TCONS_00042175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042175
Unique NameTCONS_00042175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042175 ID=TCONS_00042175|Name=TCONS_00042175|organism=Clytia hemisphaerica|type=transcript|length=555bp
ACTGGAGAAAAACCTTTTAAGTGCCAAGAGTGTGGTAAACGATTTTCTCA
ACGAGGTAATGTGACACGACATTCAAATGTACACGATGGAGTCAAATCAT
TTAAATGTAAGGCATGTGATAAGTGCTTTTCCCGAAAAGATACTTTGAAT
TTTCACATCAAGAGTCATAAATGTAAAAAACATGTCCAAATTGAAGAACA
AGACAANTTGAATTTTCACATCAAGAGTCATAAGTGTAAAAAACATGTCC
AAATTGAAGAACAAGACAATGCTTTCTGATGTAACAAACGTAATAAATGT
TTTAACAGTTTAAGTCATTTGACTGCTCATGTTAAAATCCGCCCCGAAGA
AATTGTTCCGTCCGATGGTAAAAGTGAATCCAAATAATTGTCAACTAAAA
AACATCAAGATATAAATTTATTTAATGTTGCTAGTTTGATTGTCGAGAAC
GAAGAGACGAGGTTAAAGAAAATCGATTATTCGAAGTATTGAGTATattt
tatgtgcagttgatatTATGCGAAAAATAGAGTATTTTTACAAGGTAGTT
GTTTN
Run BLAST on NCBI

transcript from alignment at sc0003258:10058..10612

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042175 ID=TCONS_00042175|Name=TCONS_00042175|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at sc0003258:10058..10612 (Clytia hemisphaerica)
NAAACAACTACCTTGTAAAAATACTCTATTTTTCGCATAatatcaactgc
acataaaatATACTCAATACTTCGAATAATCGATTTTCTTTAACCTCGTC
TCTTCGTTCTCGACAATCAAACTAGCAACATTAAATAAATTTATATCTTG
ATGTTTTTTAGTTGACAATTATTTGGATTCACTTTTACCATCGGACGGAA
CAATTTCTTCGGGGCGGATTTTAACATGAGCAGTCAAATGACTTAAACTG
TTAAAACATTTATTACGTTTGTTACATCAGAAAGCATTGTCTTGTTCTTC
AATTTGGACATGTTTTTTACACTTATGACTCTTGATGTGAAAATTCAANT
TGTCTTGTTCTTCAATTTGGACATGTTTTTTACATTTATGACTCTTGATG
TGAAAATTCAAAGTATCTTTTCGGGAAAAGCACTTATCACATGCCTTACA
TTTAAATGATTTGACTCCATCGTGTACATTTGAATGTCGTGTCACATTAC
CTCGTTGAGAAAATCGTTTACCACACTCTTGGCACTTAAAAGGTTTTTCT
CCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026044XLOC_026044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042175-exon-sc0003258-1491911889:10058..10612TCONS_00042175-exon-sc0003258-1491911889:10058..10612Clytia hemisphaericaexon
TCONS_00042175-exon-sc0003258-1510915933:10058..10612TCONS_00042175-exon-sc0003258-1510915933:10058..10612Clytia hemisphaericaexon
TCONS_00042175-exon-sc0003258-1575043694:10058..10612TCONS_00042175-exon-sc0003258-1575043694:10058..10612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003258supercontigsc0003258:10058..10612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.61231	2.29858	1.66762	0.510017	0	0	0.360005	0.24683	0.107552	0	0	0	0	0	0	0.0624831	0.153948	0.0505066	0	0	0.190435	0.290137	1.58711	0.597894	1.59491	1.80819	0	0	0.298869	0.999577
Blast
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BLAST of TCONS_00042175 vs. Swiss-Prot (Human)
Match: ZN680 (Zinc finger protein 680 OS=Homo sapiens GN=ZNF680 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.047e-16
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:    1 TGEKPFKCQECGKRFSQRGNVTRHSNVHDGVKSFKCKACDKCFSRKDTLNFHIKSHKCKKHVQIEEQDXLNFHIKSHKCKKHVQIEEQDNAF*CNKRNKCFNSLSHLTAHVKIRPEE 351
            TGEKPFKC+ECGK F+Q  N+T+H  +H G K +KC+ C K F++   L  H K H  +K  + EE       I+S    +H++I   +  + C +  K FN  S LT H +I   E
Sbjct:  317 TGEKPFKCEECGKDFNQFSNLTKHKKIHTGEKPYKCEECGKAFNQFANLTRHKKIHTGEKSYKCEECGKA--FIQSSNLTEHMRIHTGEKPYKCEECGKAFNGCSSLTRHKRIHTRE 431
The following BLAST results are available for this feature:
BLAST of TCONS_00042175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN6802.047e-1639.32Zinc finger protein 680 OS=Homo sapiens GN=ZNF680 ... [more]
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