TCONS_00042170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042170
Unique NameTCONS_00042170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042170 ID=TCONS_00042170|Name=TCONS_00042170|organism=Clytia hemisphaerica|type=transcript|length=381bp
ATTCAAAATCCAAAATCCCCAGATTCCAGTGACGATGACGATTGTCAGAT
CATAAAAACGATTCAAAATCGAAGATCCTCCATCTCCAATGAAGATGACG
ATTGTCAAGTGATAGAGCCAATTCCAAATCAACGATCTTCAAGTTCGAGG
GGCGATGGCGATTGTCAAGTGATAGAAACGAGTACAGTCAAAAATGAAAG
AAAGTGCTCAGAAGACATGGCTTATCTAAATGACGACAAACGATACCCTT
TATGGAAATCAAGCAAATGTCCTTTAGATACTTTACCAGTGGCTGAAAGT
TTATACTTTGGGAGGTACGATAGCAATAAGGTTTGTCAGGCTAACCCAAA
TTTCGTCAATATCAACTCAAGCTTTCTTGTT
Run BLAST on NCBI

protein sequence of TCONS_00042170-protein

>TCONS_00042170-protein ID=TCONS_00042170-protein|Name=TCONS_00042170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
IQNPKSPDSSDDDDCQIIKTIQNRRSSISNEDDDCQVIEPIPNQRSSSSR
GDGDCQVIETSTVKNERKCSEDMAYLNDDKRYPLWKSSKCPLDTLPVAES
LYFGRYDSNKVCQANPNFVNINSSFLV
Run BLAST on NCBI

transcript from alignment at sc0003255:4829..20762+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042170 ID=TCONS_00042170|Name=TCONS_00042170|organism=Clytia hemisphaerica|type=transcript|length=15934bp|location=Sequence derived from alignment at sc0003255:4829..20762+ (Clytia hemisphaerica)
ATTCAAAATCCAAGTATATTTTAGAGATCttgaattttcttcaaaattat
tttgaacaatatcatagaaatttttttaaacaggcATCAGAACTTTTTCA
TTTCTAGTGAATTTAAGAGAAATATATACCAAAATTTCGTTATGGATTAG
ATCTATATTGGGCTTTCCCAGTAAAAATTATGCAGGGGGGGGTGGACATA
GCAGGTACTCCCCCGAAGATTCTGGTGGGGGTTgacgattttcaaatttt
ttgaatcagGTGGGGGTTGAGATGATGAAAATTTCAGGTGGGGATAACCC
TATACAGGTGGGGGTTGTGGAGTTTTCGTAAGAGAAAGAGAATTATTAAT
AAACTCGATTAGAATTTTAAActaattaagaaaaaaatcccAATAACACT
GGTGAGAGTGTTtcaattaccttaagggaagaaatttttgaggaagaaat
tttcgcagaatttaatttcatgttttttttggcaaaccgcaaaattaaaa
attaattaaatcaaattccacgaaatttgttgtttttgaggTCTGAACCg
ggaaattaaattccgcgaaaatttcttcccttaaggtaaataaATAATCT
CTATTaatgaaaatctttcaaatttgagaaaaagtttcagtttcagtttg
GGGGTTGCCCAAGAAGGTTAGGGTTGAGTACTCCTCAATTTTCAGGAGGA
TATAAGCTTTTTCTGATACTTTATCCCCGGACATTTTGCATTTTACACCT
CCGGACAGGAGGTTAAGCGttaatttaccccctggacatccAAATCTACC
CCAGGAAATGGcaaatttacccctggacatggTTGATTTCCTgctacagc
acctgaccccgagaatgcagtaaaccccgagaatgtaggtttctcatttt
ttagcgtTGTAGcgctaacgatagttcaacttcataaaaagttgtatCAG
AGCCTGTTGATACATATTACTTATCATTTataaacataaaatttaaactt
GAATTAGTTTTTTCCAACGGAAATCTGAATCAAAGTTGATCGGATACAAC
CTGAATTGAGGcattttttgaataaatcttctctaaatcgaaatctatgg
