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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042195 ID=TCONS_00042195|Name=TCONS_00042195|organism=Clytia hemisphaerica|type=transcript|length=2112bp
GAAAAATGGAGATTCCAAGATTGGCTAAAAACCATTAAATTCAAGGCATT
CTGGAAAAAAATTCCCTGACTTTTGAGAAACAGCcccttttccaggtttt
ccctgaccgctggGAACTCTGCATAGAGAATCCCATCCCCGAAGATGAAA
ATAGGCATTTCATTACCCAGAAAATGCCCTGTTCCCCAGTGTGTGTTCCC
CCACAGCCAGATTATCCCTTCTTTCCACCATAGTCAAAAGATACCCTTGT
TTGAGTGTGAATTTCTCTTCTGTTTACATCGTATTCCCCCATTatggaaa
atcaaaaacatcTAGCACTGGCCTCACGTACCTACTTACTGTAACCTTAA
TCTAATTGATGATTTGCTACCGTCAAAATGACCAAGGACACAAAAATTAA
TTCAGCGCGCACGCGCATGGCAGACCTCGTGGATGGaagaaatccgccaa
atttttgaaaaagttctttCTTTTCTGCGAGCAAGGAACTTGCGGCTAGC
TGGTTGACCATCAAATCACTTCTCGAGAAAACAAGAAAATCATGCCTTCT
TCTACTGCTCGGTGCATGAGTAAAATGGATACAGATGAACTATTCGAATT
TTTATCACGAAAATATGGTTTGTCGTTGTCAAACAAAGTGAAAGGTTTGT
GGAATTCATGTATTTTTAGTTACATTTCTTACTAGCCACACACCtgtgtt
ttttgtttactgGTTTAGGATTGGGAACTGGTCATTTTCGGCCCCGAAAA
AAAACCAGGCCTGGGAAAAGACCTGTGGTtgtttccattttcaaaccCAA
GCCTgggttttcaacattttttcctgtgagGGTTCCCAGTGGTCAGTGAA
ACCTGGAAAATGCCTAtctcaaaaactttcttttcataTCAATTCTAGAA
TTTGAATTAGCTTTTCCTGCATCCAGTATATCCATGAATTTGGGGTTCAT
CGGGGATGGACTTCAAAGGGATAACAGATGGATTTTGATACTTAGCCTAG
AGATACATTCTATAGTTCTGAGAAAAACCTCAGTTGAGatatttgatttt
gaattttctaaaaatgagactaaaaaaccatctgattatccctttaagtg
gGAGTCGAGGGCATTGtaacttttatgttttttaatTAAGTTTCAAAGTT
CTATCTTAAActttaataaaattaaaaatattctgaactgtcatgaaaaa
ttgtgtGGGTTTTCAATCAAGGTATAGCATGTCGATTAAAACACTCAAAC
TTTAGAAGTCTTTGAATTCATTTGTAGATCTTGGTTTGGATGGTGAGTTG
TTTGATGTTCTCCTTGGTTGTGCGCAGAGGGTGTTTTACTTTGAGAAAAT
GGAGATTACAATCAAACAAATGCTGATTCTGGAACGTGATTTCAACGCAC
CTTGCAATAATCAGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGA
GCACTTGCCTCTCAAAGACACAAATTGAGATTGAGAACGATAAGGAAATC
GACTGATGCTGTCTGGCCACCCAAGTTGGTAGATCTTCCGACATTTGAAA
GCGACAAGTTATCAAACATCATGAAATTGGAAGACATTGTGACGGACCTA
AAATCAAAAAGCCTCTTCGGGCAAATGGACTTGGATGACATTAGAACTAT
GGTCAAGAATAGGATGACCCAGCGACGACGAGAATCAAGGAAAAGAAGCA
TTGACTTTACCAAGGAAAGCTTATCAACAtccaaaattcataaaattaca
ACACCAAAGAAACCAAAAATGCCAATAAGAAAGGGATCTCNtccaaaatt
cataaaattacaacaccaaagaaaccaaaaacGCCAATAAGAAAGGGATC
TCCGAAAAATGGACCAATATCTCCTATAAGAACGAAATCTCCAAAAACCA
GACCAACATCAgcaaagaaatcagaaaaagtaaataaattcatttatttg
GTAACAGCTTGATCTAAGGGCTGCACTTCTTAAATTAAATAGTTTTTTCT
CAagttttaggggtattttatgCTTTTTCAGGAGATTCAACAATTAACTT
