TCONS_00042182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042182
Unique NameTCONS_00042182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042182 ID=TCONS_00042182|Name=TCONS_00042182|organism=Clytia hemisphaerica|type=transcript|length=1119bp
ACGAGTGTAAAGACATGGAAGAATATCATAGCGAGACATTGGAAAGCAAA
TTTTTTGCTCCCTTTGCAAACATACCTTACGTTTCTAATGTACATTACGC
TCGGCCTTCCGATGTTTTTATACCGAAagGTACGAATTGGTGCGAAAGGA
TTGTTTGGGCACTCCGTAATGATATCAAATTGAACATTCAACATGCACCC
CCTGTATCAGTTTTCGACATTGTTATGGGTATAGGAGATTTTGATAGTGA
CAACAACAAAGCTCACGATGAGATTTTTTCGTCCATGAAACGACCACGTG
TTATCAAAATGCATCTTACATATGAATTATTACCAAGACAGTTTCAACAA
AAGCAACCTAAGATGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCA
GTCCCTTCACAGTCACTTCTATACACTCTACGATGACTTTTCTGAATCAT
TACAAGATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTGGT
CCGTTTTTTAAACATGTTTTGGGATACTGGAAACGACGTTCttatgaaaa
tatatttatcattttttacgaagaaatgaaaaaagatttatccggTCATA
TTAAGAAGATTGCTGATTTCTTAGACATTGAAATTTTAGATGAAGAAGTG
TCAAAACTGGCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAG
CAAATGATTCCCTTTCATGCAAAGCAGGAAGGTCATAGTTCAACAGTCGA
AGCAGCTCACAAAGGAAAGACAATGTTTAACAAGGGACAAGCTGGATCGT
GGAAGGTTCTATTTACACCAGCGATGACAAAACAAATGGAAGAATGGGAA
TCAAAATGGTTGAGAGATACTGATCTTGAACTTATTTATGAATAGTACTG
GAGTATCGAAACATGTAAAATAAGAGttagataaaattttgaaacgaGTA
AAATGaaacatacacgcttttttttacaagaatagtgtactttgaatgag
ggtcaagtattcttaagaaattggcaaaattgagggtgaaatcttcttaa
cgtattcttgacttttttacaaacatgagaaaatcaatttgagggtttgg
acttttgagtgaacatttg
Run BLAST on NCBI

transcript from alignment at sc0003263:4147..10180+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042182 ID=TCONS_00042182|Name=TCONS_00042182|organism=Clytia hemisphaerica|type=transcript|length=6034bp|location=Sequence derived from alignment at sc0003263:4147..10180+ (Clytia hemisphaerica)
ACGAGTGTAAAGACATGGAAGAATATCATAGCGAGACATTGGAAAGCAAA
TTTTTTGCTCCCTTTGCAAACATACCTTACGTTTCTAATGTACATTACGC
TCGGCCTTCCGATGTTTTTATACCGAAaggttattttcaaaacattgaag
agattaaaaatttcaaattttttgaagatgaTACAGTTATATGTGGATTT
CTTAAAACAGGTAGCGTTAGTATTGAACGTTTTTTTTGTTCGCACATGTG
TATATTGTGCCTTgatatttcgattttttatACCTTCTGGACGTATAATT
AACCCCTTGACAATATAATCTTCTACCCCATTTGTACAGTGTTTTGTTCG
TGAAGAGTCATATCATAtcattttttgccaatttcgatcATTTCCGCGAA
AAATAGAAATCCAATTCTCGgcgaaaatttcaaagaaaaatgaaagaaat
cgaaaaaagaGACTGATTGAGCGATTCAGAAAAAGtcttattttgagaaa
atttatcCGCTGAAGGAACTCTGAAGCTGTTGGGTTGTCGAGGTAGGTAG
GAAgtataccttaagagaagaaattttggcgggaagaaattttagcgaat
gaGCCCATTCGCCAATTTTAGTgcaatttggcggaatttattttgccgat
ttaaaaaaaattctaaatttggcgagacataattttggcgaacgacccat
tttttgttgaatattaaGCTTAAAAAGGATGAAAAAGGGTTTCTagtaaa
agaaatttaaatttggcgggaattaatTTAGGCGAATGGCCCATATATCT
AAATTTAGCGGGAAGAAATTtcggcgaatttggcgaatttttgtggcaat
tcgccaaattcgccaaaatttcttctcttaaggtaagtTCAGGTTCTCGT
TTTGAAGTTCACACTTCTTAGACAGTTTTTGATGAAAGACTTGAACCTGG