gaattaagttatgatgatagggtattttcttactcctaatgaacaaagga
aatgggaaaaatagtccatttccaaatttattgttctaagtcagatattt
tgacgaaaaagtTTGACCTACTTTTTGGGGTTAGTCGACCTTCAATTTTG
GGCCTTCATAATCCGAcacaaaaaagtttgtcaaattatgtaaaacttat
ttgttgtactttcataacatgaaagtactacctgaGAGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTTTCGACGTatcccagaccc
gctgggaccccaccCCAATTAGAAAActtgcctaagtttggaacaataga
atttctatccacaTTGGGACTTTAGTAGTAATCTTTGTACCCGTTGTGGG
AAAAGTTCCAACGGGGCTATGAGGCAGGGGTAtagttacattattcacat
attttaacaacatattttcaacctacaaaataaaaacaactttcttgtct
cttcttttcttcctttcttttacttttcctcatttgtagcacgataaaat
taatatctttattaattttggcagagtatatttctaaagtatgaatttct
tttagAAATTAATAATTTcggatgaatactgaaattctgctctcaacaac
caaatcttttcacctacattctgggggttaaaaagcgaaaaaatctattt
ttcagaataacaaaatgctctttagaatattgtttttgcacaaaatattt
ctaaaatttgctgttataattaatccatttgaaaaaatatcaacatttta
ctattaccagatttaaagccataaaaccaaacctacattctgggtgttat
aacgaaaatgggagtcaacttcaaggaccaaaaaaatttgcctatctatc
aaaagtaatgaaactagcccctgggaaaggattttggaggttcaaaattt
cattgaaaatattcattgttttaaaaattcaaatctacatctttcaggtc
tgattcaaatttcacctacattctcggggtcaggtgctgtactcAGGGAC
acaatatcctccacccccttcacaattcttttctggaaaagcccatttca
aataaatttcatatgTTCCTTTTTAGGATCCCCAGATTCCAGTGACGATG
ACGATTGTCAAATCATAAAAACGATTCAAAATCGAAGTAAGTTGACCTAA
AGTTAAAGTGTCTTTaagattatatatattttatatttttttaaatatat
tttattaaaatctcaTTCATGCcaacaagaaaaacattttatttgaaGAT
GATTGATTTGCAATCAATTTCATATTTCCACTCTCCAGGATCCTCCATCT
CCAATGAAAATGACGATTGTCAAGTGATAGAGCCAATTCCAAATCAACGT
AAGTCTGAGATATcatactcgatgtagaaattttcttctgaCACCCCGCG
CTTTAAAGCtcatgaaaattttaacatttggAAGGTTAAGGCTACATCAT
TTGACAAGACCCTACATTTAAAGCTGGACTGGGTCTTAGTCATCTTTAAC
CGCCATCTTTAATATATGCAATAAGTATACTATAAAACCAGAcaagtatt
tttcaaaacaagccAGACTAGACTCCTGGACTCACTTCatactttcattt
ttaggatCTTCAAGTTCGAGGGGCGATGGCGATTGTCAAGTGATAGAAAC
GAGTACAGTCAAAAATGAAAGTAAGTATAGTCTCATTGACTTGCATTTGG
GTACAGAAAACAGTTTGTACATCTTATTTATAACTGCTCTGTTATATTAC
CTGCAGAGGTAGGCATAaagaaatctttgaaattttttcctcaaatctta
gtatatttttgaaaatttaaatacgTACTTTTAATAAGTAAAGTAGCGCA
CACCCTGAGATGagatttttgctttaaaaagttaTAAGGGATTACTTTCA
CTTTTACAAATTTTAGGAAAGTGCTCAGAAGACATGGCTTATCTAAATGA
CGACAAACGATACCCTTTATGGAAATCAAGTAAATGTCCTTTAGATACTT
TACCAGTGGCTGAAAGTTTATACTTTGGGAGGTGCGATAGCAATAAGGTT
TGTCAGGCTAACCCAAATTTCGTCAATATCAACTCAAGCTTTCTTGTTGA
CACATCAAAAATGATCAATGCAAATGACATAGTTTGTGATACTCATGGTC
ATCGGGAACGTGCCGGTACTAAAACCCTTAAATGTTTGTCAAATATATGG
CTGACTGATCAAAAGCCCGAAAGGAAATATGAAAGACGACAGGAACCCTC
ATTTGAACAACGTAAAACGTAGAGTATATTATCATCGTCATCACAGAGAC
TTTCATAAAGTGATCATTTCTATTGATTCCACATCAATAGTATTTcttca
