TCONS_00042165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042165
Unique NameTCONS_00042165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042165 ID=TCONS_00042165|Name=TCONS_00042165|organism=Clytia hemisphaerica|type=transcript|length=564bp
tgtcTTTAGTAAATCCAGTGAATCTCGAACAAACATGACGGCGCAATCAG
CCGTGACCATGAGCCATTTATTGCAACTCAAAGCGAAAGAATCAATACCA
TTCCAATTTGTGATGAGGTATCTATACTCCGGACAAATCAGAGCGGCGCC
AGCGTAAGCCGCATCTACATTCACCCACAATCCTTCTTGTTTTGCCACTG
CACTGATTTCATCAATCGCATCAAATGAACATAAACTTGTGGTACCCAAA
GTCGCGCATACAAAATATGGCATCAAACCTTTAGCCTTATCTTCTTTGAT
TGCACTTTCCAAAACCTCCCCACGCATGCTGTGTTTGCCATCAATATCTA
AAAGTCGAAGTTGTGTACCTGCAATCCGAGCTCCCTTTTCCAACGACGAG
TGTGCTTGTTTTGATCCATACGCAACAAGTTTTGAAGCAGCGTCAACTTG
GTTCAAGTTATGTTTTTCAAGCATACGATGTTTGGCAGCTAGCATGGCAA
TGAGTATAGTTTCGCTCATACTTCCTTGTATGACACCACCTCCTTGACCT
GGACCTTTAAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00042165-protein

>TCONS_00042165-protein ID=TCONS_00042165-protein|Name=TCONS_00042165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
FFKGPGQGGGVIQGSMSETILIAMLAAKHRMLEKHNLNQVDAASKLVAYG
SKQAHSSLEKGARIAGTQLRLLDIDGKHSMRGEVLESAIKEDKAKGLMPY
FVCATLGTTSLCSFDAIDEISAVAKQEGLWVNVDAAYAGAALICPEYRYL
ITNWNGIDSFALSCNKWLMVTADCAVMFVRDSLDLLKT
Run BLAST on NCBI

transcript from alignment at sc0003250:3922..4485

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042165 ID=TCONS_00042165|Name=TCONS_00042165|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0003250:3922..4485 (Clytia hemisphaerica)
TTTTTTAAAGGTCCAGGTCAAGGAGGTGGTGTCATACAAGGAAGTATGAG
CGAAACTATACTCATTGCCATGCTAGCTGCCAAACATCGTATGCTTGAAA
AACATAACTTGAACCAAGTTGACGCTGCTTCAAAACTTGTTGCGTATGGA
TCAAAACAAGCACACTCGTCGTTGGAAAAGGGAGCTCGGATTGCAGGTAC
ACAACTTCGACTTTTAGATATTGATGGCAAACACAGCATGCGTGGGGAGG
TTTTGGAAAGTGCAATCAAAGAAGATAAGGCTAAAGGTTTGATGCCATAT
TTTGTATGCGCGACTTTGGGTACCACAAGTTTATGTTCATTTGATGCGAT
TGATGAAATCAGTGCAGTGGCAAAACAAGAAGGATTGTGGGTGAATGTAG
ATGCGGCTTACGCTGGCGCCGCTCTGATTTGTCCGGAGTATAGATACCTC
ATCACAAATTGGAATGGTATTGATTCTTTCGCTTTGAGTTGCAATAAATG
GCTCATGGTCACGGCTGATTGCGCCGTCATGTTTGTTCGAGATTCACTGG
ATTTACTAAAgaca

Coding sequence (CDS) from alignment at sc0003250:3922..4485

>TCONS_00042165 ID=TCONS_00042165|Name=TCONS_00042165|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0003250:3922..4485 (Clytia hemisphaerica)
TTTTTTAAAGGTCCAGGTCAAGGAGGTGGTGTCATACAAGGAAGTATGAG
CGAAACTATACTCATTGCCATGCTAGCTGCCAAACATCGTATGCTTGAAA
AACATAACTTGAACCAAGTTGACGCTGCTTCAAAACTTGTTGCGTATGGA
TCAAAACAAGCACACTCGTCGTTGGAAAAGGGAGCTCGGATTGCAGGTAC
ACAACTTCGACTTTTAGATATTGATGGCAAACACAGCATGCGTGGGGAGG
TTTTGGAAAGTGCAATCAAAGAAGATAAGGCTAAAGGTTTGATGCCATAT
TTTGTATGCGCGACTTTGGGTACCACAAGTTTATGTTCATTTGATGCGAT
TGATGAAATCAGTGCAGTGGCAAAACAAGAAGGATTGTGGGTGAATGTAG
ATGCGGCTTACGCTGGCGCCGCTCTGATTTGTCCGGAGTATAGATACCTC
ATCACAAATTGGAATGGTATTGATTCTTTCGCTTTGAGTTGCAATAAATG
GCTCATGGTCACGGCTGATTGCGCCGTCATGTTTGTTCGAGATTCACTGG
ATTTACTAAAgaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026035XLOC_026035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042165-exon-sc0003250-1491911889:3922..4485TCONS_00042165-exon-sc0003250-1491911889:3922..4485Clytia hemisphaericaexon
TCONS_00042165-exon-sc0003250-1510915933:3922..4485TCONS_00042165-exon-sc0003250-1510915933:3922..4485Clytia hemisphaericaexon
TCONS_00042165-exon-sc0003250-1575043694:3922..4485TCONS_00042165-exon-sc0003250-1575043694:3922..4485Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042165-proteinTCONS_00042165-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003250supercontigsc0003250:3922..4485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.208438	0	0	0	0.134771	0.212996	0.128485	0.168295	0.526915	0.309185	0	0.133115	10.4256	6.62675	2.21344	1.53588	1.16912	1.23245	0	0.111168	0.285275	0.247827	0	0	0.214597	0	0.137034	0	0.175254	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002129PyrdxlP-dep_de-COase
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0016831carboxy-lyase activity
GO:0030170pyridoxal phosphate binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0019752carboxylic acid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019752 carboxylic acid metabolic process
molecular_function GO:0016831 carboxy-lyase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
[Close]
BLAST of TCONS_00042165 vs. Swiss-Prot (Human)
Match: DCHS (Histidine decarboxylase OS=Homo sapiens GN=HDC PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.551e-48
Identity = 79/179 (44.13%), Postives = 119/179 (66.48%), Query Frame = -1 
Query:    1 SMSETILIAMLAAKHRMLEKHNLNQVDA-----ASKLVAYGSKQAHSSLEKGARIAGTQLRLLDIDGKHSMRGEVLESAIKEDKAKGLMPYFVCATLGTTSLCSFDAIDEISAVAKQEGLWVNVDAAYAGAALICPEYRYLITNWNGIDSFALSCNKWLMVTADCAVMFVRDSLDLLKT 522
            ++SE+ LIA+LAA+   + +   ++ DA      ++LVAY S QAHSS+EK   I+  +++ L +D   S+RGE L+ AI+EDK +GL+P FVCATLGTT +C+FD + E+  +  +EGLW+++DAAYAG A +CPE+R  +      DSF  + +KW+MV  DC   +V+D   L +T
Sbjct:  149 TVSESTLIALLAARKNKILEMKTSEPDADESCLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQT 327
The following BLAST results are available for this feature:
BLAST of TCONS_00042165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCHS1.551e-4844.13Histidine decarboxylase OS=Homo sapiens GN=HDC PE=... [more]
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