGGCAAATCAATCGCTACATCGAAAACAAGTCG
TTATAACCCAAGATGTTATGGTCAAGTTGAACAACTAAACGGAACATTAT
GGAAAGCTCTTCAAGTCACGTTACATTCACGGAACTTAAAACAATCTGAC
TGGGAAGATGTTCTTCCTGATGCACTGCACTCGATCCGCTCCTTGCTATG
CAAAACAACAAACGAAACACCTCATGACAGAATGTTCAGATATTCACGCA
AATCCACTTCAGGACGTTCAATCCCATCGTGGGTCAAGCCAGGGCCCGTT
TACATCAGAAATCAACCAAGGAGGAGTAAGAACGCAGCCCTGTGAATCCA
GGTCGGCATTTGGCAATGCCGACCTGAAAGCCGACGTAACTTGAGCTGAA
GTCGGCTTTTATTTGCCGACATAGTTTACACTCTAGGTCGGCGTGccgac
aaaagaaatgttttgggtcggcaaagccgacctaaagagaaaaaatatta
tttgttaggttaatctaattgtgttatcattggataacacatgataatca
agcctcattccattctctttataaaacataaaacttatCAACACAATTAT
AGAGCAGCTGAATTTGTTAGTTCGTTAATTATtgtctttgccgacctaaa
caagctacttagga Coding sequence (CDS) from alignment at sc0003283:6497..8360 >TCONS_00042212 ID=TCONS_00042212|Name=TCONS_00042212|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0003283:6497..8360 (Clytia hemisphaerica)
ATGTTTGGCATGCCCGAAATGGTCCACAACGACCGAGGTACCGACTTCCT
TTCGGAAGAAACACAATCTTATTTACTTGGCAAATCAATCGCTACATCGA
AAACAAGTCGTTATAACCCAAGATGTTATGGTCAAGTTGAACAACTAAAC
GGAACATTATGGAAAGCTCTTCAAGTCACGTTACATTCACGGAACTTAAA
ACAATCTGACTGGGAAGATGTTCTTCCTGATGCACTGCACTCGATCCGCT
CCTTGCTATGCAAAACAACAAACGAAACACCTCATGACAGAATGTTCAGA
TATTCACGCAAATCCACTTCAGGACGTTCAATCCCATCGTGGGTCAAGCC
AGGGCCCGTTTACATCAGAAATCAACCAAGGAGGAGTAAGAACGCAGCCC
TGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042212-exon-sc0003283-1491911889:6497..8360 | TCONS_00042212-exon-sc0003283-1491911889:6497..8360 | Clytia hemisphaerica | exon |
| TCONS_00042212-exon-sc0003283-1510915933:6497..8360 | TCONS_00042212-exon-sc0003283-1510915933:6497..8360 | Clytia hemisphaerica | exon |
| TCONS_00042212-exon-sc0003283-1575043694:6497..8360 | TCONS_00042212-exon-sc0003283-1575043694:6497..8360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003283 | supercontig | sc0003283:6497..8360 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