atattattttgatggtGACCAAAAGGACGTTATCGCGTCACATCCTCATG
GAAATGCCAAAACAAACGAGCCATACATGCGAACAAAAACTTCAGTTCTT
GAATCAATTAAGAATAGCCATGAAAAACCGAAAAGAGTGGCCAGCAAAAT
TTACCAGGATGCAGGTGGTTTTCTTGGTGTTGAAGGACCCAATGAACTTG
TACGCAACATGGTCCAAATTTATAACGTGAATCGTAGTTTAAAGGTTGAT
GAGGATGAGCTTATTGAAGTCAGGGATTTATACCAAAGGGACAAAAAATT
AGGAAATATGTTTATCAGAGAGATGAGTGTTATGCCTGAAGTCAGTGTTT
TCGTTACTTCGGATCAACAATTACTGGATGTAGAAAGATTTTGtacgaaa
aaaacaaaattttcagttttaggTGTGGATGCAACTTTTAATTTGGGTCA
TTATTATGTAACACTTACAACTTATCGCCATCTCATGTTTGAAACAGATA
ACGGAGTTCATCCAGTCCTTATCGGACCTTCGTTGATCCATACAGGAAAG
TCGTACGAATCCTTTTATACGCTGCCAGACTCGATTGTAAAATGGAATGG
AAATGCCAGGGATGTTCTTGTCTTTGGGACCGATTCCGAAAAAGCTTTAT
ACGATTCATTGAGAGTAATCTTTCGACAAAGTCTTCATTTACTTTGCGAC
TTACATATGAAGGataatgtaaaaagtaaattATTTGAGTTTGGTATCAA
TGGACATAATAAAACTGTTATATTCAAcgatatttttggaaaggttATAA
ACAACACTAAAGAGCCTGGTCTAGTTGATAGTCAATACCTCggtgaattt
gaaaatgttccCAAAGGCCTTTTTATAAAGTGGGAGACAATGGGacaagt
agaaaaaaagttcagGGACTATTTTCTGCAACACAAAGCGAACGATATTC
GATTCAATTGTATGACAGCTGAGCTTCGTGCAATGACAGGTTTGGGGTTT
CCCCCGATGCCATACACTCAGAATGCCAACGAAAGCAGCAACTCCAGACT
AAAATCTGGCCTCACTGATTCGCGAAAAATGCCATTGAAAGATGTCGTTC
TATTATTGCGTAGTGCGTCTGACTATCAAGAGGAACTAGTAGAGCGTGCA
CTTTTGggttatctggtaccagatgtggaaatatgctacgacacgctttg
ctctgaaggtcgggcatattttaacatctggaaggtttgcaTTACGGAAT
TTGACTTGACCGCGTTTAAACATTTTGTGAGGAGCTTGGAAACGATCAAC
ACAGCAAGTTAGCATCTGATTCCATATTGGATGCGGGTGCTAGgcagaaa
ataataacaaatctgattcgcatcagatttgttatattttctagGCTAGC
ACCGTATTCGTATTAGCACCACATTTGATATGACTCGGAATCATATTCAT
GTACTAGTaaacaaacataaaaaatccctaatttagcttcatttacatga
aaatacaacttaaaacatgaatttattgcTTTTCCCTACTGACCTAGACA
CACTCGATAAATATTACACCAACCTTCATAGTTTTCAGGAcctcaaaagt
gaattttcaatgtgctctttaaaattacaaaataggGCTGTTCTGTTGGC
ACACAAGACACAAAAAGTGAAGTTAATCGTTAATAAGATACAAACTACCT
ATACAGAAGTTTGTAAACAAGTCTGTAGATCTTTCTGAAGACAAAATTGT
CTGTTTTGTACACATGTTTGTACTGCTGCTAGAGCACTTTGACTGACTTT
GACTGTTGTCGGTCAGTCGGTTGTGTTCAGTTGTCTGGCGGTCAACAGTT
GTTTTGATAGGACCGCACAAGATTATACCAGCATAAAAGTTACTGAAAAG
GCATAAGGAACATACCTGTTATTGTTTCTTTATGATCTTTGAGTTTGGCT
TTgagaaaattcaataaaaatcggtcaccaaaacaaacaaaaaataatca
acattTGTGTGTaaaaaacaatctttaaaaggttggtgcatttacagaaa
ttacactgaataCTAAAAGTAATAACAAGAAAGTATAAAAACATTTATAT
TGCAAAAAAAtccaccaaaacaaaccaaaacaaccaaaatctaACAAAAG
TTCTTCACTACTTCCATGCCCTTCTTGAATCCGAAATTTGCTTTGTCATT
GAAGCGCCAAAACtgtaaataaaattagtttttgacgGGTGGCGCAGCAg
acattttcatgctaaattttgTTCAGTCGGGACGAACAAAATTCTTGACC
AAGTAAAGATATAGCCATTGAACCCGACTGttgtcggcacatcaaagggc
