TCONS_00042177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042177
Unique NameTCONS_00042177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042177 ID=TCONS_00042177|Name=TCONS_00042177|organism=Clytia hemisphaerica|type=transcript|length=1333bp
GTTTGCTGTAATCTTTACAAACGTAATTTTGGTTACAAGTGGAGTAGATT
CGCCAATTCAACAATGAAACACCAGCAAAATCATTATGTCTCCTTATTGG
TGATTTTTTACATCTTATGTTTTCGGACAAATTTGTGTGTTGCGCGAGAA
AGAAGTTTTATTTCTCCTAAAGACAGATTAAAAGATCCTATTCGAGTAAT
TCAATTTGCAAATAAAACTGCGACACATATTGTCGCTGAGAACGGCAATG
ACGTAACACTTGATTGTCGGGTTTCTGGAAATATGAATGCAACTCACTGG
TGGTTTAAAATCAATCCTGAAAATGGAAAGCATACATTTTTGTCATCATC
ATCCATTTTAACGTTGAAGGATTTGCGATCGTCTGATTCTGGTCAATATA
CGTGCATTGTGAATGCGCAGTCAGCGAAAAATCAACGAAATTTCACTGTA
AATGTACCATCATATCGCTATACAATCAAAATTCCACTCCTATTGAAACA
ACTCGGCCCAAATCCGAACGTTAACAGTCAAACAAGTATTGATGTGGGGG
AGCATGTCAGGCTTCAATGTCACGAAGAATCATCTAAACAATCATATTAT
GGCTACAGAGTCGAATTTCGCTGGATTCGTTGGAAAAAGAACTTTAACCC
AACGATTCTTCAAAATATTGGGCGTGACATTATGAAAAATAAACTCGACT
TTACTAAATACCCCTTTGTTGAGGAGATCCCATCTTCAGAATACAAAGTG
TTTATCCATATGCGATACGATAATAATGTTAGATTCGGCAGACTTCACAG
CTCCGATCTTACCTTGTCTCAAGTTACGGAGGATGATCAGGGCTATTACT
CATGTGTCGCGAGTAATTcgtttggttttgattttttgacaaGATATGTT
GCTGTCAACAAAGtacatgataTTGAATCTCCAAGGATCAACATTCTGAA
AGTTGTTCTGATCGCTTTAGGTGCTGGGCTAATCTTTGGGATAAGCATCA
TATGTACCGTATGTAGATTAATTAAACTTAGAGGTGATAAGCAGAGAGCT
CTTCCAGTAGAAGAAATTGGATTGGTTGAAATCCATCGAAATGATCAGCA
AGGGGTTCGACACGAAGAAAATGTCTATATAATAGACTCCTCTCCTGCTA
TTGTGCAGGCTAAAAAGAGGAATCCTAAGAGAACGAATGAGGAATTGTAC
CACGACCCTCAAGGTATTATCCATTGGTGCTTGACACATTTTTTCATATA
AGCGACTCCAATTTCGGGTCATTTTaactcattttctgaaaatttcactc
TCTGATATTATATCATATTCATGCTTATTGGGC
Run BLAST on NCBI

protein sequence of TCONS_00042177-protein

>TCONS_00042177-protein ID=TCONS_00042177-protein|Name=TCONS_00042177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
VCCNLYKRNFGYKWSRFANSTMKHQQNHYVSLLVIFYILCFRTNLCVARE
RSFISPKDRLKDPIRVIQFANKTATHIVAENGNDVTLDCRVSGNMNATHW
WFKINPENGKHTFLSSSSILTLKDLRSSDSGQYTCIVNAQSAKNQRNFTV
NVPSYRYTIKIPLLLKQLGPNPNVNSQTSIDVGEHVRLQCHEESSKQSYY
GYRVEFRWIRWKKNFNPTILQNIGRDIMKNKLDFTKYPFVEEIPSSEYKV
FIHMRYDNNVRFGRLHSSDLTLSQVTEDDQGYYSCVASNSFGFDFLTRYV
AVNKVHDIESPRINILKVVLIALGAGLIFGISIICTVCRLIKLRGDKQRA
LPVEEIGLVEIHRNDQQGVRHEENVYIIDSSPAIVQAKKRNPKRTNEELY
