TCONS_00042207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042207
Unique NameTCONS_00042207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042207 ID=TCONS_00042207|Name=TCONS_00042207|organism=Clytia hemisphaerica|type=transcript|length=833bp
AAAAAAGACGGTCCAAACAACGACAAGGTTGCAtggacaaatctttgaac
aagGCTTGAGAATCTTTCACTCAAACGCTCCACTATAGTTGAGACCAGTG
AATGGCCTATGATATGGCCTACAATATCCATCATTGGATGACAGCGGCTT
CCAGAATAATGGATCTTGAACGCCAAGAAATGGGCGAAGATATGGCCGCC
GTGCACGATAAGTTTATATTGCTCCGACGAAACGGAATGGATGAAATACA
GCACTGGATTGAAGACGTCCATGAGCCGAGAGCTAATTCAAAAGATTTAG
CAAAAGCACCAGCAAATGAGAATCAAATAGGTACGGGACATCATCATCCA
AGAAATACCAGTAAATGGATATTATATACTATCCAAGGCAAGAGAGGGCT
ACCATGTGGTGGACAATGTACAGTATTTTCGACGTTGTCTGTTTGTTTAA
TGTAAGTTTCGTTTTAGTTTATTTAGTTTTAATTTAATTAGTTGTCTGTT
AGTTGGATGGTTAAAATTTTCGTAATAGCGGCAGTAGTAGTAGTAAACAA
GAAGAAAAGAAGCATCACACGGACTTTCGATTGGTTGGCTGGTCGGTTAC
AAAGAACAAGGTTTTTCAATTCTACAAGGAAGAAAATGTTCACCATGTAA
AAGAAGTGATATCGTTGACAATCGTGCGGCTGCTCCATCTTGCGATGGAA
CACTTGGGGAATATACCGTCCCCGACTCGGTGCCAAATACATCTGAACGG
TAGATGTTCAaagtatagcaatgtgccctcccggttattaccataatggc
tttatggcaactcctgcaCTTGGgacacaggat
Run BLAST on NCBI

protein sequence of TCONS_00042207-protein

>TCONS_00042207-protein ID=TCONS_00042207-protein|Name=TCONS_00042207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MAYDMAYNIHHWMTAASRIMDLERQEMGEDMAAVHDKFILLRRNGMDEIQ
HWIEDVHEPRANSKDLAKAPANENQIGTGHHHPRNTSKWILYTIQGKRGL
PCGGQCTVFSTLSVCLM
Run BLAST on NCBI

transcript from alignment at sc0003279:3936..4768

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042207 ID=TCONS_00042207|Name=TCONS_00042207|organism=Clytia hemisphaerica|type=transcript|length=833bp|location=Sequence derived from alignment at sc0003279:3936..4768 (Clytia hemisphaerica)
atcctgtgtcCCAAGtgcaggagttgccataaagccattatggtaataac
cgggagggcacattgctatacttTGAACATCTACCGTTCAGATGTATTTG
GCACCGAGTCGGGGACGGTATATTCCCCAAGTGTTCCATCGCAAGATGGA
GCAGCCGCACGATTGTCAACGATATCACTTCTTTTACATGGTGAACATTT
TCTTCCTTGTAGAATTGAAAAACCTTGTTCTTTGTAACCGACCAGCCAAC
CAATCGAAAGTCCGTGTGATGCTTCTTTTCTTCTTGTTTACTACTACTAC
TGCCGCTATTACGAAAATTTTAACCATCCAACTAACAGACAACTAATTAA
ATTAAAACTAAATAAACTAAAACGAAACTTACATTAAACAAACAGACAAC
GTCGAAAATACTGTACATTGTCCACCACATGGTAGCCCTCTCTTGCCTTG
GATAGTATATAATATCCATTTACTGGTATTTCTTGGATGATGATGTCCCG
TACCTATTTGATTCTCATTTGCTGGTGCTTTTGCTAAATCTTTTGAATTA
GCTCTCGGCTCATGGACGTCTTCAATCCAGTGCTGTATTTCATCCATTCC
GTTTCGTCGGAGCAATATAAACTTATCGTGCACGGCGGCCATATCTTCGC
CCATTTCTTGGCGTTCAAGATCCATTATTCTGGAAGCCGCTGTCATCCAA
TGATGGATATTGTAGGCCATATCATAGGCCATTCACTGGTCTCAACTATA
GTGGAGCGTTTGAGTGAAAGATTCTCAAGCcttgttcaaagatttgtcca
TGCAACCTTGTCGTTGTTTGGACCGTCTTTTTT

Coding sequence (CDS) from alignment at sc0003279:3936..4768

>TCONS_00042207 ID=TCONS_00042207|Name=TCONS_00042207|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0003279:3936..4768 (Clytia hemisphaerica)
TTACATTAAACAAACAGACAACGTCGAAAATACTGTACATTGTCCACCAC
ATGGTAGCCCTCTCTTGCCTTGGATAGTATATAATATCCATTTACTGGTA
TTTCTTGGATGATGATGTCCCGTACCTATTTGATTCTCATTTGCTGGTGC
TTTTGCTAAATCTTTTGAATTAGCTCTCGGCTCATGGACGTCTTCAATCC
AGTGCTGTATTTCATCCATTCCGTTTCGTCGGAGCAATATAAACTTATCG
TGCACGGCGGCCATATCTTCGCCCATTTCTTGGCGTTCAAGATCCATTAT
TCTGGAAGCCGCTGTCATCCAATGATGGATATTGTAGGCCATATCATAGG
CCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026069XLOC_026069Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042207-proteinTCONS_00042207-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042207-exon-sc0003279-1491911889:3936..4768TCONS_00042207-exon-sc0003279-1491911889:3936..4768Clytia hemisphaericaexon
TCONS_00042207-exon-sc0003279-1510915933:3936..4768TCONS_00042207-exon-sc0003279-1510915933:3936..4768Clytia hemisphaericaexon
TCONS_00042207-exon-sc0003279-1575043694:3936..4768TCONS_00042207-exon-sc0003279-1575043694:3936..4768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003279supercontigsc0003279:3936..4768 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0569886	0.22305	0	0.127255	1.31751	0.72927	0.368099	0.483471	0.0965821	0.239952	0	0.0762748	0.190329	0.079196	0.0325099	0.104456	0	0.132421	0	0.063421	0.0566899	0.165891	0	0	0.245616	0.217918	0.0797055	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top