cactactaaccctctccgatggtatattggtccgctcctttagagcttta
gcgtgggcggctgccaatacgccatcggaatataaGATAAACTTTTGGGT
AGCAGCACCTCCTGGCGCCTGCTACCAGAGTATAAACAGCAAGTGAAGAA
CATTGACCGTATTTATCAGATGAATAAATCGCAAAGAGCaagaattttga
aacaaatcaaaactATGTCTGTGGTTGGAAACATGTCCCAAGGAGAATTC
CAAATTCCAGCAGAAGAAACTGGTCTTTTATATCCACCTATGAACATTTT
AAAGGATATATTTACTGATGCATCTTTATTGCTCAATCCAGACTGTATTA
TTGATGCCCGGGTGCTCCCACAGTGAAAATTGTTAAGAACTTGAACGATT
CACTGCAACCATTTAAAGTAGCCCTCAATAATGGAATAATATCTTGCGAA
CATGCCTTAAGTGTTTCTCAAAAAGAAGGGCTCCAATCTAAATTTATAGA
TAAGTTAAACAAAAAGCAGTCCATTAGGTTTACTGGACGAAGCCTCTCCA
ACTTGTGTAATGTtgataaaaatccaaaaactggACAGAAAAATACAAAG
TCAACATCAAAACGAAAAGGGCAAAAGAAATCCAATACTGTCTTTTCGTA
CACAAACAACCCAAGTGAGAGACTCGACATTGTATCGCCATCGCAAGAGA
GACCCTCAGTAACTCCACAAGTCAAAACTTCAGTAACCCCACAAGCCGAA
ACTTCAGTAACCCCACAAGCCGAAACCTCAGCAACTCCACAAGCCGAAAT
CTTGGAAACCCCACGAGCCGAAACCTCAGCAACTTCACAACCCGAAATCT
TGGTAACCCCACAAGCTGAAACCTCAGTAACTCCACAAACCGAAACCTCA
GTAACTCCACAAGCCGAAACCTCAGTAACTCCACAAGCCAAAACCGTTGA
AGCAGACACCGATCTAATTATTATCCAGGCCACTCATACAAACATCGTAT
CGCCATCCGAGAATGGAATACTCTCAGCAACTCGAGGAGAGACACATCAT
ACGATGAGAAAGAAGAGATCTGGAACCTCTATTGGCCAAAGTTCAAAAAA
AGCCAAAGAAATGCCAACTCAGATCCTTTTACAAGCTACCAACTACACAA
TTCCGCCTAGCCAAGAAAATTACCAACCAGTATTCGCTTTGGGAAGACCA
CTTCCGCCGACCCCACCTATGCCAAAACCTCAAGTTCATCCCTACGCAAT
CAAAAACCGCACTGGGAATATTGCAACCTGCCATGGCTGTCACAAAAGGT
TCGATAAATAGtagtgacaaaaatattgtGTCAAACTTTCATGCATATTT
TCGAGGCGTCCTTTTATAACTAAAGAACATATGACCATTCATTACCAAGG
TGATAAAGTAGAAAAAGTGACTCAGCTTGTTTCAATTATGTGACATTAGT
GAGAAGGAAAGTCACTACCTAGTCTTTTGAGTTAATTCTTACAAGTTCAT
ATTTTACaaagtttatgattttttatagGTCTCTGCAATTGCATTAATAA
CTTCGCCCAACTTTTTCCCTGGAAATCACAAAGTAAAAAGGACATATAAA
GTAATAGGTTTCAGATTCTCAATGAACCAGGGGGAGTACGTATAATACTA
CACAGCATTTTGAAAGTTTAGATACCAATCCACTCACCCTCCTATATAGT
AAGTACAATGATTATCCAGCAATCTGCCAAACATACCCCTACATCCCCTA
AAAAATGATACATACCGCTGTATTGTACACATACCCACTCCCCTCTGAAT
GAACTTCAAGGCTGAGAGGTCTAACTTTGATTGTATCAACTTGTATTTTG
ACGCCATTTTTGAGCAGCCTTTGATTCAAAAGACCAAGGGAATTCCGGGT
GAAAGTTTGGGTGTGTTTGCAATGTTTTGGGAGTTTTGTTGTTTCAGATT
TATGatagttttttcattgttttcgttttaaagttattattgttattgat
GTTTCGATACAGTATATAAAGTAGAATAGGATTTCTATAAAGGNCAATGT
TTTGGGAGTTTTGTTGTTTCAGATTTATgatagttttttcatttttttcg
ttttaaagttattattgttattgatGTTTCAATACAGTATATAAAGTAGA
ATAGGATTTCTATAAAGGAAAACCCTCTCTTACAACAGTGCTCTATAAAC
GCCCATAACCATATGTATCCAGgctgaaaatgttaaaaaagtcCTCCGAT
TTTGACCCTCAAGTGCACTCAAGTATAAGAGAAAGATTTTGAGGatcttt
tctcaatttttctagACACAATTAACNCTATGACtcccggccttattgag
ccaaaatgacaaaaagaataaaaagaacgggggtcactcctttttttcga