AGACTCTCTATAGAAACGCGTTATTGTAATGATGTTTTATCGATAATCTT
TAGGTACGAATTGGTGCGAAAGGATTGTTTGGGCACTCCGTAATGATATC
AAATTGAACATTCAACATGCACCCCCTGTATCAGTTTTCGAGTAAGTGaa
ttttagagtccacaaagccttaaaatgttcttaacttgttcttaagattt
tggccatcgaagccttatgttcttctaTACTTATTTGTTTtcgatggttt
gagacagattcaaatgTAGCCCAATCGGCGACGCATCGCTATGTCTTGTC
TCCGGTGGagaaaataccctacaatttccgccctactggaaaattaaaat
ttttatttaggttttttattcgttttttttttcgtcgtggggaaatttcg
tcacctagaggcattttcgtcactttatTATCTATTATAAGATTTTGAAg
cagatttagaaaaattttccgaaaaaataattttagatacgccatctacc
gcaaaaattttttcaaaatgttttttctccgccgaaactaagctcttcag
tcttcattttcttcttcatcaaattttttcattgcgattcttaaattttc
agactcaaggataattggcctaacagttttgtgggctacatcaagtagaa
ctttacattttgtaagtggcaaatataaaaaattcactatggtcagagcc
ctgtTTTCACTTCACTTCACTTCGGCTACCCGAAGTGAAACAGTACGTGT
TACCACCCCCTAACTTAGCTTGTTGTGTTTGTTAGGCAAAAGAACTCGTT
TGAAAAGAAAGTGATTTTATTTGTTCTGTTAAGAAACATCGCTGGAAACG
TATACAATGGAAAACTACGATAGAAATCCTTTTTTtctgttgaaataaaa
aaaaatttggtcgGGGATTAAAAAaccgggtaaaagttttgggcGGGGGG
AAAAAtcaggtaaaagttttggttggggataaaaaaaatcgggtaaaact
TTTGGTCGGGTgttaaaatatcaaagaaataattcgtcgggggaaaattt
cgtcaccccttcaaaattttcgtcactttccccagACATTTCTCCCCCGA
TAAGGTACGCAAAGTTCCTAGCCTCCCGCTAAAAACCCTAGATTATACCA
CCAGGAGGTAGGAACCAAAAactgagaacaatagaattcccaaTCCCTTT
TTGGATTTCAATAGATAGGGGCTGTGAGACACGGGTGGTGTAAAGTGAAA
AGAACAAAATGTTTGAAACAGGTGCTGCAAAAACCAAATACatgtatttt
cttttataagcataacgtttataagcatacgcaggctcagttttcggcac
ctaaacaatggctctattgttttagaacaatagaatgctaagcataatgc
gagcctgatataggggcagacacttgcttataaaaaaaaaacatgtacac
aaATGGTAACGAAAGGATATGTTCTACATAGTTGCTATTGTTGCCACCCT
CTCATTCGATGTTCAAGGGgtcaagaattttcttcaaatcagagaaatat
ttgaattagagagtACTTTCCACCAGAGGGAACCAATGGTTTAGTTCCTA
TTAcagataaattaaaattaaaaaggttCGAATTAAAACAACAATAGGAA
AATATTAGATAGAGAGTTGCCCTGGGTTCAGGAAAATTTCGTAATCGAAA
CTTTCCAGAAGTTTCCCATACATCAAGCACTGTCATATCAAAGGATTATC
ATCTTTCAATATCACAGCATTGTTATGGGTATAGGAGATTTTGATAGTGA
CAACAACAAAGCTCACGATGAGATTTTTTCGTCCATGAAACGACCACGTG
TTATCAAAATGCATCTTACATATGAATTATTACCAAGACAGTTTCAACAA
AAGCAACCTAAGGTATTTATACTCTTTCTCACCTGCAAACATCAATAGAA
TCTGATAGAGTCATTTATAAGTAAGGCTAAAATAAGGCGATGTTGGAAAT
TTTCATACTTGACAAAATATAACAAACAAAATAGATCAACAGACGATATT
GGcttcacatgaaaactcagatgaCCCACCCAATTTCTCCACGATGCTTT
GTGTGGAAAAAATTTCAtcgtgaacttttttccgcgcaaagcattgtggg
taattttcgggggtcaaatctgagttagTTTCAccttaagccgatatcgt
ctacaTTACATACTAGGCCAGTCAATCCCAAGGTGCATCATGTTTCGTCG
GAAATCAAGAATTTCCATAGAGAACGGGacttaccgtgaaaagcacaggc
cgatatcatatattgacctgtgccgaccaatcgagattcAGCACGCAATc
aaaatgaatctatgtttgcTTTTTCATTTCtgtcatttgttttccttttt
tctgcagagacAGCTTTTCCCATAAATTATGctcgcgcatcgaaattatc
aaaatgcgcgcgaaagtactactaagtaatacgccgaaaactggccaatc
aggccgaacccgcattgcagggaaaaatttCCCTGCAGgtgagttacctg
cgccaagcgttaaacaagcagcaaaaatatcataaactagactgtgaaca
aagtttaacgcttggattcccaggctaacttAACCTGTGATAATCAGGGT
AAACGGGACTGTTTACATACAAGTCAGATTACAGAAACCCAAATATTCGA