HDPQGIIHWCLTHFFI
Run BLAST on NCBI

transcript from alignment at sc0003262:10527..13032+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042177 ID=TCONS_00042177|Name=TCONS_00042177|organism=Clytia hemisphaerica|type=transcript|length=2506bp|location=Sequence derived from alignment at sc0003262:10527..13032+ (Clytia hemisphaerica)
GTTTGCTGTAATCTTTACAAACGTAATTTTGGTTACAAGTGGAGTAGATT
CGCCAATTCAACAATGAAACACCAGCAAAATCATTATGTCTCCTTATTGG
TGATTTTTTACATCTTATGTTTTCGGACAAATTTGTGTGTTGCGCGAGAA
AGAAGTTTTATTTCTCCTAAAGACAGATTAAAAGATCCTATTCGAGTAAT
TCAATTTGCAAATAAAACTGCGACACATATTGTCGCTGAGAACGGCAATG
ACGTAACACTTGATTGTCGGGTTTCTGGAAATATGAATGCAACTCACTGG
TGGTTTAAAATCAATCCTGAAAATGGAAAGCATACATTTTTGTCATCATC
ATCCATTTTAACGTTGAAGGATTTGCGATCGTCTGATTCTGGTCAATATA
CGTGCATTGTGAATGCGCAGTCAGCGAAAAATCAACGAAATTTCACTGTA
AATGGTAAGTACTTACCTTACTTTAGCTCGTAAGACCAAAATGTTTGTTC
AATTCGAACTTTGAGCTATCCGCATAGTTAACGTACGCAGCGAGGAGGGT
AGTGAAGAGGGAAATGGTCTATTTTTTTGAATGCCGTCATTTTTCAAAGT
CAATTTAACAAAGATTATTTATgcattatttttgtttaaattagTACCAT
CATATCGCTATACAATCAAAATTCCACTCCTATTGAAACAACTCGGCCCA
AATCCGAACGTTAACAGTCAAACAAGTATTGATGTGGGGGAGCATGTCAG
GCTTCAATGTCACGAAGAATCATCTAAACAATCATATTATGGCTACAGAG
TCGAATTTCGCTGGATTCGTTGGAAAAAGAACTTTAACCCAACGATTCTT
CAAAATATTGGGCGTGACATTATGAAAAATAAACTCGACTTTACTAAATA
CCCCTTTGTTGAGGAGATCCCATCTTCAGAATACAAAGTGTTTATCCATA
TGCGATACGATAATAATGTTAGATTCGGCAGACTTCACAGCTCCGATCTT
ACCTTGTCTCAAGTTACGGAGGATGATCAGGGCTATTACTCATGTGTCGC
GAGTAATTcgtttggttttgattttttgacaaGATATGTTGCTGTCAACA
AAGGTGAATtagtttttcattaaaaatagtttttattaGTTGTCTTTcaa
tgatattcatgatgtaatcttttttaCGGAAATGCCCTGTGTTTTTTCTG
CGTAAAAGATTACATCTTGAGAATATCATTGCTTTCAAAGttaatagcgc
tccgcaacacatacgtcataattattatttttcactttttttgacatttg
tacgagttgcaatcccacaattcaatgcagttgaattaaagatacgtgca
agttgttagatatcttttgtcaaatggtGCAATTAACGTGtaaaagagat
taacgcaaaggttgatgggattggaactcgtacaaacacatcgagagtaa
tgattatgtcaaaaataaaatctatttttagattcagcgcggtgcgctat
aGGAATAAACTTGTCGTGTATATCAAGAATGACACCCTATATTTACGGAC
CCTGCATTGATCTCACCGCGGCTTCtcatagcctgggaatccatgctatg
atttcttctttgataaactgatggtgaaatgtatagcatggtgagagttt
gaatttctcagatcctaataacggttgaaaacatagccaatcaaattttg
ttattcttttactggtcacactttcttagagaaagcgcaacttccgaaat
ttggtttttattttagtaagtgaggacagcgctaaattcgaatttccaac