TTCTCCTATTGTCAACAGATTTCCTTAAAATCCTTGAAATCTAGCAAAGA
ACGAATTCAAAA Run BLAST on NCBI transcript from alignment at sc0003271:10703..13502+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042195 ID=TCONS_00042195|Name=TCONS_00042195|organism=Clytia hemisphaerica|type=transcript|length=2800bp|location=Sequence derived from alignment at sc0003271:10703..13502+ (Clytia hemisphaerica)
GAAAAATGGAGATTCCAAGATTGGCTAAAAACCATTAAATTCAAGGCATT
CTGGAAAAAAATTCCCTGACTTTTGAGAAACAGCcccttttccaggtttt
ccctgaccgctggGAACTCTGCATAGAGAATCCCATCCCCGAAGATGAAA
ATAGGCATTTCATTACCCAGAAAATGCCCTGTTCCCCAGTGTGTGTTCCC
CCACAGCCAGATTATCCCTTCTTTCCACCATAGTCAAAAGATACCCTTGT
TTGAGTGTGAATTTCTCTTCTGTTTACATCGTATTCCCCCATTatggaaa
atcaaaaacatcTAGCACTGGCCTCACGTACCTACTTACTGTAACCTTAA
TCTAATTGATGATTTGCTACCGTCAAAATGACCAAGGACACAAAAATTAA
TTCAGCGCGCACGCGCATGGCAGACCTCGTGGATGGaagaaatccgccaa
atttttgaaaaagttctttCTTTTCTGCGAGCAAGGAACTTGCGGCTAGC
TGGTTGACCATCAAATCACTTCTCGAGAAAACAAGAAAATCATGCCTTCT
TCTACTGCTCGGTGCATGAGTAAAATGGATACAGATGAACTATTCGAATT
TTTATCACGAAAATATGGTTTGTCGTTGTCAAACAAAGTGAAAGGTTTGT
GGAATTCATGTATTTTTAGTTACATTTCTTACTAGCCACACACCtgtgtt
ttttgtttactgGTTTAGGATTGGGAACTGGTCATTTTCGGCCCCGAAAA
AAAACCAGGCCTGGGAAAAGACCTGTGGTtgtttccattttcaaaccCAA
GCCTgggttttcaacattttttcctgtgagGGTTCCCAGTGGTCAGTGAA
ACCTGGAAAATGCCTAtctcaaaaactttcttttcataTCAATTCTAGAA
TTTGAATTAGCTTTTCCTGCATCCAGTATATCCATGAATTTGGGGTTCAT
CGGGGATGGACTTCAAAGGGATAACAGATGGATTTTGATACTTAGCCTAG
AGATACATTCTATAGTTCTGAGAAAAACCTCAGTTGAGatatttgatttt
gaattttctaaaaatgagactaaaaaaccatctgattatccctttaagtg
gGAGTCGAGGGCATTGtaacttttatgttttttaatTAAGTTTCAAAGTT
CTATCTTAAActttaataaaattaaaaatattctgaactgtcatgaaaaa
ttgtgtGGGTTTTCAATCAAGGTATAGCATGTCGATTAAAACACTCAAAC
TTTAGAAGTCTTTGAATTCATTTGTAGATCTTGGTTTGGATGGTGAGTTG
TTTGATGTTCTCCTTGGTTGTGCGCAGAGGGTGTTTTACTTTGAGAAAAT
GGAGATTACAATCAAACAAATGCTGATTCTGGAACGTGATTTCAACGCAC
CTTGCAATAATCAGTTAATGACTGGAGGGCAAATGACTCCTTCGGGGAGA
GCACTTGCCTCTCAAAGACACAAATTGAGGTAAGAATTCGGAATCTAATA
AATATTACTTAAGTTCTTTGTGCTTGATAAACCCTGTGCAGCCTCTAACA
GGTTATCATTAATCTAGCAGGCCTAGTTTGTGGTTTTGAGAGGGGTAAAT
CACACCAAGAAATAGTGTGAAGGCTCTTCAATTTTTGAGAGGTTTGAGAT
TGAGGGTCTACAAGTCTTATTTTATATTTTCAATTTGTTTAAACAGATTG
AGAACGATAAGGAAATCGACTGATGCTGTCTGGCCACCCAAGTTGGTAGA
TCTTCCGACATTTGAAAGCGACAAGTTATCAAACATCATGAAATTGGAAG
ACATTGTGACGGACCTAAAATCAAAAAGCCTCTTCGGGCAAATGGACTTG
GATGACATTAGAACTATGGTCAAGAATAGGATGACCCAGCGACGACGAGA
ATCAAGGAAAAGAAGCATTGACTTTACCAAGGTTAGATACTGTTTTCATT