CGCAAATCATCGGGAAATATCTTTCTTTATATCACCAATTAGATGATTTA
CATGCTTCGAAACCCAAGAGATGTTTGCCAGTCCCTTCACAGTCACTTCT
ATACACTCTACGATGACTTTTCTGAATCATTACAAGATGTTGTTAATCTC
ATGACCGATGATGCTGGATTCTATTCTGGTCCGTTTTTTAAACATGTTTT
GGGATACTGGAAACGACGTTCttatgaaaatatatttatcattttttacg
aagaaatgaaaaaagatttatccggTCATATTAAGAAGATTGCTGATTTC
TTAGACATTGAAATTTTAGATGAAGAAGTGTCAAAACTGGCAAACATTTT
TCCTTTGATTCGATGAAACGAAAAGCAGAGCAAATGATTCCCTTTCATGC
AAAGCAGGTCAGTGTGGAAcgattttttaaaatctttgctcAAATTTCAG
ATGGAAAAACAATTTAGCACAATCGAATCCTAATCTAATCAGTATAATAA
GGCGAAGTGGAGTACTCTTAGGGTGTTTATTTGGAACCAAAGAGTAGATA
TCCATAATCGTTTCAATGCAGGAGGTAAGGTTTCGATTCCCCTTAATCTT
TAAATTAATTGAATACCCCTTAATCCTATTTATGCCGACATTTCTCCACT
TTCATAATACCAGGGGGTATTTTACACCACCctgaataacttttgatcta
attgaaatttttatacTAAATTTGGAACAGATGTTGCTTATCATGGAAAg
attaaaagattttgttaaagTCAGATAGTTTTGTGtgctttgaaaaatgt
aaaagagtGCAGGGATGGTGTGGTGTAAAATAcaccctgataaaaatagg
gtgtATTTTACACGTCAATACGTCATGTGTCAATTTGAGGAGAAATAGGT
ATGACAACTCGGATACCGAAGAAGGGAGGAGACCTCGATATTTTTCAGGT
TCACCCTtgtactaaagtctattcacgataagtgtgcactcttttttctt
ttacctataactttcgaaggaattcttcaatctttatagatttggtatca
ttggaaagatattagtgagtggaacaaattgaaataaaaatatctttaaa
aaaattataaaaatgaagatgaaaatgaagaagaaaaaaatgaagatctt
gtagaaaagtgctataactatcattttcactgaattgAAACCTTggttat
cgaacgtcatcactgtgaaaaaatttctcaaaaataatcattcagtcaaa
agatatcaaacaaagttataagctaattgacgtctaaaaacNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatcaaagaatctctcca
gtgaaaatgatagttatagcacttttctacaagatcttcatttttttctt
cttcattttcatcttcatttttagaattattttaaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtctctccaacgataccaaatgtataaagattgaagaattcc
ttcaaaagttataggtaaaagaaaaaagagtgcacacttatcgtgaatag
actttaaatcaCTTTCTTTTTACAAATTGGACGATTTTCCAGGAAGGTCA
TAGTTCAACAGTCGAAGCAGCTCACAAAGGAAAGACAATGTTTAACAAGG
GACAAGCTGGATCGTGGAAGGTTCTATTTACACCAGCGATGACAAAACAA
ATGGAAGAATGGGAATCAAAATGGTTGAGAGATACTGATCTTGAACTTAT
TTATGAATAGTACTGGAGTATCGAAACATGTAAAATAAGAGttagataaa
attttgaaacgaGTAAAATGaaacatacacgcttttttttacaagaatag
tgtactttgaatgagggtcaagtattcttaagaaattggcaaaattgagg
gtgaaatcttcttaacgtattcttgacttttttacaaacatgagaaaatc
aatttgagggtttggacttttgagtgaacatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026048XLOC_026048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042182-exon-sc0003263-1491911889:4147..4275TCONS_00042182-exon-sc0003263-1491911889:4147..4275Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1510915933:4147..4275TCONS_00042182-exon-sc0003263-1510915933:4147..4275Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1575043694:4147..4275TCONS_00042182-exon-sc0003263-1575043694:4147..4275Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1491911889:5150..5237TCONS_00042182-exon-sc0003263-1491911889:5150..5237Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1510915933:5150..5237TCONS_00042182-exon-sc0003263-1510915