tgtaaattttttgagccAATCAGAGCGCGGAAAAAATatgagtccaatat
tggactcacagctcgaacccgtcttgtgtacatcaaattataaaaaaaca
catgacgggtctcctgtctaggcTTCTCACTGCTTCCATAAACGGTTGCA
ACATCCACACCATACATGCCCTTCCCACCATTATCATCCCATGCCCACTA
TTCTATCGGACCTTAAAGTCATCTATATAGCCACTGCGTGTATGTTTTTC
TAGTGAAAATTAAAgattaatttttctatttttcagtacatgataTTGAA
TCTCCAAGGATCAACATTCTGAAAGTTGTTCTGATCGCTTTAGGTGCTGG
GCTAATCTTTGGGATAAGCATCATATGTACCGTATGTAGATTAATTAAAC
TTAGAGGTGATAAGCAGAGAGCTCTTCCAGTAGAAGAAATTGGATTGGTT
GAAATCCATCGAAATGATCAGCAAGGGGTTCGACACGAAGAAAATGTCTA
TATAATAGACTCCTCTCCTGCTATTGTGCAGGCTAAAAAGAGGAATCCTA
AGAGAACGAATGAGGAATTGTACCACGACCCTCAAGGTATTATCCATTGG
TGCTTGACACATTTTTTCATATAAGCGACTCCAATTTCGGGTCATTTTaa
ctcattttctgaaaatttcactcTCTGATATTATATCATATTCATGCTTA
TTGGGC

Coding sequence (CDS) from alignment at sc0003262:10527..13032+

>TCONS_00042177 ID=TCONS_00042177|Name=TCONS_00042177|organism=Clytia hemisphaerica|type=CDS|length=3753bp|location=Sequence derived from alignment at sc0003262:10527..13032+ (Clytia hemisphaerica)
GTTTGCTGTAATCTTTACAAACGTAATTTTGGTTACAAGTGGAGTAGATT
CGCCAATTCAACAATGAAACACCAGCAAAATCATTATGTCTCCTTATTGG
TGATTTTTTACATCTTATGTTTTCGGACAAATTTGTGTGTTGCGCGAGAA
AGAAGTTTTATTTCTCCTAAAGACAGATTAAAAGATCCTATTCGAGTAAT
TCAATTTGCAAATAAAACTGCGACACATATTGTCGCTGAGAACGGCAATG
ACGTAACACTTGATTGTCGGGTTTCTGGAAATATGAATGCAACTCACTGG
TGGTTTAAAATCAATCCTGAAAATGGAAAGCATACATTTTTGTCATCATC
ATCCATTTTAACGTTGAAGGATTTGCGATCGTCTGATTCTGGTCAATATA
CGTGCATTGTGAATGCGCAGTCAGCGAAAAATCAACGAAATTTCACTGTA
AATGTACCATCATATCGCTATACAATCAAAATTCCACTCCTATTGAAACA
ACTCGGCCCAAATCCGAACGTTAACAGTCAAACAAGTATTGATGTGGGGG
AGCATGTCAGGCTTCAATGTCACGAAGAATCATCTAAACAATCATATTAT
GGCTACAGAGTCGAATTTCGCTGGATTCGTTGGAAAAAGAACTTTAACCC
AACGATTCTTCAAAATATTGGGCGTGACATTATGAAAAATAAACTCGACT
TTACTAAATACCCCTTTGTTGAGGAGATCCCATCTTCAGAATACAAAGTG
TTTATCCATATGCGATACGATAATAATGTTAGATTCGGCAGACTTCACAG
CTCCGATCTTACCTTGTCTCAAGTTACGGAGGATGATCAGGGCTATTACT
CATGTGTCGCGAGTAATTcgtttggttttgattttttgacaaGATATGTT
GCTGTCAACAAAGtacatgataTTGAATCTCCAAGGATCAACATTCTGAA
AGTTGTTCTGATCGCTTTAGGTGCTGGGCTAATCTTTGGGATAAGCATCA
TATGTACCGTATGTAGATTAATTAAACTTAGAGGTGATAAGCAGAGAGCT
CTTCCAGTAGAAGAAATTGGATTGGTTGAAATCCATCGAAATGATCAGCA
AGGGGTTCGACACGAAGAAAATGTCTATATAATAGACTCCTCTCCTGCTA
TTGTGCAGGCTAAAAAGAGGAATCCTAAGAGAACGAATGAGGAATTGTAC
