TCONS_00042189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042189
Unique NameTCONS_00042189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042189 ID=TCONS_00042189|Name=TCONS_00042189|organism=Clytia hemisphaerica|type=transcript|length=260bp
CTCTGTACAAGGTGCAAAACTACTCAATGCAATGCCAAAGAGCATAAGAA
ACttaaaaaacgcttcaactgaaaaatttaaaaatgcccTTGACACTCAC
TTAAAGTCGATCCCGGATGAACCCCAAATTCATGGATATACTGGGTGCAG
GAGagctaattcaaattcaatacttgacatgaaaaatatctgctgAGATT
CTTTTTCCCTCGACAGATTGATCAAACAGAGGCGTGGTTCATCAAGAATC
TTACCTGAGC
Run BLAST on NCBI

transcript from alignment at sc0003267:787..1046

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042189 ID=TCONS_00042189|Name=TCONS_00042189|organism=Clytia hemisphaerica|type=transcript|length=260bp|location=Sequence derived from alignment at sc0003267:787..1046 (Clytia hemisphaerica)
GCTCAGGTAAGATTCTTGATGAACCACGCCTCTGTTTGATCAATCTGTCG
AGGGAAAAAGAATCTcagcagatatttttcatgtcaagtattgaatttga
attagctCTCCTGCACCCAGTATATCCATGAATTTGGGGTTCATCCGGGA
TCGACTTTAAGTGAGTGTCAAgggcatttttaaatttttcagttgaagcg
ttttttaaGTTTCTTATGCTCTTTGGCATTGCATTGAGTAGTTTTGCACC
TTGTACAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026055XLOC_026055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042189-exon-sc0003267-1491911889:787..1046TCONS_00042189-exon-sc0003267-1491911889:787..1046Clytia hemisphaericaexon
TCONS_00042189-exon-sc0003267-1510915933:787..1046TCONS_00042189-exon-sc0003267-1510915933:787..1046Clytia hemisphaericaexon
TCONS_00042189-exon-sc0003267-1575043694:787..1046TCONS_00042189-exon-sc0003267-1575043694:787..1046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003267supercontigsc0003267:787..1046 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.96944	1.28034	0	1.45441	4.41863	3.7591	2.53203	0.790152	0.553204	0	0	0	0.522944	0.514225	0	1.60016	0.492818	0.505122	0	0	0.634723	0.928787	0	0	0	1.2581	0.900166	0	0.728643	1.48474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top