933:5150..5237Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1575043694:5150..5237TCONS_00042182-exon-sc0003263-1575043694:5150..5237Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1491911889:6864..7008TCONS_00042182-exon-sc0003263-1491911889:6864..7008Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1510915933:6864..7008TCONS_00042182-exon-sc0003263-1510915933:6864..7008Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1575043694:6864..7008TCONS_00042182-exon-sc0003263-1575043694:6864..7008Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1491911889:7839..8203TCONS_00042182-exon-sc0003263-1491911889:7839..8203Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1510915933:7839..8203TCONS_00042182-exon-sc0003263-1510915933:7839..8203Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1575043694:7839..8203TCONS_00042182-exon-sc0003263-1575043694:7839..8203Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1491911889:9789..10180TCONS_00042182-exon-sc0003263-1491911889:9789..10180Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1510915933:9789..10180TCONS_00042182-exon-sc0003263-1510915933:9789..10180Clytia hemisphaericaexon
TCONS_00042182-exon-sc0003263-1575043694:9789..10180TCONS_00042182-exon-sc0003263-1575043694:9789..10180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003263supercontigsc0003263:4147..10180 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.40763e-07	1.13417	1.0657	0.484721	0.233419	0	0	0.316911	1.36903	0	0	0.632402	0.129644	0.0873949	0.208563	0.174507	0.164517	0.048992	0	0	0.505649	0.443024	7.78388	2.70087	1.86664	6.67345	41.6989	66.3382	0	0.497712
Blast
[Close]
BLAST of TCONS_00042182 vs. Swiss-Prot (Human)
Match: ST1C4 (Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.590e-17
Identity = 61/196 (31.12%), Postives = 99/196 (50.51%), Query Frame = 3 
Query:   99 ARPSDVFI---PK-GTNWCERIVWALRNDIKL-NIQHAPPVSVFDIV-MGIGDFDSDNNKAHDEIFSSMKRPRVIKMHLTYELLPRQFQQKQPKMIYMLRNPRDVCQSLHSHFYTLYDDFSESLQDVVNLMTDDAGFYS-GPFFKHVLGYWKRRSYENIFIIFYEEMKKDLSGHIKKIADFLDIEILDEEVSKLAN 665
            A+P D+ I   PK GT W + IV  ++N+  +   + AP    F  + M I    S   +AH     +M  PR++K HL + LLP    +K  K+IY+ RNP+D   S + HF  +               T  AG    G + +HV G+W+ +    I  +FYE+MKK+    I+K+A+F+  ++ D+ + K+ +
Sbjct:   43 AKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAH-----AMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYY-HFQRMNKALPAPGTWEEYFETFLAGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVH 232
The following BLAST results are available for this feature:
BLAST of TCONS_00042182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1C46.590e-1731.12Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE... [more]
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