TCONS_00042200-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00042200-protein
Unique Name	TCONS_00042200-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	464

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00042200-protein ID=TCONS_00042200-protein|Name=TCONS_00042200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
LVMKLKRVEKKSTVDSVTVSDNIELPGDALGNEQSTIAIVEYKGMAKILG
VPKNTTLQKQSNISKAYLNSQILSISIFPSTKKTFDKPVVFTQQHRGITN
NSVPNCVYWHESTFGSHWSDEGCMVNTWNASHVTCHCYHLTNFAILMSVT
DAPKQLSEENVLALSLITVIGITISLGALVISFLSFVFIKAIRSLRNTVH
KHLCVALFIAEGIFLFGIDKTGHKIGCQVIAASLHYFFLVAFFIMGLEGI
VLYMMLVRVYRSMGTSGYGSPKFIALCWVLPLVVITVNVFIDQNAYGDIN
GACWLSIENGFIWSFVGPVLLIVGMNFVFLGLTIKVMTEKAKRRNTAVEE
IWFWTKGVCLLLSILGVTWVFGVLYINQDTLFFAYIFAIVNSLQGLSIFV
FHCACDPRVRKAYRDFFLCVSVRQKHELMRSMSRTRSTSGSKASMRKSLH
STRGNQLIIGRSKE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_026063	XLOC_026063	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00042200	TCONS_00042200	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR000203	GPS
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 313..338 score: 27.84 coord: 354..374 score: 22.6 coord: 229..252 score: 27.26 coord: 166..190 score: 26.31 coord: 384..405 score: 26.73
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 163..397 e-value: 1.5E-48 score: 165.1
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 102..152 e-value: 1.9E-11 score: 54.0
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 104..146 e-value: 3.2E-12 score: 46.8
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 103..152 score: 15.657
None	No IPR available	GENE3D	1.20.1070.10		coord: 146..443 e-value: 2.2E-35 score: 121.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..450
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 164..406 score: 32.239

Blast

[Close]

BLAST of TCONS_00042200-protein vs. Swiss-Prot (Human)
Match: AGRL2 (Adhesion G protein-coupled receptor L2 OS=Homo sapiens GN=ADGRL2 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 6.647e-84
Identity = 170/436 (38.99%), Postives = 254/436 (58.26%), Query Frame = 0

Query:   42 YKGMAKILGVPKNTTLQKQSNI----SKAYLNSQILSISIFPSTKKTF-DKPVVFTQQHRGITNNSVPNCVYWH--ESTFGSHWSDEGCMVNTWNASHVTCHCYHLTNFAILMSVTD-APKQLSEENVLALSLITVIGITISLGALVISFLSFVFIKAIRSLRNTVHKHLCVALFIAEGIFLFGIDKTGHKIGCQVIAASLHYFFLVAFFIMGLEGIVLYMMLVRVYRSMGTSGYGSPKFIALC-WVLPLVVITVNVFIDQNAYGDINGACWLSIENGFIWSFVGPVLLIVGMNFVFLGLTIKVMTEKA---KRRNTAVEEIWFWTKGVCLLLSILGVTWVFGVLYINQDTLFFAYIFAIVNSLQGLSIFVFHCACDPRVRKAY----RDFFLC--VSVRQKHELMR-SMSRT--RSTSGSKASMRKSLHSTRGNQ 456
            Y+ + + L   +N T++  ++     S   +NS ++S+SI   + + +   PV+FT  H    N    NC +W+  E T   +WS +GC +   N +  TC C HLTNFAILM+  + A K    E  L L++IT +GI ISL  L I   +F F + ++S RNT+HK+LC+ LFIAE IFL GIDKT + I C + A  LH+FFL AF  M LEG+ LY+MLV V+ S     Y   K+  +  ++ P  V+ V+  ID  +YG    ACWL ++N FIWSF+GPV  I+ +N +FL +T+  M + +   K  ++ +E I  W  G   LL +LG+TW FG+L+IN++T+  AY+F I N+ QG+ IF+FHCA   +VRK Y    R  + C  +     H  ++ S +RT  R +SG+++ +R+  + T   Q
Sbjct:  720 YRSLGQFLST-ENATIKLGADFIGRNSTIAVNSHVISVSINKESSRVYLTDPVLFTLPHIDPDNYFNANCSFWNYSERTMMGYWSTQGCKLVDTNKTRTTCACSHLTNFAILMAHREIAYKDGVHE--LLLTVITWVGIVISLVCLAICIFTFCFFRGLQSDRNTIHKNLCINLFIAEFIFLIGIDKTKYAIACPIFAGLLHFFFLAAFAWMCLEGVQLYLMLVEVFESE----YSRKKYYYVAGYLFPATVVGVSAAIDYKSYG-TEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSRLENIKSWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQKKVRKEYGKCFRHSYCCGGLPTESPHSSVKASTTRTSARYSSGTQSRIRRMWNDTVRKQ 1147

The following BLAST results are available for this feature:

BLAST of TCONS_00042200-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00042200-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRL2	6.647e-84	38.99	Adhesion G protein-coupled receptor L2 OS=Homo sap...	[more]

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TCONS_00042200-protein (polypeptide) - C. hemisphaerica