CACGACCCTCAAGGTATTATCCATTGGTGCTTGACACATTTTTTCATATA
AGTTTGCTGTAATCTTTACAAACGTAATTTTGGTTACAAGTGGAGTAGAT
TCGCCAATTCAACAATGAAACACCAGCAAAATCATTATGTCTCCTTATTG
GTGATTTTTTACATCTTATGTTTTCGGACAAATTTGTGTGTTGCGCGAGA
AAGAAGTTTTATTTCTCCTAAAGACAGATTAAAAGATCCTATTCGAGTAA
TTCAATTTGCAAATAAAACTGCGACACATATTGTCGCTGAGAACGGCAAT
GACGTAACACTTGATTGTCGGGTTTCTGGAAATATGAATGCAACTCACTG
GTGGTTTAAAATCAATCCTGAAAATGGAAAGCATACATTTTTGTCATCAT
CATCCATTTTAACGTTGAAGGATTTGCGATCGTCTGATTCTGGTCAATAT
ACGTGCATTGTGAATGCGCAGTCAGCGAAAAATCAACGAAATTTCACTGT
AAATGTACCATCATATCGCTATACAATCAAAATTCCACTCCTATTGAAAC
AACTCGGCCCAAATCCGAACGTTAACAGTCAAACAAGTATTGATGTGGGG
GAGCATGTCAGGCTTCAATGTCACGAAGAATCATCTAAACAATCATATTA
TGGCTACAGAGTCGAATTTCGCTGGATTCGTTGGAAAAAGAACTTTAACC
CAACGATTCTTCAAAATATTGGGCGTGACATTATGAAAAATAAACTCGAC
TTTACTAAATACCCCTTTGTTGAGGAGATCCCATCTTCAGAATACAAAGT
GTTTATCCATATGCGATACGATAATAATGTTAGATTCGGCAGACTTCACA
GCTCCGATCTTACCTTGTCTCAAGTTACGGAGGATGATCAGGGCTATTAC
TCATGTGTCGCGAGTAATTcgtttggttttgattttttgacaaGATATGT
TGCTGTCAACAAAGtacatgataTTGAATCTCCAAGGATCAACATTCTGA
AAGTTGTTCTGATCGCTTTAGGTGCTGGGCTAATCTTTGGGATAAGCATC
ATATGTACCGTATGTAGATTAATTAAACTTAGAGGTGATAAGCAGAGAGC
TCTTCCAGTAGAAGAAATTGGATTGGTTGAAATCCATCGAAATGATCAGC
AAGGGGTTCGACACGAAGAAAATGTCTATATAATAGACTCCTCTCCTGCT
ATTGTGCAGGCTAAAAAGAGGAATCCTAAGAGAACGAATGAGGAATTGTA
CCACGACCCTCAAGGTATTATCCATTGGTGCTTGACACATTTTTTCATAT
AAGTTTGCTGTAATCTTTACAAACGTAATTTTGGTTACAAGTGGAGTAGA
TTCGCCAATTCAACAATGAAACACCAGCAAAATCATTATGTCTCCTTATT
GGTGATTTTTTACATCTTATGTTTTCGGACAAATTTGTGTGTTGCGCGAG
AAAGAAGTTTTATTTCTCCTAAAGACAGATTAAAAGATCCTATTCGAGTA
ATTCAATTTGCAAATAAAACTGCGACACATATTGTCGCTGAGAACGGCAA
TGACGTAACACTTGATTGTCGGGTTTCTGGAAATATGAATGCAACTCACT
GGTGGTTTAAAATCAATCCTGAAAATGGAAAGCATACATTTTTGTCATCA
TCATCCATTTTAACGTTGAAGGATTTGCGATCGTCTGATTCTGGTCAATA
TACGTGCATTGTGAATGCGCAGTCAGCGAAAAATCAACGAAATTTCACTG
TAAATGTACCATCATATCGCTATACAATCAAAATTCCACTCCTATTGAAA
CAACTCGGCCCAAATCCGAACGTTAACAGTCAAACAAGTATTGATGTGGG
GGAGCATGTCAGGCTTCAATGTCACGAAGAATCATCTAAACAATCATATT
ATGGCTACAGAGTCGAATTTCGCTGGATTCGTTGGAAAAAGAACTTTAAC
CCAACGATTCTTCAAAATATTGGGCGTGACATTATGAAAAATAAACTCGA
CTTTACTAAATACCCCTTTGTTGAGGAGATCCCATCTTCAGAATACAAAG
TGTTTATCCATATGCGATACGATAATAATGTTAGATTCGGCAGACTTCAC