gacttaaagtcaaaatgacttaaagttcaaaatgaaacaaatgaaacaaa
tgacacgggtttggggatATGTCCATTGGCGTATAGGGAcgccttatgcc
ctatgacccccggcctcattgagccaaaatgacaaaaagaaaaaaaagaa
ctgGGGTTTCTTTCCAATTTATAGaagcaaattttgaaatttaactaATG
GGCACAGGGACCCTCGTATCCCTTGGCCCGATGGCCTCATGGGTCCATGT
GGAAACAAACAAAGATCAAAGGTTTccttcactttttttataagaaccaa
gtCTTGAGtcacattttttgttttttcttaaataaatttGGGCTAgttaa
attgatttcaaattatctCCACAATACCAAGACAGTGGGGAAGGGTAGAT
ACCTCACTTGTACACCCTCATTGtcaaaaggaaaatttaaactttcaTTT
AATTTCAGTTTGACATATTCCCTTATACTGGACATGTATGNTTTTGCCGG
TCCGAAGAGTTAAGCGGTCTGTTCTATGaggttcaaatttcaaaatttta
attcaccCAAAACATGCATCTATATAAGGGTGATCAACTCAGAAAGTTTC
ATTGGTATATCTTTTTAACTTCTCCGGAAATTGACCGACCCGTGTTTGAC
CTATTTTGGCACTTTTCAGTGCACGGCTCcggccgccattatggattttt
tcaaatttttatttttttcattaattttcatCTAGTTTNATCTGTTccgc
gatttttttcccgctcgTCGTTAAGACTCCTCAGTTTAATTCCGATTTTC
CCGATTTGACTTAGAAAATCCGAAACAAGAATGTGTATGCGCCGAGCTGC
GCTATAATTATTACATCAGTCGTTATCTCACTTATATTGCGCCACCTCTT
CCGAAGCGTACTGTGAGCAATTTTATGAAATGTTAAAGTGCGAAGTGGTT
TCATGACCCAATTGATCCTGATTACCCAAGATGCACCGCGACCCTGAAAT
AGCCTATGGAGAAGAAGCAAGAAGATTTCGATCAGCCTCAACTTTCTTTC
ATCATCTTCTTGAGGTGAGAGTACTTGAtttatttcaaagtttattATTG
ATTCCTTgtcaaagttattttcaaaaaagatagcagcaagttagcctggg
aatccaagctcataattttagaaaaaacaaaaaatacctcacctcacaaa
gttcttaaattatagagcttggtgcaggtagattagtctgacacagaatg
ttataaacagtctgtgtgtgaacccttgttgacagactttctgaactttg
gaaacccaggcaaacacacataatcaacttaccataaaaactctttcaca
agctctaaagactttcaaaactactaaaacccacatcaaaacatcaacca
catgtatttagacttccagccaacagccattttgtttgaaatgaatctat
gttttcattttcatttgttctccttttttctgcagagtcagctttttcca
taaattatgcgcgcgcatcgaaataatcaaaatgcgcgcgaaagtactgc
taagtaatacgccaaaagctgGCCANNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNgtgacgggaaccaaacaattttt
tacgaacggcctatgaaattttggaaagtGGCCCATCAATCAATAGAAAA
TATTGCCAGACTGGTTTTAAATGAACAAGTTGGATTAATGAACTTTGTCA
AACTTATAATCGAAccacaaaaatttggaaaaatttgaaaaatttgaaga
gtTTGAGTAGGCCAGAGGTCTGGCTGCGATTTTTATGTGaaccaaattta
ttttcttatcttttctgaaaattttagacCTATTTCGATCAAagattctt
aatattttgcttgGAGGATACACATACTCTCTTCCCATTAACTTGTGTCA
AGTATAAATattggtgatgacgtcatcattttgcGTCTGTGACAtcatat
tttatcaaaaattaagtctataaaaaattacgtcatatttcatcaaaaat
gatGTCAATGACGTTATACTTCACTATAAAGAGCTATTTAATTGCCCAAA
ATGATATTCAAATCaggttttttaattttatttggaAGCGATGTAGCTAT
TCTAATGATGTTGTGTACCAAAAATCAGCTTTATTTTATCCTACCAGAAA
AAAAACCAGGTTgtattttttagctttaaaatttagtctaaatgaagaaa
atgccaaaatCTCCTGAAAGGTTCTGAGTTTTGACTTGATTTATATCAAC
GAAAACTTTTTTACTGTAGTTTGAATAAGTAAGACAGTCTGGAATAGACC
