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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042200 ID=TCONS_00042200|Name=TCONS_00042200|organism=Clytia hemisphaerica|type=transcript|length=1392bpRun BLAST on NCBI protein sequence of TCONS_00042200-protein >TCONS_00042200-protein ID=TCONS_00042200-protein|Name=TCONS_00042200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp LVMKLKRVEKKSTVDSVTVSDNIELPGDALGNEQSTIAIVEYKGMAKILGRun BLAST on NCBI transcript from alignment at sc0003273:632..12239- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042200 ID=TCONS_00042200|Name=TCONS_00042200|organism=Clytia hemisphaerica|type=transcript|length=11608bp|location=Sequence derived from alignment at sc0003273:632..12239- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003273:632..12239- >TCONS_00042200 ID=TCONS_00042200|Name=TCONS_00042200|organism=Clytia hemisphaerica|type=CDS|length=18096bp|location=Sequence derived from alignment at sc0003273:632..12239- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00042200 vs. Swiss-Prot (Human)
Match: AGRL2 (Adhesion G protein-coupled receptor L2 OS=Homo sapiens GN=ADGRL2 PE=1 SV=2) HSP 1 Score: 275.018 bits (702), Expect = 7.328e-81 Identity = 159/388 (40.98%), Postives = 231/388 (59.54%), Query Frame = 1
Query: 124 YKGMAKILGVPKNTTLQKQSNI----SKAYLNSQILSISIFPSTKKTF-DKPVVFTQQHRGITNNSVPNCVYWH--ESTFGSHWSDEGCMVNTWNASHVTCHCYHLTNFAILMSVTD-APKQLSEENVLALSLITVIGITISLGALVISFLSFVFIKAIRSLRNTVHKHLCVALFIAEGIFLFGIDKTGHKIGCQVIAASLHYFFLVAFFIMGLEGIVLYMMLVRVYRSMGTSGYGSPKFIALC-WVLPLVVITVNVFIDQNAYGDINGACWLSIENGFIWSFVGPVLLIVGMNFVFLGLTIKVMTEKA---KRRNTAVEEIWFWTKGVCLLLSILGVTWVFGVLYINQDTLFFAYIFAIVNSLQGLSIFVFHCACDPRVRKAYRDFF 1251
Y+ + + L +N T++ ++ S +NS ++S+SI + + + PV+FT H N NC +W+ E T +WS +GC + N + TC C HLTNFAILM+ + A K E L L++IT +GI ISL L I +F F + ++S RNT+HK+LC+ LFIAE IFL GIDKT + I C + A LH+FFL AF M LEG+ LY+MLV V+ S Y K+ + ++ P V+ V+ ID +YG ACWL ++N FIWSF+GPV I+ +N +FL +T+ M + + K ++ +E I W G LL +LG+TW FG+L+IN++T+ AY+F I N+ QG+ IF+FHCA +VRK Y F
Sbjct: 720 YRSLGQFLST-ENATIKLGADFIGRNSTIAVNSHVISVSINKESSRVYLTDPVLFTLPHIDPDNYFNANCSFWNYSERTMMGYWSTQGCKLVDTNKTRTTCACSHLTNFAILMAHREIAYKDGVHE--LLLTVITWVGIVISLVCLAICIFTFCFFRGLQSDRNTIHKNLCINLFIAEFIFLIGIDKTKYAIACPIFAGLLHFFFLAAFAWMCLEGVQLYLMLVEVFESE----YSRKKYYYVAGYLFPATVVGVSAAIDYKSYG-TEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSRLENIKSWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQKKVRKEYGKCF 1099 The following BLAST results are available for this feature:
BLAST of TCONS_00042200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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