AGCTCCGATCTTACCTTGTCTCAAGTTACGGAGGATGATCAGGGCTATTA
CTCATGTGTCGCGAGTAATTcgtttggttttgattttttgacaaGATATG
TTGCTGTCAACAAAGtacatgataTTGAATCTCCAAGGATCAACATTCTG
AAAGTTGTTCTGATCGCTTTAGGTGCTGGGCTAATCTTTGGGATAAGCAT
CATATGTACCGTATGTAGATTAATTAAACTTAGAGGTGATAAGCAGAGAG
CTCTTCCAGTAGAAGAAATTGGATTGGTTGAAATCCATCGAAATGATCAG
CAAGGGGTTCGACACGAAGAAAATGTCTATATAATAGACTCCTCTCCTGC
TATTGTGCAGGCTAAAAAGAGGAATCCTAAGAGAACGAATGAGGAATTGT
ACCACGACCCTCAAGGTATTATCCATTGGTGCTTGACACATTTTTTCATA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026046XLOC_026046Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042177-proteinTCONS_00042177-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042177-exon-sc0003262-1491911889:10527..10980TCONS_00042177-exon-sc0003262-1491911889:10527..10980Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1510915933:10527..10980TCONS_00042177-exon-sc0003262-1510915933:10527..10980Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1575043694:10527..10980TCONS_00042177-exon-sc0003262-1575043694:10527..10980Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1491911889:11171..11629TCONS_00042177-exon-sc0003262-1491911889:11171..11629Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1510915933:11171..11629TCONS_00042177-exon-sc0003262-1510915933:11171..11629Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1575043694:11171..11629TCONS_00042177-exon-sc0003262-1575043694:11171..11629Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1491911889:12613..13032TCONS_00042177-exon-sc0003262-1491911889:12613..13032Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1510915933:12613..13032TCONS_00042177-exon-sc0003262-1510915933:12613..13032Clytia hemisphaericaexon
TCONS_00042177-exon-sc0003262-1575043694:12613..13032TCONS_00042177-exon-sc0003262-1575043694:12613..13032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003262supercontigsc0003262:10527..13032 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.154199	0	2.26997	0	1.64823	3.10924	5.70521	9.35262	4.8819	7.25137	13.0737	13.6084	8.33931	10.7262	0.829466	1.20663	5.08876	5.04685	0	0	0	0	2.7828	3.54839	0	0	0.281579	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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