ATCCAATCGATAAAATCAATTATCAAACATAATCAATAACCAagcgataa
gtaatcgatggatcaGTTATTGATCACCTCTAATAATCAATAGATGAtgg
atactcaagattttttaagtcTTATTATTTATAGATTATAAGAGGTGATT
GATatttatcatatttatcaaattatcaTAATTATATACTTGAAACTTNA
AGATTTTTTTAAGTCTTACTATTTATAGATTATAAGAGGTGATTTTGATa
tttatcatatttatcaaattatcaTAATTATATACTTGAAACTTGGTATG
TAGATTACTCTATAAAACAGttggcaaaaaatgttttaaaaaatgccTTA
TTTGATGACATCACCATTTTTGAATAGACTGATAaacctaacctgagatc
agattgtgaatattttctgcacaccacgctgaagctctaaagggatgtgt
gaaaacaaacaatctgacgaatatgcaatctcgaaatcgtaaggactaaa
aggactgggaataacaacaaagttgcgcgattgtgtttatgaatagggcg
ccgtattagtttttatttttccggcgcacaacaagattcttgttgtagaa
ttttccgcgggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNattttccgcgggaggactattttcctcagatgtataattttcaagt
gcctttagaggtttaccgtgcgcgtaagaaaattatgaacatctgttatc
aggttagatAAACCAGACTTTGAGCGCCATATTTTCATAATGGCAACATG
CATGCCAAACTTTGAGTATAGCTTgcttcaatcaaaagttatggcaattt
cttttttttaacaggcttgaaattttgaccctaaaaaaatttcaactttg
aacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNCTGAACCgggaaattaaattccgcgaaaacttcttccct
taaggtaaataaATAATCTCTATTaatgaaaatctttcaaatttgagaaa
aaatttcagtttcagtttgGGGGTTGCCCAAGAAGGTTAGGGTTGAGTAC
TCCTCAATTTTTAGGAGGATATAAGCTTTTTCTGATACTTTATCCCCGGA
CATTTTGCATTTTACACCTCCGGACAGGAGGTTAAGCGTtaatttaaccc
cctggacatccAAATCTACCCCAGGAAATGGCAAATTTACCCCANCTCAA
TTTTTAGGAGAATATAAGCTTTTTCTGATACTTTATCCCCGGACATTTTG
CATTTTAGACCTCCGGACAGGAGGTTAAGCGTtaatttaaccccctggac
atccAAATCTACCCCAGGAAATAGcaaatttacccctggacatggTTGAT
TTCCTGCTACTCAGGGACacaatatcctccaccccccttcacaattcttt
tctggaaaagcccatttcaaataaatttcatatgTTCATTTTTAGAATCC
CCAGATTCCAGTGACGATGACGATTGTCAGATCATAAAAACGATTCAAAA
TCGAAGTAAGTTGACCTAAAGTTAAAGTGTCTTTaagattatatatattt
tatatatttttaaatattttttaaatatattttattaaaatctcaTACAT
GCCAACAAGAAAAACATTTTATTTGAAGATGATTGATTTGCAATCAATTT
CATATTTCCACTCTCCAGGATCCTCCATCTCCAATGAAGATGACGATTGT
CAAGTGATAGAGCCAATTCCAAATCAACGTAAGTCTGAGATATCATACTC
GATGTAGAAATTTTCTTCTGACACCCCGCGCTTTAAAGCTCATGAAAATT
TTAACATTTGGAAGGTTAAGGCTACATCATTTGACAAGACCCTACATTTA
AAGCTGGACTGGGTTTTAGTCATCTTTAACCGCCATCTTTAATATATGCA
ATAAGTATACTATAAAACCAGACAAGTATTTTTCAAAACAAGCCAGACCA
GATAGGGACTAGACTCCTGGACTCACTTCATACTTTCATTTTTAGGATCT
TCAAGTTCGAGGGGCGATGGCGATTGTCAAGTGATAGAAACGAGTACAGT
CAAAAATGAAAGTAAGTATAGTCTCATTAACTTGCATTTGGGTACAGAAA
ACAGTTTTTACATCTTATTTATAACTGCTCTGTTATATTACCTGCAGAGG
TAGGCATAAAGAAATCTTTGAAATCTTTTTCCTCAAATCTTAGTATATTT
TTGAAAATTTAAATACGTACTTTTAATAAGTAAAGTAGCGCGCAGATGAG
ATTTTTGCTTTAAAAAGTTATAAGGGATTACTTTCACTTTTACAAATTTT
AGGAAAGTGCTCAGAAGACATGGCTTATCTAAATGACGACAAACGATACC