TTACAGAATTCACACAGTGTCGTTTTTATTTCCCCTGTGTaacatctggt
ggctgtcggcggagccggaagtgagggagtctatccccttttctatttgc
gctagacctgggtgATCGAATGCTGAGGNcatctggtggctgtcggcgga
gccggaagtgagggagtctatccccttttctatttgcgctagacctgggt
gatcgaatgctgaggtggagtgcCACACCTACTCTCTTCTCCCAGTTACT
TACCgcttagatcagattacccaatctaagctactcattcgcTGAGTTGC
CGGTGACctgggatcgaacccacaaccctaggattgtaaggcgaatgccc
TAACGACCAAGCTACCCGGCCTCAAATGTATATTGATGTATATTCTAGTG
AAATCACTTTACAAAGAGCCTCAATACAGTCATCTATTCTCATTTTTCTT
AGGAAAGCTTATCAACAtccaaaattcataaaattacaACACCAAAGAAA
CCAAAAATGCCAATAAGAAAGGGATCTCNtccaaaattcataaaattaca
acaccaaagaaaccaaaaacGCCAATAAGAAAGGGATCTCCGAAAAATGG
ACCAATATCTCCTATAAGAACGAAATCTCCAAAAACCAGACCAACATCAg
caaagaaatcagaaaaagtaaataaattcatttatttgGTAACAGCTTGA
TCTAAGGGCTGCACTTCTTAAATTAAATAGTTTTTTCTCAagttttaggg
gtattttatgCTTTTTCAGGAGATTCAACAATTAACTTTTCTCCTATTGT
CAACAGATTTCCTTAAAATCCTTGAAATCTAGCAAAGAACGAATTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042195-exon-sc0003271-1491911889:10703..12181 | TCONS_00042195-exon-sc0003271-1491911889:10703..12181 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1510915933:10703..12181 | TCONS_00042195-exon-sc0003271-1510915933:10703..12181 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1575043694:10703..12181 | TCONS_00042195-exon-sc0003271-1575043694:10703..12181 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1491911889:12399..12633 | TCONS_00042195-exon-sc0003271-1491911889:12399..12633 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1510915933:12399..12633 | TCONS_00042195-exon-sc0003271-1510915933:12399..12633 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1575043694:12399..12633 | TCONS_00042195-exon-sc0003271-1575043694:12399..12633 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1491911889:13105..13502 | TCONS_00042195-exon-sc0003271-1491911889:13105..13502 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1510915933:13105..13502 | TCONS_00042195-exon-sc0003271-1510915933:13105..13502 | Clytia hemisphaerica | exon |
| TCONS_00042195-exon-sc0003271-1575043694:13105..13502 | TCONS_00042195-exon-sc0003271-1575043694:13105..13502 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003271 | supercontig | sc0003271:10703..13502 + |
Blast
The following BLAST results are available for this feature:
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