CTTTATGGAAATCAAGCAAATGTCCTTTAGATACTTTACCAGTGGCTGAA
AGTTTATACTTTGGGAGGTACGATAGCAATAAGGTTTGTCAGGCTAACCC
AAATTTCGTCAATATCAACTCAAGCTTTCTTGTT

Coding sequence (CDS) from alignment at sc0003255:4829..20762+

>TCONS_00042170 ID=TCONS_00042170|Name=TCONS_00042170|organism=Clytia hemisphaerica|type=CDS|length=1905bp|location=Sequence derived from alignment at sc0003255:4829..20762+ (Clytia hemisphaerica)
ATTCAAAATCCAAAATCCCCAGATTCCAGTGACGATGACGATTGTCAGAT
CATAAAAACGATTCAAAATCGAAGATCCTCCATCTCCAATGAAGATGACG
ATTGTCAAGTGATAGAGCCAATTCCAAATCAACGATCTTCAAGTTCGAGG
GGCGATGGCGATTGTCAAGTGATAGAAACGAGTACAGTCAAAAATGAAAG
AAAGTGCTCAGAAGACATGGCTTATCTAAATGACGACAAACGATACCCTT
TATGGAAATCAAGCAAATGTCCTTTAGATACTTTACCAGTGGCTGAAAGT
TTATACTTTGGGAGGTACGATAGCAATAAGGTTTGTCAGGCTAACCCAAA
TTTCGTCAATATCAACTCAAGCTTTCTTGTTATTCAAAATCCAAAATCCC
CAGATTCCAGTGACGATGACGATTGTCAGATCATAAAAACGATTCAAAAT
CGAAGATCCTCCATCTCCAATGAAGATGACGATTGTCAAGTGATAGAGCC
AATTCCAAATCAACGATCTTCAAGTTCGAGGGGCGATGGCGATTGTCAAG
TGATAGAAACGAGTACAGTCAAAAATGAAAGAAAGTGCTCAGAAGACATG
GCTTATCTAAATGACGACAAACGATACCCTTTATGGAAATCAAGCAAATG
TCCTTTAGATACTTTACCAGTGGCTGAAAGTTTATACTTTGGGAGGTACG
ATAGCAATAAGGTTTGTCAGGCTAACCCAAATTTCGTCAATATCAACTCA
AGCTTTCTTGTTATTCAAAATCCAAAATCCCCAGATTCCAGTGACGATGA
CGATTGTCAGATCATAAAAACGATTCAAAATCGAAGATCCTCCATCTCCA
ATGAAGATGACGATTGTCAAGTGATAGAGCCAATTCCAAATCAACGATCT
TCAAGTTCGAGGGGCGATGGCGATTGTCAAGTGATAGAAACGAGTACAGT
CAAAAATGAAAGAAAGTGCTCAGAAGACATGGCTTATCTAAATGACGACA
AACGATACCCTTTATGGAAATCAAGCAAATGTCCTTTAGATACTTTACCA
GTGGCTGAAAGTTTATACTTTGGGAGGTACGATAGCAATAAGGTTTGTCA
GGCTAACCCAAATTTCGTCAATATCAACTCAAGCTTTCTTGTTATTCAAA
ATCCAAAATCCCCAGATTCCAGTGACGATGACGATTGTCAGATCATAAAA
ACGATTCAAAATCGAAGATCCTCCATCTCCAATGAAGATGACGATTGTCA
AGTGATAGAGCCAATTCCAAATCAACGATCTTCAAGTTCGAGGGGCGATG
GCGATTGTCAAGTGATAGAAACGAGTACAGTCAAAAATGAAAGAAAGTGC
TCAGAAGACATGGCTTATCTAAATGACGACAAACGATACCCTTTATGGAA
ATCAAGCAAATGTCCTTTAGATACTTTACCAGTGGCTGAAAGTTTATACT
TTGGGAGGTACGATAGCAATAAGGTTTGTCAGGCTAACCCAAATTTCGTC
AATATCAACTCAAGCTTTCTTGTTATTCAAAATCCAAAATCCCCAGATTC
CAGTGACGATGACGATTGTCAGATCATAAAAACGATTCAAAATCGAAGAT
CCTCCATCTCCAATGAAGATGACGATTGTCAAGTGATAGAGCCAATTCCA
AATCAACGATCTTCAAGTTCGAGGGGCGATGGCGATTGTCAAGTGATAGA
AACGAGTACAGTCAAAAATGAAAGAAAGTGCTCAGAAGACATGGCTTATC
TAAATGACGACAAACGATACCCTTTATGGAAATCAAGCAAATGTCCTTTA
GATACTTTACCAGTGGCTGAAAGTTTATACTTTGGGAGGTACGATAGCAA
TAAGGTTTGTCAGGCTAACCCAAATTTCGTCAATATCAACTCAAGCTTTC
TTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026040XLOC_026040Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042170-proteinTCONS_00042170-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042170-exon-sc0003255-1491911889:4829..4841TCONS_00042170-exon-sc0003255-1491911889:4829..4841Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1510915933:4829..4841TCONS_00042170-exon-sc0003255-1510915933:4829..4841Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1575043694:4829..4841TCONS_00042170-exon-sc0003255-1575043694:4829..4841Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1491911889:19724..19783TCONS_00042170-exon-sc0003255-1491911889:19724..19783Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1510915933:19724..19783TCONS_00042170-exon-sc0003255-1510915933:19724..19783Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1575043694:19724..19783TCONS_00042170-exon-sc0003255-1575043694:19724..19783Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1491911889:19947..20006TCONS_00042170-exon-sc0003255-1491911889:19947..20006Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1510915933:19947..20006TCONS_00042170-exon-sc0003255-1510915933:19947..20006Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1575043694:19947..20006TCONS_00042170-exon-sc0003255-1575043694:19947..20006Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1491911889:20274..20339TCONS_00042170-exon-sc0003255-1491911889:20274..20339Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1510915933:20274..20339TCONS_00042170-exon-sc0003255-1510915933:20274..20339Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1575043694:20274..20339TCONS_00042170-exon-sc0003255-1575043694:20274..20339Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1491911889:20581..20762TCONS_00042170-exon-sc0003255-1491911889:20581..20762Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1510915933:20581..20762TCONS_00042170-exon-sc0003255-1510915933:20581..20762Clytia hemisphaericaexon
TCONS_00042170-exon-sc0003255-1575043694:20581..20762TCONS_00042170-exon-sc0003255-1575043694:20581..20762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003255supercontigsc0003255:4829..20762 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.480347	0	0	3.9601	2.00654	1.91882	2.96172	0	0.553297	1.89944	0	1.00353	0	0.539342	0	0.329444	0.886487	0	0	0	0	0	0	1.33385	2.1643	0	0	0.506649	0.493109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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